Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3356 and Ac3H11_3357 are separated by 56 nucleotides Ac3H11_3357 and Ac3H11_3358 are separated by 160 nucleotides
Ac3H11_3356 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 36,690 to 37,811
_3356
Ac3H11_3357 - Zn-dependent protease with chaperone function PA4632, at 37,868 to 38,722
_3357
Ac3H11_3358 - AmpG permease, at 38,883 to 40,379
_3358
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.870 kb on + strand, within Ac3H11_3356 at 36.871 kb on - strand, within Ac3H11_3356 at 36.939 kb on + strand, within Ac3H11_3356 at 36.939 kb on + strand, within Ac3H11_3356 at 36.939 kb on + strand, within Ac3H11_3356 at 36.939 kb on + strand, within Ac3H11_3356 at 36.939 kb on + strand, within Ac3H11_3356 at 36.939 kb on + strand, within Ac3H11_3356 at 36.939 kb on + strand, within Ac3H11_3356 at 36.940 kb on - strand, within Ac3H11_3356 at 36.940 kb on - strand, within Ac3H11_3356 at 36.940 kb on - strand, within Ac3H11_3356 at 36.940 kb on - strand, within Ac3H11_3356 at 36.940 kb on - strand, within Ac3H11_3356 at 36.940 kb on - strand, within Ac3H11_3356 at 36.951 kb on + strand at 36.952 kb on - strand, within Ac3H11_3356 at 36.952 kb on - strand, within Ac3H11_3356 at 36.952 kb on - strand, within Ac3H11_3356 at 37.065 kb on + strand, within Ac3H11_3356 at 37.065 kb on + strand, within Ac3H11_3356 at 37.065 kb on + strand, within Ac3H11_3356 at 37.068 kb on + strand, within Ac3H11_3356 at 37.068 kb on + strand, within Ac3H11_3356 at 37.068 kb on + strand, within Ac3H11_3356 at 37.068 kb on + strand, within Ac3H11_3356 at 37.069 kb on - strand, within Ac3H11_3356 at 37.069 kb on - strand, within Ac3H11_3356 at 37.069 kb on - strand, within Ac3H11_3356 at 37.069 kb on - strand, within Ac3H11_3356 at 37.069 kb on - strand, within Ac3H11_3356 at 37.069 kb on - strand, within Ac3H11_3356 at 37.149 kb on + strand, within Ac3H11_3356 at 37.149 kb on + strand, within Ac3H11_3356 at 37.150 kb on - strand, within Ac3H11_3356 at 37.150 kb on - strand, within Ac3H11_3356 at 37.150 kb on - strand, within Ac3H11_3356 at 37.152 kb on + strand, within Ac3H11_3356 at 37.152 kb on + strand, within Ac3H11_3356 at 37.152 kb on + strand, within Ac3H11_3356 at 37.152 kb on + strand, within Ac3H11_3356 at 37.152 kb on + strand, within Ac3H11_3356 at 37.152 kb on + strand, within Ac3H11_3356 at 37.152 kb on + strand, within Ac3H11_3356 at 37.152 kb on + strand, within Ac3H11_3356 at 37.153 kb on - strand, within Ac3H11_3356 at 37.153 kb on - strand, within Ac3H11_3356 at 37.153 kb on - strand, within Ac3H11_3356 at 37.153 kb on - strand, within Ac3H11_3356 at 37.153 kb on - strand, within Ac3H11_3356 at 37.281 kb on + strand, within Ac3H11_3356 at 37.282 kb on - strand, within Ac3H11_3356 at 37.371 kb on + strand, within Ac3H11_3356 at 37.371 kb on + strand, within Ac3H11_3356 at 37.371 kb on + strand, within Ac3H11_3356 at 37.371 kb on + strand, within Ac3H11_3356 at 37.371 kb on + strand, within Ac3H11_3356 at 37.388 kb on + strand, within Ac3H11_3356 at 37.388 kb on + strand, within Ac3H11_3356 at 37.388 kb on + strand, within Ac3H11_3356 at 37.388 kb on + strand, within Ac3H11_3356 at 37.388 kb on + strand, within Ac3H11_3356 at 37.388 kb on + strand, within Ac3H11_3356 at 37.389 kb on - strand, within Ac3H11_3356 at 37.389 kb on - strand, within Ac3H11_3356 at 37.389 kb on - strand, within Ac3H11_3356 at 37.389 kb on - strand, within Ac3H11_3356 at 37.389 kb on - strand, within Ac3H11_3356 at 37.389 kb on - strand, within Ac3H11_3356 at 37.662 kb on + strand, within Ac3H11_3356 at 37.662 kb on + strand, within Ac3H11_3356 at 37.663 kb on - strand, within Ac3H11_3356 at 37.767 kb on + strand at 37.767 kb on + strand at 37.767 kb on + strand at 37.767 kb on + strand at 37.767 kb on + strand at 37.768 kb on - strand at 37.893 kb on + strand at 37.893 kb on + strand at 37.894 kb on - strand at 37.894 kb on - strand at 37.894 kb on - strand at 38.322 kb on + strand, within Ac3H11_3357 at 38.322 kb on + strand, within Ac3H11_3357 at 38.322 kb on + strand, within Ac3H11_3357 at 38.323 kb on - strand, within Ac3H11_3357 at 38.323 kb on - strand, within Ac3H11_3357 at 38.323 kb on - strand, within Ac3H11_3357 at 38.323 kb on - strand, within Ac3H11_3357 at 38.323 kb on - strand, within Ac3H11_3357 at 38.323 kb on - strand, within Ac3H11_3357 at 38.323 kb on - strand, within Ac3H11_3357 at 38.323 kb on - strand, within Ac3H11_3357 at 38.532 kb on + strand, within Ac3H11_3357 at 38.722 kb on + strand at 38.722 kb on + strand at 38.722 kb on + strand at 38.722 kb on + strand at 38.722 kb on + strand at 38.722 kb on + strand at 38.722 kb on + strand at 38.722 kb on + strand at 38.722 kb on + strand at 38.723 kb on - strand at 38.723 kb on - strand at 38.723 kb on - strand at 38.723 kb on - strand at 38.751 kb on + strand at 38.752 kb on - strand at 38.752 kb on - strand at 38.818 kb on + strand at 38.819 kb on - strand at 38.819 kb on - strand at 38.832 kb on - strand at 38.832 kb on - strand at 38.832 kb on - strand at 38.832 kb on - strand at 38.834 kb on + strand at 38.834 kb on + strand at 38.834 kb on + strand at 38.835 kb on - strand at 39.030 kb on + strand at 39.031 kb on - strand at 39.031 kb on - strand at 39.180 kb on + strand, within Ac3H11_3358 at 39.180 kb on + strand, within Ac3H11_3358 at 39.181 kb on - strand, within Ac3H11_3358 at 39.459 kb on + strand, within Ac3H11_3358 at 39.571 kb on + strand, within Ac3H11_3358 at 39.627 kb on + strand, within Ac3H11_3358 at 39.628 kb on - strand, within Ac3H11_3358 at 39.628 kb on - strand, within Ac3H11_3358
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 36,870 + Ac3H11_3356 0.16 +0.3 36,871 - Ac3H11_3356 0.16 +0.3 36,939 + Ac3H11_3356 0.22 -0.6 36,939 + Ac3H11_3356 0.22 -0.6 36,939 + Ac3H11_3356 0.22 -0.0 36,939 + Ac3H11_3356 0.22 +0.3 36,939 + Ac3H11_3356 0.22 -1.6 36,939 + Ac3H11_3356 0.22 -0.7 36,939 + Ac3H11_3356 0.22 +0.6 36,940 - Ac3H11_3356 0.22 -0.6 36,940 - Ac3H11_3356 0.22 +1.4 36,940 - Ac3H11_3356 0.22 -0.4 36,940 - Ac3H11_3356 0.22 +1.4 36,940 - Ac3H11_3356 0.22 -0.6 36,940 - Ac3H11_3356 0.22 -1.6 36,951 + +2.1 36,952 - Ac3H11_3356 0.23 -0.1 36,952 - Ac3H11_3356 0.23 +1.6 36,952 - Ac3H11_3356 0.23 +0.2 37,065 + Ac3H11_3356 0.33 -1.4 37,065 + Ac3H11_3356 0.33 +0.2 37,065 + Ac3H11_3356 0.33 +0.2 37,068 + Ac3H11_3356 0.34 +0.8 37,068 + Ac3H11_3356 0.34 -0.1 37,068 + Ac3H11_3356 0.34 +0.2 37,068 + Ac3H11_3356 0.34 +0.3 37,069 - Ac3H11_3356 0.34 -2.1 37,069 - Ac3H11_3356 0.34 -0.2 37,069 - Ac3H11_3356 0.34 -0.2 37,069 - Ac3H11_3356 0.34 -0.2 37,069 - Ac3H11_3356 0.34 +0.7 37,069 - Ac3H11_3356 0.34 -1.5 37,149 + Ac3H11_3356 0.41 -0.1 37,149 + Ac3H11_3356 0.41 -0.3 37,150 - Ac3H11_3356 0.41 -0.1 37,150 - Ac3H11_3356 0.41 +0.7 37,150 - Ac3H11_3356 0.41 +0.1 37,152 + Ac3H11_3356 0.41 +0.9 37,152 + Ac3H11_3356 0.41 -0.3 37,152 + Ac3H11_3356 0.41 -0.0 37,152 + Ac3H11_3356 0.41 -0.3 37,152 + Ac3H11_3356 0.41 +0.9 37,152 + Ac3H11_3356 0.41 +0.2 37,152 + Ac3H11_3356 0.41 -0.1 37,152 + Ac3H11_3356 0.41 -0.9 37,153 - Ac3H11_3356 0.41 -0.9 37,153 - Ac3H11_3356 0.41 +0.1 37,153 - Ac3H11_3356 0.41 -0.9 37,153 - Ac3H11_3356 0.41 +0.1 37,153 - Ac3H11_3356 0.41 -0.6 37,281 + Ac3H11_3356 0.53 -0.5 37,282 - Ac3H11_3356 0.53 -0.0 37,371 + Ac3H11_3356 0.61 +0.1 37,371 + Ac3H11_3356 0.61 +0.9 37,371 + Ac3H11_3356 0.61 +0.2 37,371 + Ac3H11_3356 0.61 +0.7 37,371 + Ac3H11_3356 0.61 -1.0 37,388 + Ac3H11_3356 0.62 +0.9 37,388 + Ac3H11_3356 0.62 -2.3 37,388 + Ac3H11_3356 0.62 -0.8 37,388 + Ac3H11_3356 0.62 +0.8 37,388 + Ac3H11_3356 0.62 +0.2 37,388 + Ac3H11_3356 0.62 -0.3 37,389 - Ac3H11_3356 0.62 -1.1 37,389 - Ac3H11_3356 0.62 +0.3 37,389 - Ac3H11_3356 0.62 -0.6 37,389 - Ac3H11_3356 0.62 +0.1 37,389 - Ac3H11_3356 0.62 +0.3 37,389 - Ac3H11_3356 0.62 +1.2 37,662 + Ac3H11_3356 0.87 -0.2 37,662 + Ac3H11_3356 0.87 +0.2 37,663 - Ac3H11_3356 0.87 +1.3 37,767 + +0.4 37,767 + +0.7 37,767 + +0.9 37,767 + +1.0 37,767 + -0.7 37,768 - +0.0 37,893 + +1.3 37,893 + +0.9 37,894 - +0.2 37,894 - -0.5 37,894 - -1.1 38,322 + Ac3H11_3357 0.53 -0.8 38,322 + Ac3H11_3357 0.53 -0.5 38,322 + Ac3H11_3357 0.53 +1.1 38,323 - Ac3H11_3357 0.53 -0.5 38,323 - Ac3H11_3357 0.53 +0.2 38,323 - Ac3H11_3357 0.53 +1.5 38,323 - Ac3H11_3357 0.53 -0.4 38,323 - Ac3H11_3357 0.53 +0.6 38,323 - Ac3H11_3357 0.53 +0.2 38,323 - Ac3H11_3357 0.53 +0.4 38,323 - Ac3H11_3357 0.53 +2.3 38,532 + Ac3H11_3357 0.78 -1.1 38,722 + -1.0 38,722 + +0.5 38,722 + +0.9 38,722 + +0.4 38,722 + +0.4 38,722 + -0.2 38,722 + -0.6 38,722 + +0.9 38,722 + -0.4 38,723 - +0.0 38,723 - +0.8 38,723 - -0.3 38,723 - +0.9 38,751 + +0.4 38,752 - -1.1 38,752 - +0.1 38,818 + +0.1 38,819 - +1.2 38,819 - +1.2 38,832 - -0.1 38,832 - -0.2 38,832 - -0.2 38,832 - -2.2 38,834 + +0.2 38,834 + +0.3 38,834 + -1.7 38,835 - +1.3 39,030 + +0.8 39,031 - -2.6 39,031 - -1.8 39,180 + Ac3H11_3358 0.20 -0.6 39,180 + Ac3H11_3358 0.20 -1.8 39,181 - Ac3H11_3358 0.20 -2.4 39,459 + Ac3H11_3358 0.38 +1.1 39,571 + Ac3H11_3358 0.46 +1.1 39,627 + Ac3H11_3358 0.50 -0.1 39,628 - Ac3H11_3358 0.50 -0.2 39,628 - Ac3H11_3358 0.50 -0.6
Or see this region's nucleotide sequence