Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3100

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3100 and Ac3H11_3101 are separated by 138 nucleotidesAc3H11_3101 and Ac3H11_3102 are separated by 42 nucleotides Ac3H11_3100 - Transcriptional regulator, AsnC family, at 181 to 618 _3100 Ac3H11_3101 - protein of unknown function DUF1234, at 757 to 1,314 _3101 Ac3H11_3102 - Lipoprotein, putative, at 1,357 to 1,980 _3102 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.106 kb on + strandat 0.106 kb on + strandat 0.182 kb on + strandat 0.378 kb on - strand, within Ac3H11_3100at 0.378 kb on - strand, within Ac3H11_3100at 0.709 kb on + strandat 0.793 kb on + strandat 0.793 kb on + strandat 0.794 kb on - strandat 0.794 kb on - strandat 0.794 kb on - strandat 1.166 kb on - strand, within Ac3H11_3101at 1.327 kb on + strandat 1.368 kb on + strandat 1.394 kb on + strandat 1.425 kb on - strand, within Ac3H11_3102at 1.425 kb on - strand, within Ac3H11_3102at 1.556 kb on + strand, within Ac3H11_3102at 1.556 kb on + strand, within Ac3H11_3102at 1.556 kb on + strand, within Ac3H11_3102at 1.557 kb on - strand, within Ac3H11_3102at 1.557 kb on - strand, within Ac3H11_3102at 1.557 kb on - strand, within Ac3H11_3102at 1.557 kb on - strand, within Ac3H11_3102

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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106 + +0.4
106 + -1.3
182 + -0.5
378 - Ac3H11_3100 0.45 +0.8
378 - Ac3H11_3100 0.45 -0.1
709 + +0.1
793 + +0.2
793 + +0.7
794 - -0.0
794 - -1.8
794 - +0.6
1,166 - Ac3H11_3101 0.73 +1.3
1,327 + -1.7
1,368 + -0.2
1,394 + -0.9
1,425 - Ac3H11_3102 0.11 -1.2
1,425 - Ac3H11_3102 0.11 -1.3
1,556 + Ac3H11_3102 0.32 +0.0
1,556 + Ac3H11_3102 0.32 -3.2
1,556 + Ac3H11_3102 0.32 -2.0
1,557 - Ac3H11_3102 0.32 -2.9
1,557 - Ac3H11_3102 0.32 -1.5
1,557 - Ac3H11_3102 0.32 -2.9
1,557 - Ac3H11_3102 0.32 +0.1

Or see this region's nucleotide sequence