Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_884 and Ac3H11_885 are separated by 22 nucleotides Ac3H11_885 and Ac3H11_886 are separated by 11 nucleotides Ac3H11_886 and Ac3H11_887 are separated by 125 nucleotides Ac3H11_887 and Ac3H11_888 are separated by 93 nucleotides Ac3H11_888 and Ac3H11_889 are separated by 26 nucleotides
Ac3H11_884 - Export protein, at 168,004 to 168,984
_884
Ac3H11_885 - hypothetical protein, at 169,007 to 169,168
_885
Ac3H11_886 - hypothetical protein, at 169,180 to 169,728
_886
Ac3H11_887 - putative exported protein, at 169,854 to 170,822
_887
Ac3H11_888 - hypothetical protein, at 170,916 to 171,173
_888
Ac3H11_889 - Salicylate hydroxylase (EC 1.14.13.1), at 171,200 to 172,846
_889
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1 at 169.444 kb on + strand, within Ac3H11_886 at 169.444 kb on + strand, within Ac3H11_886 at 169.444 kb on + strand, within Ac3H11_886 at 169.444 kb on + strand, within Ac3H11_886 at 169.445 kb on - strand, within Ac3H11_886 at 169.445 kb on - strand, within Ac3H11_886 at 169.445 kb on - strand, within Ac3H11_886 at 169.445 kb on - strand, within Ac3H11_886 at 169.447 kb on - strand, within Ac3H11_886 at 169.447 kb on - strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.489 kb on + strand, within Ac3H11_886 at 169.489 kb on + strand, within Ac3H11_886 at 169.658 kb on - strand, within Ac3H11_886 at 169.866 kb on + strand at 169.866 kb on + strand at 169.880 kb on + strand at 170.197 kb on + strand, within Ac3H11_887 at 170.198 kb on - strand, within Ac3H11_887 at 170.500 kb on + strand, within Ac3H11_887 at 170.500 kb on + strand, within Ac3H11_887 at 170.500 kb on + strand, within Ac3H11_887 at 170.501 kb on - strand, within Ac3H11_887 at 170.501 kb on - strand, within Ac3H11_887 at 170.572 kb on + strand, within Ac3H11_887 at 170.593 kb on + strand, within Ac3H11_887 at 170.716 kb on + strand, within Ac3H11_887 at 171.131 kb on - strand, within Ac3H11_888 at 171.131 kb on - strand, within Ac3H11_888 at 171.294 kb on + strand at 171.295 kb on - strand at 171.732 kb on + strand, within Ac3H11_889 at 171.733 kb on - strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 169,444 + Ac3H11_886 0.48 +1.6 169,444 + Ac3H11_886 0.48 -2.2 169,444 + Ac3H11_886 0.48 -1.4 169,444 + Ac3H11_886 0.48 +1.1 169,445 - Ac3H11_886 0.48 +0.6 169,445 - Ac3H11_886 0.48 +0.1 169,445 - Ac3H11_886 0.48 -1.1 169,445 - Ac3H11_886 0.48 -0.2 169,447 - Ac3H11_886 0.49 -0.9 169,447 - Ac3H11_886 0.49 +0.1 169,474 + Ac3H11_886 0.54 -0.6 169,474 + Ac3H11_886 0.54 +0.4 169,474 + Ac3H11_886 0.54 -0.4 169,474 + Ac3H11_886 0.54 +0.4 169,474 + Ac3H11_886 0.54 +0.6 169,474 + Ac3H11_886 0.54 +1.1 169,474 + Ac3H11_886 0.54 +1.3 169,475 - Ac3H11_886 0.54 +0.7 169,475 - Ac3H11_886 0.54 -0.7 169,475 - Ac3H11_886 0.54 -0.8 169,475 - Ac3H11_886 0.54 +0.1 169,475 - Ac3H11_886 0.54 -1.1 169,475 - Ac3H11_886 0.54 +0.9 169,475 - Ac3H11_886 0.54 -0.9 169,475 - Ac3H11_886 0.54 -0.3 169,489 + Ac3H11_886 0.56 -1.2 169,489 + Ac3H11_886 0.56 -1.1 169,658 - Ac3H11_886 0.87 +1.2 169,866 + -1.7 169,866 + -1.0 169,880 + +0.4 170,197 + Ac3H11_887 0.35 -1.0 170,198 - Ac3H11_887 0.36 -1.9 170,500 + Ac3H11_887 0.67 -1.8 170,500 + Ac3H11_887 0.67 -1.3 170,500 + Ac3H11_887 0.67 +0.6 170,501 - Ac3H11_887 0.67 +1.1 170,501 - Ac3H11_887 0.67 -0.3 170,572 + Ac3H11_887 0.74 -0.1 170,593 + Ac3H11_887 0.76 +0.4 170,716 + Ac3H11_887 0.89 -0.0 171,131 - Ac3H11_888 0.83 -0.6 171,131 - Ac3H11_888 0.83 -2.0 171,294 + -0.2 171,295 - +0.6 171,732 + Ac3H11_889 0.32 -2.7 171,733 - Ac3H11_889 0.32 -0.3 171,750 + Ac3H11_889 0.33 -1.2 171,750 + Ac3H11_889 0.33 -1.7 171,750 + Ac3H11_889 0.33 +0.2 171,750 + Ac3H11_889 0.33 +0.3 171,751 - Ac3H11_889 0.33 +0.9 171,751 - Ac3H11_889 0.33 -1.4 171,751 - Ac3H11_889 0.33 +0.5 171,751 - Ac3H11_889 0.33 +0.5 171,751 - Ac3H11_889 0.33 +0.3 171,751 - Ac3H11_889 0.33 -1.4 171,751 - Ac3H11_889 0.33 +0.1
Or see this region's nucleotide sequence