Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4986

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4985 and Ac3H11_4986 are separated by 17 nucleotidesAc3H11_4986 and Ac3H11_4987 are separated by 13 nucleotidesAc3H11_4987 and Ac3H11_4988 overlap by 4 nucleotides Ac3H11_4985 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 148,867 to 149,904 _4985 Ac3H11_4986 - High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1), at 149,922 to 151,103 _4986 Ac3H11_4987 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 151,117 to 151,935 _4987 Ac3H11_4988 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 151,932 to 153,734 _4988 Position (kb) 149 150 151 152Strain fitness (log2 ratio) -2 -1 0 1 2at 149.003 kb on - strand, within Ac3H11_4985at 149.116 kb on + strand, within Ac3H11_4985at 149.117 kb on - strand, within Ac3H11_4985at 149.117 kb on - strand, within Ac3H11_4985at 149.117 kb on - strand, within Ac3H11_4985at 149.242 kb on + strand, within Ac3H11_4985at 149.243 kb on - strand, within Ac3H11_4985at 149.243 kb on - strand, within Ac3H11_4985at 149.243 kb on - strand, within Ac3H11_4985at 149.383 kb on + strand, within Ac3H11_4985at 149.506 kb on - strand, within Ac3H11_4985at 149.507 kb on + strand, within Ac3H11_4985at 149.507 kb on + strand, within Ac3H11_4985at 149.507 kb on + strand, within Ac3H11_4985at 149.508 kb on - strand, within Ac3H11_4985at 149.521 kb on + strand, within Ac3H11_4985at 149.521 kb on + strand, within Ac3H11_4985at 149.555 kb on - strand, within Ac3H11_4985at 149.555 kb on - strand, within Ac3H11_4985at 149.555 kb on - strand, within Ac3H11_4985at 149.584 kb on + strand, within Ac3H11_4985at 149.585 kb on - strand, within Ac3H11_4985at 149.798 kb on + strand, within Ac3H11_4985at 149.798 kb on + strand, within Ac3H11_4985at 149.799 kb on - strand, within Ac3H11_4985at 149.799 kb on - strand, within Ac3H11_4985at 149.799 kb on - strand, within Ac3H11_4985at 149.902 kb on + strandat 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.160 kb on - strand, within Ac3H11_4986at 150.160 kb on - strand, within Ac3H11_4986at 150.160 kb on - strand, within Ac3H11_4986at 150.160 kb on - strand, within Ac3H11_4986at 150.181 kb on - strand, within Ac3H11_4986at 150.181 kb on - strand, within Ac3H11_4986at 150.181 kb on - strand, within Ac3H11_4986at 150.244 kb on - strand, within Ac3H11_4986at 150.247 kb on - strand, within Ac3H11_4986at 150.357 kb on + strand, within Ac3H11_4986at 150.358 kb on - strand, within Ac3H11_4986at 150.460 kb on - strand, within Ac3H11_4986at 150.612 kb on + strand, within Ac3H11_4986at 150.613 kb on - strand, within Ac3H11_4986at 150.630 kb on + strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.783 kb on + strand, within Ac3H11_4986at 150.784 kb on - strand, within Ac3H11_4986at 150.784 kb on - strand, within Ac3H11_4986at 150.786 kb on + strand, within Ac3H11_4986at 150.787 kb on - strand, within Ac3H11_4986at 150.787 kb on - strand, within Ac3H11_4986at 150.789 kb on + strand, within Ac3H11_4986at 150.789 kb on + strand, within Ac3H11_4986at 150.790 kb on - strand, within Ac3H11_4986at 150.790 kb on - strand, within Ac3H11_4986at 150.790 kb on - strand, within Ac3H11_4986at 150.790 kb on - strand, within Ac3H11_4986at 150.790 kb on - strand, within Ac3H11_4986at 150.858 kb on + strand, within Ac3H11_4986at 150.858 kb on + strand, within Ac3H11_4986at 150.859 kb on - strand, within Ac3H11_4986at 151.171 kb on + strandat 151.171 kb on + strandat 151.171 kb on + strandat 151.171 kb on + strandat 151.171 kb on + strandat 151.172 kb on - strandat 151.172 kb on - strandat 151.172 kb on - strandat 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.485 kb on + strand, within Ac3H11_4987at 151.485 kb on + strand, within Ac3H11_4987at 151.485 kb on + strand, within Ac3H11_4987at 151.486 kb on - strand, within Ac3H11_4987at 151.486 kb on - strand, within Ac3H11_4987at 151.510 kb on + strand, within Ac3H11_4987at 151.510 kb on + strand, within Ac3H11_4987at 151.510 kb on + strand, within Ac3H11_4987at 151.511 kb on - strand, within Ac3H11_4987at 151.511 kb on - strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.517 kb on - strand, within Ac3H11_4987at 151.559 kb on - strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.774 kb on + strand, within Ac3H11_4987at 151.775 kb on - strand, within Ac3H11_4987at 151.852 kb on + strand, within Ac3H11_4987at 151.906 kb on + strandat 151.906 kb on + strandat 151.907 kb on - strandat 151.907 kb on - strandat 151.907 kb on - strandat 151.907 kb on - strandat 151.907 kb on - strandat 152.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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149,003 - Ac3H11_4985 0.13 +0.9
149,116 + Ac3H11_4985 0.24 +0.4
149,117 - Ac3H11_4985 0.24 +1.0
149,117 - Ac3H11_4985 0.24 +0.4
149,117 - Ac3H11_4985 0.24 -0.3
149,242 + Ac3H11_4985 0.36 -1.2
149,243 - Ac3H11_4985 0.36 +1.1
149,243 - Ac3H11_4985 0.36 -0.5
149,243 - Ac3H11_4985 0.36 -0.3
149,383 + Ac3H11_4985 0.50 -0.9
149,506 - Ac3H11_4985 0.62 -0.2
149,507 + Ac3H11_4985 0.62 +0.9
149,507 + Ac3H11_4985 0.62 +1.1
149,507 + Ac3H11_4985 0.62 -0.4
149,508 - Ac3H11_4985 0.62 +0.5
149,521 + Ac3H11_4985 0.63 +0.1
149,521 + Ac3H11_4985 0.63 +0.5
149,555 - Ac3H11_4985 0.66 -0.8
149,555 - Ac3H11_4985 0.66 +1.1
149,555 - Ac3H11_4985 0.66 -0.1
149,584 + Ac3H11_4985 0.69 +0.2
149,585 - Ac3H11_4985 0.69 -0.3
149,798 + Ac3H11_4985 0.90 +0.9
149,798 + Ac3H11_4985 0.90 -2.4
149,799 - Ac3H11_4985 0.90 -0.7
149,799 - Ac3H11_4985 0.90 -0.0
149,799 - Ac3H11_4985 0.90 +0.4
149,902 + +0.7
150,159 + Ac3H11_4986 0.20 -0.4
150,159 + Ac3H11_4986 0.20 -1.0
150,159 + Ac3H11_4986 0.20 +1.3
150,159 + Ac3H11_4986 0.20 -0.2
150,159 + Ac3H11_4986 0.20 -0.9
150,159 + Ac3H11_4986 0.20 +0.4
150,159 + Ac3H11_4986 0.20 -0.4
150,160 - Ac3H11_4986 0.20 +0.2
150,160 - Ac3H11_4986 0.20 -0.1
150,160 - Ac3H11_4986 0.20 -0.2
150,160 - Ac3H11_4986 0.20 +1.4
150,181 - Ac3H11_4986 0.22 -0.0
150,181 - Ac3H11_4986 0.22 -0.2
150,181 - Ac3H11_4986 0.22 -1.8
150,244 - Ac3H11_4986 0.27 -0.6
150,247 - Ac3H11_4986 0.27 -0.9
150,357 + Ac3H11_4986 0.37 -0.7
150,358 - Ac3H11_4986 0.37 +0.2
150,460 - Ac3H11_4986 0.46 +0.3
150,612 + Ac3H11_4986 0.58 +0.6
150,613 - Ac3H11_4986 0.58 +0.4
150,630 + Ac3H11_4986 0.60 +0.3
150,631 - Ac3H11_4986 0.60 -0.5
150,631 - Ac3H11_4986 0.60 +0.2
150,631 - Ac3H11_4986 0.60 -0.0
150,631 - Ac3H11_4986 0.60 +0.0
150,631 - Ac3H11_4986 0.60 -0.4
150,631 - Ac3H11_4986 0.60 -0.1
150,783 + Ac3H11_4986 0.73 -0.1
150,784 - Ac3H11_4986 0.73 +0.6
150,784 - Ac3H11_4986 0.73 -0.1
150,786 + Ac3H11_4986 0.73 -0.8
150,787 - Ac3H11_4986 0.73 +0.2
150,787 - Ac3H11_4986 0.73 -0.4
150,789 + Ac3H11_4986 0.73 +0.0
150,789 + Ac3H11_4986 0.73 -0.5
150,790 - Ac3H11_4986 0.73 -0.5
150,790 - Ac3H11_4986 0.73 +0.1
150,790 - Ac3H11_4986 0.73 -0.6
150,790 - Ac3H11_4986 0.73 -0.0
150,790 - Ac3H11_4986 0.73 +0.2
150,858 + Ac3H11_4986 0.79 +1.0
150,858 + Ac3H11_4986 0.79 +0.4
150,859 - Ac3H11_4986 0.79 +0.3
151,171 + +1.7
151,171 + +0.1
151,171 + -1.3
151,171 + -0.7
151,171 + +0.8
151,172 - +0.6
151,172 - +0.4
151,172 - +0.0
151,462 + Ac3H11_4987 0.42 +0.2
151,462 + Ac3H11_4987 0.42 +0.6
151,462 + Ac3H11_4987 0.42 -1.2
151,462 + Ac3H11_4987 0.42 -0.3
151,462 + Ac3H11_4987 0.42 +0.5
151,462 + Ac3H11_4987 0.42 +1.3
151,462 + Ac3H11_4987 0.42 +0.9
151,463 - Ac3H11_4987 0.42 +0.4
151,463 - Ac3H11_4987 0.42 +1.2
151,463 - Ac3H11_4987 0.42 +0.4
151,463 - Ac3H11_4987 0.42 -1.0
151,463 - Ac3H11_4987 0.42 -1.3
151,463 - Ac3H11_4987 0.42 +0.2
151,463 - Ac3H11_4987 0.42 +0.2
151,485 + Ac3H11_4987 0.45 -0.2
151,485 + Ac3H11_4987 0.45 +0.0
151,485 + Ac3H11_4987 0.45 -0.6
151,486 - Ac3H11_4987 0.45 +1.9
151,486 - Ac3H11_4987 0.45 -0.8
151,510 + Ac3H11_4987 0.48 +2.0
151,510 + Ac3H11_4987 0.48 -1.4
151,510 + Ac3H11_4987 0.48 -1.5
151,511 - Ac3H11_4987 0.48 -2.0
151,511 - Ac3H11_4987 0.48 -0.1
151,516 + Ac3H11_4987 0.49 -0.1
151,516 + Ac3H11_4987 0.49 +1.8
151,516 + Ac3H11_4987 0.49 -0.9
151,516 + Ac3H11_4987 0.49 +2.1
151,516 + Ac3H11_4987 0.49 -0.3
151,516 + Ac3H11_4987 0.49 -2.1
151,516 + Ac3H11_4987 0.49 +0.1
151,517 - Ac3H11_4987 0.49 -1.6
151,559 - Ac3H11_4987 0.54 -0.2
151,676 + Ac3H11_4987 0.68 +1.3
151,676 + Ac3H11_4987 0.68 +0.5
151,676 + Ac3H11_4987 0.68 -0.1
151,676 + Ac3H11_4987 0.68 -0.1
151,676 + Ac3H11_4987 0.68 -0.3
151,676 + Ac3H11_4987 0.68 +1.0
151,676 + Ac3H11_4987 0.68 +0.2
151,677 - Ac3H11_4987 0.68 +0.3
151,677 - Ac3H11_4987 0.68 +0.1
151,677 - Ac3H11_4987 0.68 +0.8
151,677 - Ac3H11_4987 0.68 -1.3
151,677 - Ac3H11_4987 0.68 -0.6
151,677 - Ac3H11_4987 0.68 -1.0
151,677 - Ac3H11_4987 0.68 +0.4
151,677 - Ac3H11_4987 0.68 -1.2
151,677 - Ac3H11_4987 0.68 -0.5
151,677 - Ac3H11_4987 0.68 -0.2
151,677 - Ac3H11_4987 0.68 +0.6
151,677 - Ac3H11_4987 0.68 -0.1
151,774 + Ac3H11_4987 0.80 +0.5
151,775 - Ac3H11_4987 0.80 -0.2
151,852 + Ac3H11_4987 0.90 +0.5
151,906 + +0.5
151,906 + +0.7
151,907 - +0.8
151,907 - +2.7
151,907 - -0.0
151,907 - +0.7
151,907 - -0.7
152,055 + +0.5

Or see this region's nucleotide sequence