Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3958 and Ac3H11_3959 are separated by 44 nucleotides Ac3H11_3959 and Ac3H11_3960 are separated by 149 nucleotides Ac3H11_3960 and Ac3H11_3961 overlap by 105 nucleotides
Ac3H11_3958 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 182,693 to 183,592
_3958
Ac3H11_3959 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 183,637 to 184,365
_3959
Ac3H11_3960 - hypothetical protein, at 184,515 to 184,664
_3960
Ac3H11_3961 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 184,560 to 186,098
_3961
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1 at 182.734 kb on - strand at 182.734 kb on - strand at 182.734 kb on - strand at 182.734 kb on - strand at 182.880 kb on + strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.960 kb on - strand, within Ac3H11_3958 at 183.042 kb on + strand, within Ac3H11_3958 at 183.084 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.216 kb on + strand, within Ac3H11_3958 at 183.217 kb on - strand, within Ac3H11_3958 at 183.414 kb on + strand, within Ac3H11_3958 at 183.415 kb on - strand, within Ac3H11_3958 at 183.539 kb on + strand at 183.539 kb on + strand at 183.595 kb on + strand at 183.595 kb on + strand at 183.595 kb on + strand at 183.596 kb on - strand at 183.954 kb on + strand, within Ac3H11_3959 at 183.954 kb on + strand, within Ac3H11_3959 at 184.222 kb on + strand, within Ac3H11_3959 at 184.222 kb on + strand, within Ac3H11_3959 at 184.223 kb on - strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.259 kb on - strand, within Ac3H11_3959 at 184.259 kb on - strand, within Ac3H11_3959 at 184.460 kb on + strand at 184.460 kb on + strand at 184.460 kb on + strand at 184.460 kb on + strand at 184.460 kb on + strand at 184.461 kb on - strand at 184.465 kb on - strand at 184.707 kb on + strand at 185.112 kb on - strand, within Ac3H11_3961 at 185.112 kb on - strand, within Ac3H11_3961 at 185.275 kb on + strand, within Ac3H11_3961
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 182,734 - +0.5 182,734 - -1.9 182,734 - +0.4 182,734 - -0.4 182,880 + Ac3H11_3958 0.21 -0.7 182,881 - Ac3H11_3958 0.21 +0.1 182,881 - Ac3H11_3958 0.21 -1.6 182,881 - Ac3H11_3958 0.21 +0.5 182,881 - Ac3H11_3958 0.21 +1.3 182,881 - Ac3H11_3958 0.21 -0.3 182,946 + Ac3H11_3958 0.28 +0.1 182,946 + Ac3H11_3958 0.28 -0.6 182,946 + Ac3H11_3958 0.28 -0.6 182,947 - Ac3H11_3958 0.28 -0.5 182,947 - Ac3H11_3958 0.28 -0.8 182,947 - Ac3H11_3958 0.28 +0.5 182,960 - Ac3H11_3958 0.30 +0.7 183,042 + Ac3H11_3958 0.39 -0.4 183,084 + Ac3H11_3958 0.43 -0.1 183,207 + Ac3H11_3958 0.57 -0.3 183,207 + Ac3H11_3958 0.57 +0.5 183,207 + Ac3H11_3958 0.57 +1.0 183,207 + Ac3H11_3958 0.57 +0.6 183,216 + Ac3H11_3958 0.58 +0.7 183,217 - Ac3H11_3958 0.58 +0.4 183,414 + Ac3H11_3958 0.80 +0.1 183,415 - Ac3H11_3958 0.80 +0.2 183,539 + -0.7 183,539 + +1.2 183,595 + -1.0 183,595 + +0.6 183,595 + -0.7 183,596 - +0.2 183,954 + Ac3H11_3959 0.43 +0.0 183,954 + Ac3H11_3959 0.43 -0.5 184,222 + Ac3H11_3959 0.80 +0.3 184,222 + Ac3H11_3959 0.80 -1.2 184,223 - Ac3H11_3959 0.80 -1.7 184,258 + Ac3H11_3959 0.85 -2.7 184,258 + Ac3H11_3959 0.85 -0.6 184,258 + Ac3H11_3959 0.85 -1.1 184,258 + Ac3H11_3959 0.85 -1.3 184,259 - Ac3H11_3959 0.85 -2.2 184,259 - Ac3H11_3959 0.85 -1.8 184,460 + +1.0 184,460 + -0.4 184,460 + +0.0 184,460 + -1.6 184,460 + -0.1 184,461 - -0.2 184,465 - -0.5 184,707 + -1.7 185,112 - Ac3H11_3961 0.36 -0.4 185,112 - Ac3H11_3961 0.36 -0.2 185,275 + Ac3H11_3961 0.46 +1.1
Or see this region's nucleotide sequence