Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_447

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_446 and Ac3H11_447 overlap by 39 nucleotidesAc3H11_447 and Ac3H11_448 overlap by 28 nucleotides Ac3H11_446 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 133,320 to 135,545 _446 Ac3H11_447 - hypothetical protein, at 135,507 to 135,725 _447 Ac3H11_448 - Sensory box/GGDEF family protein, at 135,698 to 138,649 _448 Position (kb) 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 134.623 kb on + strand, within Ac3H11_446at 134.624 kb on - strand, within Ac3H11_446at 134.624 kb on - strand, within Ac3H11_446at 134.638 kb on + strand, within Ac3H11_446at 134.639 kb on - strand, within Ac3H11_446at 134.691 kb on + strand, within Ac3H11_446at 134.905 kb on + strand, within Ac3H11_446at 134.905 kb on + strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.906 kb on - strand, within Ac3H11_446at 134.933 kb on - strand, within Ac3H11_446at 134.946 kb on + strand, within Ac3H11_446at 134.946 kb on + strand, within Ac3H11_446at 134.946 kb on + strand, within Ac3H11_446at 134.946 kb on + strand, within Ac3H11_446at 134.947 kb on - strand, within Ac3H11_446at 134.947 kb on - strand, within Ac3H11_446at 134.975 kb on - strand, within Ac3H11_446at 134.999 kb on + strand, within Ac3H11_446at 134.999 kb on + strand, within Ac3H11_446at 134.999 kb on + strand, within Ac3H11_446at 134.999 kb on + strand, within Ac3H11_446at 134.999 kb on + strand, within Ac3H11_446at 135.000 kb on - strand, within Ac3H11_446at 135.413 kb on - strandat 135.459 kb on - strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.462 kb on + strandat 135.463 kb on - strandat 135.463 kb on - strandat 135.463 kb on - strandat 135.463 kb on - strandat 135.463 kb on - strandat 135.463 kb on - strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.524 kb on + strandat 135.525 kb on - strandat 135.525 kb on - strandat 135.525 kb on - strandat 135.525 kb on - strandat 135.525 kb on - strandat 135.525 kb on - strandat 135.528 kb on + strandat 135.529 kb on - strandat 135.529 kb on - strandat 135.529 kb on - strandat 135.559 kb on + strand, within Ac3H11_447at 135.559 kb on + strand, within Ac3H11_447at 135.560 kb on - strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.572 kb on + strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.573 kb on - strand, within Ac3H11_447at 135.582 kb on + strand, within Ac3H11_447at 135.631 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.645 kb on + strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.646 kb on - strand, within Ac3H11_447at 135.653 kb on + strand, within Ac3H11_447at 135.654 kb on - strand, within Ac3H11_447at 135.662 kb on + strand, within Ac3H11_447at 135.723 kb on + strandat 135.724 kb on - strandat 135.724 kb on - strandat 135.724 kb on - strandat 135.765 kb on + strandat 135.766 kb on - strandat 135.838 kb on + strandat 135.838 kb on + strandat 135.839 kb on - strandat 135.839 kb on - strandat 135.839 kb on - strandat 135.948 kb on + strandat 135.949 kb on - strandat 135.949 kb on - strandat 135.969 kb on + strandat 135.984 kb on + strandat 135.984 kb on + strandat 136.410 kb on + strand, within Ac3H11_448at 136.411 kb on - strand, within Ac3H11_448at 136.542 kb on + strand, within Ac3H11_448at 136.542 kb on + strand, within Ac3H11_448at 136.543 kb on - strand, within Ac3H11_448at 136.566 kb on + strand, within Ac3H11_448at 136.599 kb on + strand, within Ac3H11_448at 136.638 kb on + strand, within Ac3H11_448at 136.639 kb on - strand, within Ac3H11_448at 136.646 kb on + strand, within Ac3H11_448at 136.647 kb on - strand, within Ac3H11_448at 136.647 kb on - strand, within Ac3H11_448at 136.647 kb on - strand, within Ac3H11_448at 136.664 kb on + strand, within Ac3H11_448at 136.665 kb on - strand, within Ac3H11_448

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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134,623 + Ac3H11_446 0.59 +1.1
134,624 - Ac3H11_446 0.59 +1.2
134,624 - Ac3H11_446 0.59 +1.7
134,638 + Ac3H11_446 0.59 +2.3
134,639 - Ac3H11_446 0.59 -1.6
134,691 + Ac3H11_446 0.62 -0.2
134,905 + Ac3H11_446 0.71 +1.7
134,905 + Ac3H11_446 0.71 +1.7
134,906 - Ac3H11_446 0.71 +1.9
134,906 - Ac3H11_446 0.71 +0.2
134,906 - Ac3H11_446 0.71 +2.6
134,906 - Ac3H11_446 0.71 +0.7
134,906 - Ac3H11_446 0.71 +0.5
134,906 - Ac3H11_446 0.71 +1.2
134,906 - Ac3H11_446 0.71 +2.5
134,906 - Ac3H11_446 0.71 +1.7
134,906 - Ac3H11_446 0.71 +1.8
134,933 - Ac3H11_446 0.72 +1.3
134,946 + Ac3H11_446 0.73 +0.7
134,946 + Ac3H11_446 0.73 +0.5
134,946 + Ac3H11_446 0.73 +1.1
134,946 + Ac3H11_446 0.73 +1.5
134,947 - Ac3H11_446 0.73 +1.1
134,947 - Ac3H11_446 0.73 +2.3
134,975 - Ac3H11_446 0.74 +1.8
134,999 + Ac3H11_446 0.75 +1.4
134,999 + Ac3H11_446 0.75 +1.0
134,999 + Ac3H11_446 0.75 +2.0
134,999 + Ac3H11_446 0.75 +1.7
134,999 + Ac3H11_446 0.75 +2.1
135,000 - Ac3H11_446 0.75 +1.0
135,413 - -2.0
135,459 - +0.4
135,462 + +1.2
135,462 + +0.8
135,462 + +1.5
135,462 + +0.4
135,462 + +1.6
135,462 + +1.3
135,462 + +0.5
135,463 - +1.7
135,463 - +0.4
135,463 - +3.7
135,463 - -0.3
135,463 - -0.1
135,463 - -0.1
135,524 + +1.5
135,524 + +2.1
135,524 + +0.8
135,524 + +1.4
135,524 + +1.1
135,524 + +1.9
135,524 + +1.3
135,524 + +1.4
135,524 + +1.8
135,525 - -0.5
135,525 - -1.1
135,525 - +0.4
135,525 - +1.3
135,525 - +1.5
135,525 - -0.8
135,528 + +0.7
135,529 - +0.6
135,529 - +2.1
135,529 - +0.1
135,559 + Ac3H11_447 0.24 +1.4
135,559 + Ac3H11_447 0.24 +0.1
135,560 - Ac3H11_447 0.24 -0.7
135,572 + Ac3H11_447 0.30 +1.0
135,572 + Ac3H11_447 0.30 +0.6
135,572 + Ac3H11_447 0.30 +0.5
135,572 + Ac3H11_447 0.30 +1.0
135,572 + Ac3H11_447 0.30 +1.2
135,572 + Ac3H11_447 0.30 +2.2
135,572 + Ac3H11_447 0.30 +0.5
135,573 - Ac3H11_447 0.30 +1.3
135,573 - Ac3H11_447 0.30 +1.5
135,573 - Ac3H11_447 0.30 -1.0
135,573 - Ac3H11_447 0.30 -0.1
135,573 - Ac3H11_447 0.30 +1.0
135,573 - Ac3H11_447 0.30 +0.9
135,573 - Ac3H11_447 0.30 +0.4
135,582 + Ac3H11_447 0.34 +0.7
135,631 + Ac3H11_447 0.57 +0.0
135,645 + Ac3H11_447 0.63 +1.5
135,645 + Ac3H11_447 0.63 +1.0
135,645 + Ac3H11_447 0.63 +0.4
135,645 + Ac3H11_447 0.63 -2.8
135,645 + Ac3H11_447 0.63 +3.3
135,645 + Ac3H11_447 0.63 +0.2
135,646 - Ac3H11_447 0.63 -0.4
135,646 - Ac3H11_447 0.63 -2.3
135,646 - Ac3H11_447 0.63 -0.5
135,646 - Ac3H11_447 0.63 -0.6
135,646 - Ac3H11_447 0.63 -1.0
135,646 - Ac3H11_447 0.63 +0.3
135,653 + Ac3H11_447 0.67 +1.0
135,654 - Ac3H11_447 0.67 -0.8
135,662 + Ac3H11_447 0.71 -0.1
135,723 + -0.1
135,724 - -0.2
135,724 - -1.7
135,724 - -0.5
135,765 + -0.6
135,766 - -0.4
135,838 + -0.9
135,838 + -0.6
135,839 - -0.1
135,839 - +1.9
135,839 - -0.6
135,948 + +0.2
135,949 - -0.2
135,949 - +0.2
135,969 + -0.5
135,984 + +0.1
135,984 + -0.8
136,410 + Ac3H11_448 0.24 +0.5
136,411 - Ac3H11_448 0.24 -0.4
136,542 + Ac3H11_448 0.29 -0.1
136,542 + Ac3H11_448 0.29 +0.2
136,543 - Ac3H11_448 0.29 +1.3
136,566 + Ac3H11_448 0.29 -1.7
136,599 + Ac3H11_448 0.31 -1.5
136,638 + Ac3H11_448 0.32 -0.2
136,639 - Ac3H11_448 0.32 +0.5
136,646 + Ac3H11_448 0.32 -0.2
136,647 - Ac3H11_448 0.32 +0.7
136,647 - Ac3H11_448 0.32 +0.5
136,647 - Ac3H11_448 0.32 +2.1
136,664 + Ac3H11_448 0.33 -0.1
136,665 - Ac3H11_448 0.33 +0.8

Or see this region's nucleotide sequence