Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4793

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4791 and Ac3H11_4792 overlap by 1 nucleotidesAc3H11_4792 and Ac3H11_4793 are separated by 98 nucleotidesAc3H11_4793 and Ac3H11_4794 are separated by 181 nucleotidesAc3H11_4794 and Ac3H11_4795 are separated by 39 nucleotides Ac3H11_4791 - FAD/FMN-containing dehydrogenases, at 90,837 to 94,754 _4791 Ac3H11_4792 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 94,754 to 95,194 _4792 Ac3H11_4793 - FIG028220: hypothetical protein co-occurring with HEAT repeat protein, at 95,293 to 95,715 _4793 Ac3H11_4794 - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-), at 95,897 to 96,628 _4794 Ac3H11_4795 - putative membrane protein, at 96,668 to 97,702 _4795 Position (kb) 95 96Strain fitness (log2 ratio) -2 -1 0 1 2at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 95.181 kb on + strandat 95.278 kb on + strandat 95.278 kb on + strandat 95.279 kb on - strandat 95.279 kb on - strandat 95.279 kb on - strandat 95.419 kb on + strand, within Ac3H11_4793at 95.419 kb on + strand, within Ac3H11_4793at 95.419 kb on + strand, within Ac3H11_4793at 95.419 kb on + strand, within Ac3H11_4793at 95.420 kb on - strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strandat 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.579 kb on - strand, within Ac3H11_4793at 95.579 kb on - strand, within Ac3H11_4793at 95.579 kb on - strand, within Ac3H11_4793at 95.579 kb on - strand, within Ac3H11_4793at 95.579 kb on - strand, within Ac3H11_4793at 95.584 kb on + strand, within Ac3H11_4793at 95.585 kb on - strand, within Ac3H11_4793at 95.585 kb on - strand, within Ac3H11_4793at 95.585 kb on - strand, within Ac3H11_4793at 95.624 kb on - strand, within Ac3H11_4793at 95.769 kb on - strandat 95.863 kb on + strandat 95.863 kb on + strandat 95.864 kb on - strandat 95.864 kb on - strandat 95.896 kb on + strandat 95.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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94,862 + Ac3H11_4792 0.24 +0.7
94,862 + Ac3H11_4792 0.24 -1.0
94,862 + Ac3H11_4792 0.24 +1.1
94,862 + Ac3H11_4792 0.24 -0.2
94,862 + Ac3H11_4792 0.24 +0.1
94,862 + Ac3H11_4792 0.24 +0.4
94,862 + Ac3H11_4792 0.24 +1.2
94,862 + Ac3H11_4792 0.24 +0.2
94,862 + Ac3H11_4792 0.24 +0.9
94,862 + Ac3H11_4792 0.24 -0.0
94,862 + Ac3H11_4792 0.24 +0.4
94,862 + Ac3H11_4792 0.24 -0.2
94,862 + Ac3H11_4792 0.24 -0.1
94,863 - Ac3H11_4792 0.25 +1.6
94,863 - Ac3H11_4792 0.25 -0.3
94,863 - Ac3H11_4792 0.25 -0.6
94,863 - Ac3H11_4792 0.25 +2.2
94,863 - Ac3H11_4792 0.25 +0.3
94,863 - Ac3H11_4792 0.25 -0.1
94,863 - Ac3H11_4792 0.25 -1.6
94,863 - Ac3H11_4792 0.25 +0.6
95,181 + -1.2
95,278 + +0.8
95,278 + +0.5
95,279 - -0.1
95,279 - +0.3
95,279 - -0.0
95,419 + Ac3H11_4793 0.30 -0.4
95,419 + Ac3H11_4793 0.30 +0.5
95,419 + Ac3H11_4793 0.30 -0.2
95,419 + Ac3H11_4793 0.30 -0.2
95,420 - Ac3H11_4793 0.30 +0.3
95,521 + Ac3H11_4793 0.54 +1.4
95,521 + Ac3H11_4793 0.54 -0.0
95,521 + Ac3H11_4793 0.54 +0.6
95,521 + Ac3H11_4793 0.54 +0.4
95,521 + Ac3H11_4793 0.54 +1.4
95,521 + Ac3H11_4793 0.54 -1.3
95,521 + Ac3H11_4793 0.54 +0.1
95,521 + Ac3H11_4793 0.54 +0.7
95,521 + Ac3H11_4793 0.54 +1.9
95,521 + Ac3H11_4793 0.54 -0.7
95,521 + Ac3H11_4793 0.54 -1.1
95,522 - Ac3H11_4793 0.54 -0.6
95,522 - Ac3H11_4793 0.54 -0.8
95,522 - Ac3H11_4793 0.54 +0.5
95,522 - +0.4
95,522 - Ac3H11_4793 0.54 -0.8
95,522 - Ac3H11_4793 0.54 +0.1
95,522 - Ac3H11_4793 0.54 +0.5
95,522 - Ac3H11_4793 0.54 -1.2
95,522 - Ac3H11_4793 0.54 -0.4
95,522 - Ac3H11_4793 0.54 -0.0
95,522 - Ac3H11_4793 0.54 +0.5
95,578 + Ac3H11_4793 0.67 -1.0
95,578 + Ac3H11_4793 0.67 -0.3
95,578 + Ac3H11_4793 0.67 +0.2
95,578 + Ac3H11_4793 0.67 -1.2
95,578 + Ac3H11_4793 0.67 +2.2
95,578 + Ac3H11_4793 0.67 +0.5
95,578 + Ac3H11_4793 0.67 +1.9
95,579 - Ac3H11_4793 0.68 +0.2
95,579 - Ac3H11_4793 0.68 +1.4
95,579 - Ac3H11_4793 0.68 +0.4
95,579 - Ac3H11_4793 0.68 -0.7
95,579 - Ac3H11_4793 0.68 -1.5
95,584 + Ac3H11_4793 0.69 -0.2
95,585 - Ac3H11_4793 0.69 +0.1
95,585 - Ac3H11_4793 0.69 -0.3
95,585 - Ac3H11_4793 0.69 +0.8
95,624 - Ac3H11_4793 0.78 +0.0
95,769 - -1.8
95,863 + -1.1
95,863 + +0.5
95,864 - +2.4
95,864 - +0.4
95,896 + +0.1
95,896 + -0.0

Or see this region's nucleotide sequence