Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03075

Experiment: R2A with Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03065 and CA265_RS03070 are separated by 64 nucleotidesCA265_RS03070 and CA265_RS03075 are separated by 9 nucleotidesCA265_RS03075 and CA265_RS03080 are separated by 172 nucleotides CA265_RS03065: CA265_RS03065 - hypothetical protein, at 760,543 to 761,079 _RS03065 CA265_RS03070: CA265_RS03070 - sec-independent protein translocase TatC, at 761,144 to 761,539 _RS03070 CA265_RS03075: CA265_RS03075 - hypothetical protein, at 761,549 to 761,974 _RS03075 CA265_RS03080: CA265_RS03080 - malate dehydrogenase, at 762,147 to 763,085 _RS03080 Position (kb) 761 762Strain fitness (log2 ratio) -2 -1 0 1 2 3at 760.641 kb on + strand, within CA265_RS03065at 760.765 kb on + strand, within CA265_RS03065at 760.777 kb on - strand, within CA265_RS03065at 760.783 kb on + strand, within CA265_RS03065at 760.839 kb on + strand, within CA265_RS03065at 760.840 kb on - strand, within CA265_RS03065at 760.878 kb on + strand, within CA265_RS03065at 760.993 kb on - strand, within CA265_RS03065at 761.001 kb on + strand, within CA265_RS03065at 761.020 kb on + strand, within CA265_RS03065at 761.021 kb on - strand, within CA265_RS03065at 761.099 kb on + strandat 761.236 kb on + strand, within CA265_RS03070at 761.236 kb on + strand, within CA265_RS03070at 761.324 kb on + strand, within CA265_RS03070at 761.357 kb on - strand, within CA265_RS03070at 761.359 kb on - strand, within CA265_RS03070at 761.427 kb on - strand, within CA265_RS03070at 761.447 kb on + strand, within CA265_RS03070at 761.458 kb on + strand, within CA265_RS03070at 761.468 kb on - strand, within CA265_RS03070at 761.492 kb on - strand, within CA265_RS03070at 761.492 kb on - strand, within CA265_RS03070at 761.509 kb on + strandat 761.510 kb on - strandat 761.547 kb on + strandat 761.547 kb on + strandat 761.548 kb on - strandat 761.608 kb on + strand, within CA265_RS03075at 761.609 kb on + strand, within CA265_RS03075at 761.610 kb on - strand, within CA265_RS03075at 761.610 kb on - strand, within CA265_RS03075at 761.610 kb on - strand, within CA265_RS03075at 761.626 kb on + strand, within CA265_RS03075at 761.626 kb on + strand, within CA265_RS03075at 761.631 kb on - strand, within CA265_RS03075at 761.632 kb on + strand, within CA265_RS03075at 761.632 kb on + strand, within CA265_RS03075at 761.632 kb on + strand, within CA265_RS03075at 761.633 kb on - strand, within CA265_RS03075at 761.785 kb on + strand, within CA265_RS03075at 761.805 kb on - strand, within CA265_RS03075at 761.839 kb on + strand, within CA265_RS03075at 761.851 kb on + strand, within CA265_RS03075at 761.866 kb on + strand, within CA265_RS03075at 761.866 kb on + strand, within CA265_RS03075at 761.979 kb on + strandat 761.979 kb on + strandat 762.023 kb on - strandat 762.048 kb on + strandat 762.057 kb on - strandat 762.067 kb on + strandat 762.067 kb on + strandat 762.068 kb on - strandat 762.068 kb on - strandat 762.068 kb on - strandat 762.093 kb on - strandat 762.137 kb on + strandat 762.137 kb on + strandat 762.182 kb on + strandat 762.275 kb on + strand, within CA265_RS03080at 762.286 kb on - strand, within CA265_RS03080at 762.291 kb on + strand, within CA265_RS03080at 762.300 kb on - strand, within CA265_RS03080at 762.426 kb on + strand, within CA265_RS03080at 762.458 kb on + strand, within CA265_RS03080at 762.483 kb on - strand, within CA265_RS03080at 762.501 kb on - strand, within CA265_RS03080at 762.520 kb on + strand, within CA265_RS03080at 762.555 kb on - strand, within CA265_RS03080at 762.607 kb on - strand, within CA265_RS03080at 762.623 kb on - strand, within CA265_RS03080at 762.706 kb on + strand, within CA265_RS03080at 762.707 kb on - strand, within CA265_RS03080at 762.803 kb on + strand, within CA265_RS03080at 762.806 kb on + strand, within CA265_RS03080at 762.858 kb on - strand, within CA265_RS03080at 762.892 kb on + strand, within CA265_RS03080

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml
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760,641 + CA265_RS03065 0.18 -1.4
760,765 + CA265_RS03065 0.41 +0.5
760,777 - CA265_RS03065 0.44 +0.8
760,783 + CA265_RS03065 0.45 -0.3
760,839 + CA265_RS03065 0.55 +0.5
760,840 - CA265_RS03065 0.55 +1.0
760,878 + CA265_RS03065 0.62 +0.6
760,993 - CA265_RS03065 0.84 +3.1
761,001 + CA265_RS03065 0.85 -1.1
761,020 + CA265_RS03065 0.89 -0.5
761,021 - CA265_RS03065 0.89 -1.4
761,099 + +1.0
761,236 + CA265_RS03070 0.23 -0.5
761,236 + CA265_RS03070 0.23 +2.6
761,324 + CA265_RS03070 0.45 -0.1
761,357 - CA265_RS03070 0.54 -0.3
761,359 - CA265_RS03070 0.54 -0.2
761,427 - CA265_RS03070 0.71 -0.4
761,447 + CA265_RS03070 0.77 +0.5
761,458 + CA265_RS03070 0.79 -1.0
761,468 - CA265_RS03070 0.82 +2.1
761,492 - CA265_RS03070 0.88 +2.9
761,492 - CA265_RS03070 0.88 -0.8
761,509 + -1.6
761,510 - +0.5
761,547 + +0.2
761,547 + +0.5
761,548 - +0.5
761,608 + CA265_RS03075 0.14 +0.0
761,609 + CA265_RS03075 0.14 -2.1
761,610 - CA265_RS03075 0.14 +0.9
761,610 - CA265_RS03075 0.14 +1.8
761,610 - CA265_RS03075 0.14 +0.8
761,626 + CA265_RS03075 0.18 +1.0
761,626 + CA265_RS03075 0.18 +1.0
761,631 - CA265_RS03075 0.19 -1.0
761,632 + CA265_RS03075 0.19 -0.2
761,632 + CA265_RS03075 0.19 -0.6
761,632 + CA265_RS03075 0.19 +0.8
761,633 - CA265_RS03075 0.20 +0.6
761,785 + CA265_RS03075 0.55 -0.2
761,805 - CA265_RS03075 0.60 -0.1
761,839 + CA265_RS03075 0.68 -1.2
761,851 + CA265_RS03075 0.71 -0.9
761,866 + CA265_RS03075 0.74 -1.2
761,866 + CA265_RS03075 0.74 -0.4
761,979 + +0.3
761,979 + +0.2
762,023 - +1.6
762,048 + -0.2
762,057 - +0.3
762,067 + +0.2
762,067 + +0.8
762,068 - +1.2
762,068 - +1.0
762,068 - -0.6
762,093 - +0.0
762,137 + -0.4
762,137 + +0.9
762,182 + -2.1
762,275 + CA265_RS03080 0.14 -1.1
762,286 - CA265_RS03080 0.15 -0.4
762,291 + CA265_RS03080 0.15 -2.0
762,300 - CA265_RS03080 0.16 -1.6
762,426 + CA265_RS03080 0.30 -2.0
762,458 + CA265_RS03080 0.33 -1.8
762,483 - CA265_RS03080 0.36 +0.1
762,501 - CA265_RS03080 0.38 +0.1
762,520 + CA265_RS03080 0.40 -0.1
762,555 - CA265_RS03080 0.43 -2.4
762,607 - CA265_RS03080 0.49 -0.2
762,623 - CA265_RS03080 0.51 -1.8
762,706 + CA265_RS03080 0.60 -2.5
762,707 - CA265_RS03080 0.60 -0.8
762,803 + CA265_RS03080 0.70 -1.8
762,806 + CA265_RS03080 0.70 +1.0
762,858 - CA265_RS03080 0.76 -0.8
762,892 + CA265_RS03080 0.79 -1.1

Or see this region's nucleotide sequence