Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01290

Experiment: R2A with Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01285 and CA265_RS01290 are separated by 100 nucleotidesCA265_RS01290 and CA265_RS01295 are separated by 88 nucleotides CA265_RS01285: CA265_RS01285 - phytanoyl-CoA dioxygenase family protein, at 318,123 to 319,103 _RS01285 CA265_RS01290: CA265_RS01290 - glycoside hydrolase, at 319,204 to 322,512 _RS01290 CA265_RS01295: CA265_RS01295 - hypothetical protein, at 322,601 to 324,760 _RS01295 Position (kb) 319 320 321 322 323Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 318.226 kb on - strand, within CA265_RS01285at 318.226 kb on - strand, within CA265_RS01285at 318.226 kb on - strand, within CA265_RS01285at 318.307 kb on + strand, within CA265_RS01285at 318.318 kb on - strand, within CA265_RS01285at 318.332 kb on + strand, within CA265_RS01285at 318.373 kb on - strand, within CA265_RS01285at 318.495 kb on + strand, within CA265_RS01285at 318.569 kb on - strand, within CA265_RS01285at 318.675 kb on + strand, within CA265_RS01285at 318.676 kb on - strand, within CA265_RS01285at 318.757 kb on + strand, within CA265_RS01285at 318.899 kb on + strand, within CA265_RS01285at 318.915 kb on - strand, within CA265_RS01285at 318.915 kb on - strand, within CA265_RS01285at 319.071 kb on + strandat 319.073 kb on + strandat 319.082 kb on - strandat 319.082 kb on - strandat 319.084 kb on - strandat 319.151 kb on + strandat 319.152 kb on - strandat 319.164 kb on + strandat 319.165 kb on - strandat 319.307 kb on + strandat 319.327 kb on + strandat 319.441 kb on + strandat 319.441 kb on + strandat 319.474 kb on - strandat 319.510 kb on + strandat 319.510 kb on + strandat 319.511 kb on - strandat 319.511 kb on - strandat 319.511 kb on - strandat 319.557 kb on + strand, within CA265_RS01290at 319.658 kb on + strand, within CA265_RS01290at 319.659 kb on - strand, within CA265_RS01290at 319.674 kb on + strand, within CA265_RS01290at 319.741 kb on + strand, within CA265_RS01290at 319.779 kb on + strand, within CA265_RS01290at 319.783 kb on - strand, within CA265_RS01290at 319.826 kb on + strand, within CA265_RS01290at 319.827 kb on - strand, within CA265_RS01290at 319.827 kb on - strand, within CA265_RS01290at 319.878 kb on + strand, within CA265_RS01290at 319.881 kb on + strand, within CA265_RS01290at 319.892 kb on - strand, within CA265_RS01290at 319.916 kb on + strand, within CA265_RS01290at 319.917 kb on - strand, within CA265_RS01290at 320.002 kb on - strand, within CA265_RS01290at 320.005 kb on - strand, within CA265_RS01290at 320.005 kb on - strand, within CA265_RS01290at 320.032 kb on + strand, within CA265_RS01290at 320.043 kb on - strand, within CA265_RS01290at 320.052 kb on - strand, within CA265_RS01290at 320.052 kb on - strand, within CA265_RS01290at 320.192 kb on + strand, within CA265_RS01290at 320.192 kb on + strand, within CA265_RS01290at 320.192 kb on + strand, within CA265_RS01290at 320.193 kb on - strand, within CA265_RS01290at 320.281 kb on - strand, within CA265_RS01290at 320.299 kb on + strand, within CA265_RS01290at 320.308 kb on - strand, within CA265_RS01290at 320.394 kb on + strand, within CA265_RS01290at 320.436 kb on + strand, within CA265_RS01290at 320.533 kb on + strand, within CA265_RS01290at 320.623 kb on + strand, within CA265_RS01290at 320.648 kb on + strand, within CA265_RS01290at 320.648 kb on + strand, within CA265_RS01290at 320.649 kb on - strand, within CA265_RS01290at 320.649 kb on - strand, within CA265_RS01290at 320.693 kb on + strand, within CA265_RS01290at 320.732 kb on + strand, within CA265_RS01290at 320.795 kb on + strand, within CA265_RS01290at 320.842 kb on - strand, within CA265_RS01290at 320.842 kb on - strand, within CA265_RS01290at 320.901 kb on + strand, within CA265_RS01290at 320.911 kb on - strand, within CA265_RS01290at 320.976 kb on + strand, within CA265_RS01290at 320.997 kb on - strand, within CA265_RS01290at 321.008 kb on - strand, within CA265_RS01290at 321.031 kb on + strand, within CA265_RS01290at 321.032 kb on - strand, within CA265_RS01290at 321.032 kb on - strand, within CA265_RS01290at 321.069 kb on + strand, within CA265_RS01290at 321.069 kb on + strand, within CA265_RS01290at 321.087 kb on + strand, within CA265_RS01290at 321.088 kb on - strand, within CA265_RS01290at 321.165 kb on + strand, within CA265_RS01290at 321.165 kb on + strand, within CA265_RS01290at 321.259 kb on - strand, within CA265_RS01290at 321.290 kb on + strand, within CA265_RS01290at 321.305 kb on + strand, within CA265_RS01290at 321.306 kb on - strand, within CA265_RS01290at 321.339 kb on + strand, within CA265_RS01290at 321.350 kb on + strand, within CA265_RS01290at 321.360 kb on - strand, within CA265_RS01290at 321.364 kb on - strand, within CA265_RS01290at 321.373 kb on + strand, within CA265_RS01290at 321.401 kb on + strand, within CA265_RS01290at 321.402 kb on - strand, within CA265_RS01290at 321.442 kb on - strand, within CA265_RS01290at 321.459 kb on + strand, within CA265_RS01290at 321.460 kb on - strand, within CA265_RS01290at 321.501 kb on + strand, within CA265_RS01290at 321.502 kb on - strand, within CA265_RS01290at 321.526 kb on - strand, within CA265_RS01290at 321.559 kb on + strand, within CA265_RS01290at 321.559 kb on + strand, within CA265_RS01290at 321.560 kb on - strand, within CA265_RS01290at 321.595 kb on + strand, within CA265_RS01290at 321.595 kb on + strand, within CA265_RS01290at 321.596 kb on - strand, within CA265_RS01290at 321.602 kb on - strand, within CA265_RS01290at 321.654 kb on - strand, within CA265_RS01290at 321.777 kb on + strand, within CA265_RS01290at 321.782 kb on + strand, within CA265_RS01290at 321.951 kb on - strand, within CA265_RS01290at 322.015 kb on - strand, within CA265_RS01290at 322.096 kb on + strand, within CA265_RS01290at 322.119 kb on + strand, within CA265_RS01290at 322.162 kb on + strand, within CA265_RS01290at 322.290 kb on - strandat 322.342 kb on + strandat 322.343 kb on - strandat 322.346 kb on + strandat 322.346 kb on + strandat 322.459 kb on - strandat 322.502 kb on + strandat 322.503 kb on - strandat 322.511 kb on - strandat 322.516 kb on + strandat 322.582 kb on + strandat 322.582 kb on + strandat 322.583 kb on - strandat 322.587 kb on - strandat 322.613 kb on - strandat 322.613 kb on - strandat 322.642 kb on + strandat 322.643 kb on - strandat 322.643 kb on - strandat 322.643 kb on - strandat 322.685 kb on - strandat 322.685 kb on - strandat 322.726 kb on + strandat 322.799 kb on + strandat 322.800 kb on - strandat 322.885 kb on + strand, within CA265_RS01295at 322.942 kb on + strand, within CA265_RS01295at 323.020 kb on + strand, within CA265_RS01295at 323.062 kb on + strand, within CA265_RS01295at 323.068 kb on - strand, within CA265_RS01295at 323.119 kb on + strand, within CA265_RS01295at 323.119 kb on + strand, within CA265_RS01295at 323.123 kb on + strand, within CA265_RS01295at 323.123 kb on + strand, within CA265_RS01295at 323.154 kb on + strand, within CA265_RS01295at 323.154 kb on + strand, within CA265_RS01295at 323.291 kb on + strand, within CA265_RS01295at 323.292 kb on - strand, within CA265_RS01295at 323.292 kb on - strand, within CA265_RS01295at 323.329 kb on + strand, within CA265_RS01295at 323.409 kb on + strand, within CA265_RS01295at 323.424 kb on - strand, within CA265_RS01295at 323.427 kb on - strand, within CA265_RS01295at 323.439 kb on - strand, within CA265_RS01295at 323.484 kb on + strand, within CA265_RS01295at 323.485 kb on - strand, within CA265_RS01295

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml
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318,226 - CA265_RS01285 0.10 -0.7
318,226 - CA265_RS01285 0.10 +0.0
318,226 - CA265_RS01285 0.10 -3.1
318,307 + CA265_RS01285 0.19 +0.9
318,318 - CA265_RS01285 0.20 +0.2
318,332 + CA265_RS01285 0.21 -2.0
318,373 - CA265_RS01285 0.25 -1.1
318,495 + CA265_RS01285 0.38 +0.6
318,569 - CA265_RS01285 0.45 -1.6
318,675 + CA265_RS01285 0.56 +0.4
318,676 - CA265_RS01285 0.56 +0.4
318,757 + CA265_RS01285 0.65 +0.1
318,899 + CA265_RS01285 0.79 -0.4
318,915 - CA265_RS01285 0.81 +0.4
318,915 - CA265_RS01285 0.81 +0.7
319,071 + -0.1
319,073 + -0.4
319,082 - -0.2
319,082 - +0.1
319,084 - +0.2
319,151 + -0.5
319,152 - -0.6
319,164 + +0.7
319,165 - -0.1
319,307 + +0.0
319,327 + -0.3
319,441 + -0.2
319,441 + +0.5
319,474 - +0.9
319,510 + +0.4
319,510 + +0.7
319,511 - +1.0
319,511 - +0.3
319,511 - -0.4
319,557 + CA265_RS01290 0.11 +0.8
319,658 + CA265_RS01290 0.14 +0.3
319,659 - CA265_RS01290 0.14 +0.1
319,674 + CA265_RS01290 0.14 -0.6
319,741 + CA265_RS01290 0.16 -0.0
319,779 + CA265_RS01290 0.17 +0.2
319,783 - CA265_RS01290 0.17 +1.3
319,826 + CA265_RS01290 0.19 +1.0
319,827 - CA265_RS01290 0.19 +0.4
319,827 - CA265_RS01290 0.19 -0.1
319,878 + CA265_RS01290 0.20 +0.7
319,881 + CA265_RS01290 0.20 +0.3
319,892 - CA265_RS01290 0.21 +0.8
319,916 + CA265_RS01290 0.22 -1.9
319,917 - CA265_RS01290 0.22 -0.4
320,002 - CA265_RS01290 0.24 -0.4
320,005 - CA265_RS01290 0.24 +0.2
320,005 - CA265_RS01290 0.24 +0.4
320,032 + CA265_RS01290 0.25 -0.4
320,043 - CA265_RS01290 0.25 -0.8
320,052 - CA265_RS01290 0.26 -0.3
320,052 - CA265_RS01290 0.26 +0.4
320,192 + CA265_RS01290 0.30 -0.2
320,192 + CA265_RS01290 0.30 -0.7
320,192 + CA265_RS01290 0.30 +0.1
320,193 - CA265_RS01290 0.30 +0.1
320,281 - CA265_RS01290 0.33 -0.9
320,299 + CA265_RS01290 0.33 -1.4
320,308 - CA265_RS01290 0.33 -1.1
320,394 + CA265_RS01290 0.36 +0.3
320,436 + CA265_RS01290 0.37 +0.1
320,533 + CA265_RS01290 0.40 -0.3
320,623 + CA265_RS01290 0.43 +0.9
320,648 + CA265_RS01290 0.44 +0.3
320,648 + CA265_RS01290 0.44 +0.6
320,649 - CA265_RS01290 0.44 +0.8
320,649 - CA265_RS01290 0.44 -0.3
320,693 + CA265_RS01290 0.45 +0.5
320,732 + CA265_RS01290 0.46 +1.2
320,795 + CA265_RS01290 0.48 +1.0
320,842 - CA265_RS01290 0.50 -0.1
320,842 - CA265_RS01290 0.50 +1.1
320,901 + CA265_RS01290 0.51 +0.6
320,911 - CA265_RS01290 0.52 +0.8
320,976 + CA265_RS01290 0.54 +0.9
320,997 - CA265_RS01290 0.54 -0.3
321,008 - CA265_RS01290 0.55 -0.3
321,031 + CA265_RS01290 0.55 -0.5
321,032 - CA265_RS01290 0.55 +0.2
321,032 - CA265_RS01290 0.55 -0.6
321,069 + CA265_RS01290 0.56 +1.2
321,069 + CA265_RS01290 0.56 +0.2
321,087 + CA265_RS01290 0.57 +1.2
321,088 - CA265_RS01290 0.57 +0.3
321,165 + CA265_RS01290 0.59 +2.7
321,165 + CA265_RS01290 0.59 +0.6
321,259 - CA265_RS01290 0.62 +0.6
321,290 + CA265_RS01290 0.63 -0.5
321,305 + CA265_RS01290 0.63 -0.4
321,306 - CA265_RS01290 0.64 +0.1
321,339 + CA265_RS01290 0.65 -0.2
321,350 + CA265_RS01290 0.65 +0.2
321,360 - CA265_RS01290 0.65 -0.7
321,364 - CA265_RS01290 0.65 -1.2
321,373 + CA265_RS01290 0.66 -0.3
321,401 + CA265_RS01290 0.66 -0.3
321,402 - CA265_RS01290 0.66 -3.4
321,442 - CA265_RS01290 0.68 -0.8
321,459 + CA265_RS01290 0.68 +0.5
321,460 - CA265_RS01290 0.68 -0.3
321,501 + CA265_RS01290 0.69 -0.4
321,502 - CA265_RS01290 0.69 -0.2
321,526 - CA265_RS01290 0.70 -0.8
321,559 + CA265_RS01290 0.71 +0.9
321,559 + CA265_RS01290 0.71 +0.1
321,560 - CA265_RS01290 0.71 -1.4
321,595 + CA265_RS01290 0.72 +0.7
321,595 + CA265_RS01290 0.72 +0.5
321,596 - CA265_RS01290 0.72 +0.1
321,602 - CA265_RS01290 0.72 +2.1
321,654 - CA265_RS01290 0.74 +0.2
321,777 + CA265_RS01290 0.78 +1.9
321,782 + CA265_RS01290 0.78 +0.2
321,951 - CA265_RS01290 0.83 +0.2
322,015 - CA265_RS01290 0.85 -0.6
322,096 + CA265_RS01290 0.87 +1.4
322,119 + CA265_RS01290 0.88 +0.3
322,162 + CA265_RS01290 0.89 -0.2
322,290 - -0.7
322,342 + -0.4
322,343 - +0.3
322,346 + +0.4
322,346 + +0.7
322,459 - -1.1
322,502 + +0.5
322,503 - -2.0
322,511 - -0.5
322,516 + +1.2
322,582 + -3.3
322,582 + +0.8
322,583 - -0.8
322,587 - +0.0
322,613 - -0.3
322,613 - +1.4
322,642 + -0.3
322,643 - -0.3
322,643 - +0.1
322,643 - -0.3
322,685 - +0.3
322,685 - +0.2
322,726 + +0.7
322,799 + +0.3
322,800 - +0.1
322,885 + CA265_RS01295 0.13 -1.1
322,942 + CA265_RS01295 0.16 +1.0
323,020 + CA265_RS01295 0.19 +0.4
323,062 + CA265_RS01295 0.21 +0.2
323,068 - CA265_RS01295 0.22 -1.4
323,119 + CA265_RS01295 0.24 +0.5
323,119 + CA265_RS01295 0.24 +0.1
323,123 + CA265_RS01295 0.24 +0.3
323,123 + CA265_RS01295 0.24 -0.0
323,154 + CA265_RS01295 0.26 +0.5
323,154 + CA265_RS01295 0.26 -0.6
323,291 + CA265_RS01295 0.32 -0.8
323,292 - CA265_RS01295 0.32 +1.2
323,292 - CA265_RS01295 0.32 -0.6
323,329 + CA265_RS01295 0.34 -0.7
323,409 + CA265_RS01295 0.37 +0.0
323,424 - CA265_RS01295 0.38 -0.3
323,427 - CA265_RS01295 0.38 +0.4
323,439 - CA265_RS01295 0.39 +0.3
323,484 + CA265_RS01295 0.41 -0.4
323,485 - CA265_RS01295 0.41 +0.5

Or see this region's nucleotide sequence