Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4654

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4652 and Ac3H11_4653 are separated by 134 nucleotidesAc3H11_4653 and Ac3H11_4654 are separated by 3 nucleotidesAc3H11_4654 and Ac3H11_4655 are separated by 45 nucleotidesAc3H11_4655 and Ac3H11_4656 are separated by 3 nucleotidesAc3H11_4656 and Ac3H11_4657 are separated by 162 nucleotides Ac3H11_4652 - Mlr6579 protein, at 260,851 to 261,609 _4652 Ac3H11_4653 - Mll3930 protein, at 261,744 to 262,130 _4653 Ac3H11_4654 - Organic hydroperoxide resistance protein, at 262,134 to 262,577 _4654 Ac3H11_4655 - Organic hydroperoxide resistance transcriptional regulator, at 262,623 to 263,087 _4655 Ac3H11_4656 - hypothetical protein, at 263,091 to 263,219 _4656 Ac3H11_4657 - Enoyl-CoA hydratase (EC 4.2.1.17), at 263,382 to 264,200 _4657 Position (kb) 262 263Strain fitness (log2 ratio) -3 -2 -1 0 1at 261.158 kb on + strand, within Ac3H11_4652at 261.159 kb on - strand, within Ac3H11_4652at 261.228 kb on - strand, within Ac3H11_4652at 261.491 kb on + strand, within Ac3H11_4652at 261.492 kb on - strand, within Ac3H11_4652at 261.695 kb on - strandat 261.701 kb on + strandat 261.713 kb on - strandat 261.714 kb on + strandat 261.714 kb on + strandat 261.715 kb on - strandat 261.958 kb on + strand, within Ac3H11_4653at 261.958 kb on + strand, within Ac3H11_4653at 261.958 kb on + strand, within Ac3H11_4653at 261.958 kb on + strand, within Ac3H11_4653at 261.958 kb on + strand, within Ac3H11_4653at 261.958 kb on + strand, within Ac3H11_4653at 261.958 kb on + strand, within Ac3H11_4653at 261.958 kb on + strand, within Ac3H11_4653at 261.958 kb on + strand, within Ac3H11_4653at 261.958 kb on + strand, within Ac3H11_4653at 261.959 kb on - strand, within Ac3H11_4653at 261.959 kb on - strand, within Ac3H11_4653at 261.959 kb on - strand, within Ac3H11_4653at 261.959 kb on - strand, within Ac3H11_4653at 262.011 kb on - strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.072 kb on + strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.073 kb on - strand, within Ac3H11_4653at 262.135 kb on + strandat 262.135 kb on + strandat 262.136 kb on - strandat 262.136 kb on - strandat 262.136 kb on - strandat 262.136 kb on - strandat 262.136 kb on - strandat 262.136 kb on - strandat 262.183 kb on + strand, within Ac3H11_4654at 262.183 kb on + strand, within Ac3H11_4654at 262.184 kb on - strand, within Ac3H11_4654at 262.276 kb on + strand, within Ac3H11_4654at 262.525 kb on + strand, within Ac3H11_4654at 262.525 kb on + strand, within Ac3H11_4654at 262.526 kb on - strand, within Ac3H11_4654at 262.939 kb on + strand, within Ac3H11_4655at 262.939 kb on + strand, within Ac3H11_4655at 262.939 kb on + strand, within Ac3H11_4655at 262.940 kb on - strand, within Ac3H11_4655at 262.940 kb on - strand, within Ac3H11_4655at 262.940 kb on - strand, within Ac3H11_4655at 262.940 kb on - strand, within Ac3H11_4655at 262.948 kb on + strand, within Ac3H11_4655at 262.948 kb on + strand, within Ac3H11_4655at 262.948 kb on + strand, within Ac3H11_4655at 262.981 kb on + strand, within Ac3H11_4655at 262.981 kb on + strand, within Ac3H11_4655at 262.981 kb on + strand, within Ac3H11_4655at 262.981 kb on + strand, within Ac3H11_4655at 262.981 kb on + strand, within Ac3H11_4655at 262.982 kb on - strand, within Ac3H11_4655at 262.982 kb on - strand, within Ac3H11_4655at 263.011 kb on + strand, within Ac3H11_4655at 263.012 kb on - strand, within Ac3H11_4655at 263.194 kb on + strand, within Ac3H11_4656at 263.194 kb on + strand, within Ac3H11_4656at 263.195 kb on - strand, within Ac3H11_4656at 263.195 kb on - strand, within Ac3H11_4656at 263.195 kb on - strand, within Ac3H11_4656at 263.195 kb on - strand, within Ac3H11_4656at 263.208 kb on + strandat 263.208 kb on + strandat 263.208 kb on + strandat 263.208 kb on + strandat 263.208 kb on + strandat 263.209 kb on - strandat 263.209 kb on - strandat 263.209 kb on - strandat 263.209 kb on - strandat 263.209 kb on - strandat 263.209 kb on - strandat 263.217 kb on + strandat 263.217 kb on + strandat 263.217 kb on + strandat 263.218 kb on - strandat 263.218 kb on - strandat 263.218 kb on - strandat 263.218 kb on - strandat 263.261 kb on - strandat 263.261 kb on - strandat 263.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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261,158 + Ac3H11_4652 0.40 +0.7
261,159 - Ac3H11_4652 0.41 -0.2
261,228 - Ac3H11_4652 0.50 +0.5
261,491 + Ac3H11_4652 0.84 -0.7
261,492 - Ac3H11_4652 0.84 -0.4
261,695 - +1.0
261,701 + -0.5
261,713 - -0.6
261,714 + -0.4
261,714 + -0.4
261,715 - +0.6
261,958 + Ac3H11_4653 0.55 +0.4
261,958 + Ac3H11_4653 0.55 +0.7
261,958 + Ac3H11_4653 0.55 -1.9
261,958 + Ac3H11_4653 0.55 -1.0
261,958 + Ac3H11_4653 0.55 -1.1
261,958 + Ac3H11_4653 0.55 +1.1
261,958 + Ac3H11_4653 0.55 -0.9
261,958 + Ac3H11_4653 0.55 -0.2
261,958 + Ac3H11_4653 0.55 -1.8
261,958 + Ac3H11_4653 0.55 -0.5
261,959 - Ac3H11_4653 0.56 +0.5
261,959 - Ac3H11_4653 0.56 -0.5
261,959 - Ac3H11_4653 0.56 -0.8
261,959 - Ac3H11_4653 0.56 -0.3
262,011 - Ac3H11_4653 0.69 +0.5
262,072 + Ac3H11_4653 0.85 -1.0
262,072 + Ac3H11_4653 0.85 +0.6
262,072 + Ac3H11_4653 0.85 +0.2
262,072 + Ac3H11_4653 0.85 +0.8
262,072 + Ac3H11_4653 0.85 +0.8
262,072 + Ac3H11_4653 0.85 -0.8
262,072 + Ac3H11_4653 0.85 +0.2
262,072 + Ac3H11_4653 0.85 -0.1
262,072 + Ac3H11_4653 0.85 -0.3
262,072 + Ac3H11_4653 0.85 -0.5
262,072 + Ac3H11_4653 0.85 +0.5
262,072 + Ac3H11_4653 0.85 -1.4
262,072 + Ac3H11_4653 0.85 -0.8
262,073 - Ac3H11_4653 0.85 +0.4
262,073 - Ac3H11_4653 0.85 -0.7
262,073 - Ac3H11_4653 0.85 +0.2
262,073 - Ac3H11_4653 0.85 +1.7
262,073 - Ac3H11_4653 0.85 +1.7
262,073 - Ac3H11_4653 0.85 +0.3
262,073 - Ac3H11_4653 0.85 -1.0
262,073 - Ac3H11_4653 0.85 -0.4
262,073 - Ac3H11_4653 0.85 +0.2
262,073 - Ac3H11_4653 0.85 +0.5
262,073 - Ac3H11_4653 0.85 -0.2
262,073 - Ac3H11_4653 0.85 +0.5
262,073 - Ac3H11_4653 0.85 -0.2
262,073 - Ac3H11_4653 0.85 -0.7
262,073 - Ac3H11_4653 0.85 +0.3
262,135 + -1.8
262,135 + +1.1
262,136 - +0.6
262,136 - -2.1
262,136 - +0.2
262,136 - +0.3
262,136 - -0.3
262,136 - +0.2
262,183 + Ac3H11_4654 0.11 -1.4
262,183 + Ac3H11_4654 0.11 -0.7
262,184 - Ac3H11_4654 0.11 -0.9
262,276 + Ac3H11_4654 0.32 -0.0
262,525 + Ac3H11_4654 0.88 -1.1
262,525 + Ac3H11_4654 0.88 -3.0
262,526 - Ac3H11_4654 0.88 -1.0
262,939 + Ac3H11_4655 0.68 +0.4
262,939 + Ac3H11_4655 0.68 -1.3
262,939 + Ac3H11_4655 0.68 -1.5
262,940 - Ac3H11_4655 0.68 -0.3
262,940 - Ac3H11_4655 0.68 -0.2
262,940 - Ac3H11_4655 0.68 -1.9
262,940 - Ac3H11_4655 0.68 +1.4
262,948 + Ac3H11_4655 0.70 +0.3
262,948 + Ac3H11_4655 0.70 -1.1
262,948 + Ac3H11_4655 0.70 -0.6
262,981 + Ac3H11_4655 0.77 +0.6
262,981 + Ac3H11_4655 0.77 -0.7
262,981 + Ac3H11_4655 0.77 +1.5
262,981 + Ac3H11_4655 0.77 -0.2
262,981 + Ac3H11_4655 0.77 -0.7
262,982 - Ac3H11_4655 0.77 +0.8
262,982 - Ac3H11_4655 0.77 +0.3
263,011 + Ac3H11_4655 0.83 +0.1
263,012 - Ac3H11_4655 0.84 -2.4
263,194 + Ac3H11_4656 0.80 -0.1
263,194 + Ac3H11_4656 0.80 -0.2
263,195 - Ac3H11_4656 0.81 +0.7
263,195 - Ac3H11_4656 0.81 -1.5
263,195 - Ac3H11_4656 0.81 +0.8
263,195 - Ac3H11_4656 0.81 +0.7
263,208 + -0.4
263,208 + -0.4
263,208 + -2.5
263,208 + -0.7
263,208 + +0.4
263,209 - +0.2
263,209 - -0.4
263,209 - -0.9
263,209 - +0.4
263,209 - +0.2
263,209 - -0.8
263,217 + -0.8
263,217 + -1.4
263,217 + +0.2
263,218 - -1.3
263,218 - +0.7
263,218 - +0.1
263,218 - -0.6
263,261 - -2.4
263,261 - -0.9
263,275 - -0.5

Or see this region's nucleotide sequence