Experiment: R2A with Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00930 and CA265_RS00935 are separated by 6 nucleotides CA265_RS00935 and CA265_RS00940 are separated by 563 nucleotides CA265_RS00940 and CA265_RS00945 overlap by 38 nucleotides
CA265_RS00930: CA265_RS00930 - CusA/CzcA family heavy metal efflux RND transporter, at 229,140 to 233,504
_RS00930
CA265_RS00935: CA265_RS00935 - hypothetical protein, at 233,511 to 234,644
_RS00935
CA265_RS00940: CA265_RS00940 - hypothetical protein, at 235,208 to 235,444
_RS00940
CA265_RS00945: CA265_RS00945 - SusC/RagA family TonB-linked outer membrane protein, at 235,407 to 238,538
_RS00945
Position (kb) 233
234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 232.546 kb on - strand, within CA265_RS00930 at 232.564 kb on + strand, within CA265_RS00930 at 232.568 kb on + strand, within CA265_RS00930 at 232.648 kb on - strand, within CA265_RS00930 at 232.660 kb on + strand, within CA265_RS00930 at 232.685 kb on - strand, within CA265_RS00930 at 232.704 kb on + strand, within CA265_RS00930 at 232.817 kb on - strand, within CA265_RS00930 at 232.831 kb on - strand, within CA265_RS00930 at 232.831 kb on - strand, within CA265_RS00930 at 232.831 kb on - strand, within CA265_RS00930 at 232.943 kb on + strand, within CA265_RS00930 at 232.944 kb on - strand, within CA265_RS00930 at 233.022 kb on - strand, within CA265_RS00930 at 233.032 kb on + strand, within CA265_RS00930 at 233.057 kb on + strand, within CA265_RS00930 at 233.078 kb on + strand at 233.098 kb on - strand at 233.105 kb on + strand at 233.134 kb on + strand at 233.134 kb on + strand at 233.242 kb on + strand at 233.340 kb on - strand at 233.433 kb on + strand at 233.436 kb on + strand at 233.502 kb on + strand at 233.502 kb on + strand at 233.507 kb on + strand at 233.507 kb on + strand at 233.508 kb on - strand at 233.615 kb on + strand at 233.660 kb on + strand, within CA265_RS00935 at 233.660 kb on + strand, within CA265_RS00935 at 233.660 kb on + strand, within CA265_RS00935 at 233.661 kb on - strand, within CA265_RS00935 at 233.705 kb on + strand, within CA265_RS00935 at 233.706 kb on - strand, within CA265_RS00935 at 233.752 kb on + strand, within CA265_RS00935 at 233.752 kb on + strand, within CA265_RS00935 at 233.758 kb on + strand, within CA265_RS00935 at 233.758 kb on + strand, within CA265_RS00935 at 233.772 kb on + strand, within CA265_RS00935 at 233.773 kb on - strand, within CA265_RS00935 at 233.773 kb on - strand, within CA265_RS00935 at 233.801 kb on + strand, within CA265_RS00935 at 233.850 kb on + strand, within CA265_RS00935 at 233.871 kb on + strand, within CA265_RS00935 at 233.901 kb on - strand, within CA265_RS00935 at 233.913 kb on + strand, within CA265_RS00935 at 233.913 kb on + strand, within CA265_RS00935 at 233.915 kb on + strand, within CA265_RS00935 at 233.915 kb on + strand, within CA265_RS00935 at 234.001 kb on + strand, within CA265_RS00935 at 234.037 kb on + strand, within CA265_RS00935 at 234.045 kb on - strand, within CA265_RS00935 at 234.140 kb on + strand, within CA265_RS00935 at 234.141 kb on - strand, within CA265_RS00935 at 234.144 kb on + strand, within CA265_RS00935 at 234.144 kb on + strand, within CA265_RS00935 at 234.145 kb on - strand, within CA265_RS00935 at 234.162 kb on - strand, within CA265_RS00935 at 234.206 kb on + strand, within CA265_RS00935 at 234.207 kb on - strand, within CA265_RS00935 at 234.261 kb on - strand, within CA265_RS00935 at 234.339 kb on - strand, within CA265_RS00935 at 234.397 kb on + strand, within CA265_RS00935 at 234.398 kb on - strand, within CA265_RS00935 at 234.431 kb on - strand, within CA265_RS00935 at 234.470 kb on + strand, within CA265_RS00935 at 234.559 kb on + strand at 234.559 kb on + strand at 234.560 kb on - strand at 234.560 kb on - strand at 234.642 kb on + strand at 234.660 kb on - strand at 234.660 kb on - strand at 234.660 kb on - strand at 234.815 kb on - strand at 234.888 kb on + strand at 235.045 kb on + strand at 235.124 kb on - strand at 235.134 kb on - strand at 235.135 kb on + strand at 235.135 kb on + strand at 235.135 kb on + strand at 235.237 kb on + strand, within CA265_RS00940 at 235.238 kb on - strand, within CA265_RS00940 at 235.258 kb on + strand, within CA265_RS00940 at 235.302 kb on - strand, within CA265_RS00940 at 235.303 kb on + strand, within CA265_RS00940 at 235.304 kb on - strand, within CA265_RS00940 at 235.391 kb on + strand, within CA265_RS00940 at 235.452 kb on - strand at 235.567 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml remove 232,546 - CA265_RS00930 0.78 +0.7 232,564 + CA265_RS00930 0.78 +0.2 232,568 + CA265_RS00930 0.79 +0.3 232,648 - CA265_RS00930 0.80 -1.4 232,660 + CA265_RS00930 0.81 -1.7 232,685 - CA265_RS00930 0.81 +0.3 232,704 + CA265_RS00930 0.82 +0.2 232,817 - CA265_RS00930 0.84 +0.7 232,831 - CA265_RS00930 0.85 -0.5 232,831 - CA265_RS00930 0.85 -0.1 232,831 - CA265_RS00930 0.85 -0.4 232,943 + CA265_RS00930 0.87 -2.8 232,944 - CA265_RS00930 0.87 -0.6 233,022 - CA265_RS00930 0.89 +0.2 233,032 + CA265_RS00930 0.89 -2.7 233,057 + CA265_RS00930 0.90 -1.4 233,078 + -1.6 233,098 - +0.5 233,105 + -2.2 233,134 + -2.0 233,134 + -2.9 233,242 + -1.1 233,340 - +0.0 233,433 + -0.1 233,436 + -0.8 233,502 + +0.4 233,502 + +0.2 233,507 + +0.7 233,507 + +1.0 233,508 - -0.8 233,615 + -0.9 233,660 + CA265_RS00935 0.13 +1.2 233,660 + CA265_RS00935 0.13 +1.5 233,660 + CA265_RS00935 0.13 -1.1 233,661 - CA265_RS00935 0.13 +0.2 233,705 + CA265_RS00935 0.17 +0.0 233,706 - CA265_RS00935 0.17 -0.2 233,752 + CA265_RS00935 0.21 +0.2 233,752 + CA265_RS00935 0.21 -0.7 233,758 + CA265_RS00935 0.22 +0.6 233,758 + CA265_RS00935 0.22 -0.5 233,772 + CA265_RS00935 0.23 -0.8 233,773 - CA265_RS00935 0.23 -1.3 233,773 - CA265_RS00935 0.23 -0.6 233,801 + CA265_RS00935 0.26 -0.1 233,850 + CA265_RS00935 0.30 -0.7 233,871 + CA265_RS00935 0.32 +1.0 233,901 - CA265_RS00935 0.34 +0.4 233,913 + CA265_RS00935 0.35 -0.1 233,913 + CA265_RS00935 0.35 +0.1 233,915 + CA265_RS00935 0.36 +0.1 233,915 + CA265_RS00935 0.36 +1.0 234,001 + CA265_RS00935 0.43 +0.4 234,037 + CA265_RS00935 0.46 -1.8 234,045 - CA265_RS00935 0.47 -0.4 234,140 + CA265_RS00935 0.55 +0.2 234,141 - CA265_RS00935 0.56 +0.7 234,144 + CA265_RS00935 0.56 +0.2 234,144 + CA265_RS00935 0.56 +0.5 234,145 - CA265_RS00935 0.56 -0.9 234,162 - CA265_RS00935 0.57 +0.4 234,206 + CA265_RS00935 0.61 +1.6 234,207 - CA265_RS00935 0.61 -0.6 234,261 - CA265_RS00935 0.66 -0.0 234,339 - CA265_RS00935 0.73 +0.3 234,397 + CA265_RS00935 0.78 +2.3 234,398 - CA265_RS00935 0.78 -1.5 234,431 - CA265_RS00935 0.81 -0.5 234,470 + CA265_RS00935 0.85 +0.0 234,559 + +2.0 234,559 + +0.3 234,560 - -0.1 234,560 - +0.7 234,642 + +0.6 234,660 - -1.2 234,660 - +0.3 234,660 - -1.0 234,815 - +1.0 234,888 + -0.4 235,045 + -0.2 235,124 - +0.4 235,134 - +0.5 235,135 + -1.0 235,135 + +0.1 235,135 + +0.0 235,237 + CA265_RS00940 0.12 +0.6 235,238 - CA265_RS00940 0.13 +0.3 235,258 + CA265_RS00940 0.21 -1.6 235,302 - CA265_RS00940 0.40 -0.2 235,303 + CA265_RS00940 0.40 +0.2 235,304 - CA265_RS00940 0.41 +0.8 235,391 + CA265_RS00940 0.77 +2.0 235,452 - +0.3 235,567 + +0.8
Or see this region's nucleotide sequence