Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2270

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2269 and Ac3H11_2270 overlap by 8 nucleotidesAc3H11_2270 and Ac3H11_2271 are separated by 21 nucleotides Ac3H11_2269 - Sensory box histidine kinase/response regulator, at 501,557 to 504,610 _2269 Ac3H11_2270 - Pole remodelling regulatory diguanylate cyclase, at 504,603 to 505,772 _2270 Ac3H11_2271 - Response regulator, at 505,794 to 506,711 _2271 Position (kb) 504 505 506Strain fitness (log2 ratio) -2 -1 0 1 2at 503.666 kb on + strand, within Ac3H11_2269at 503.666 kb on + strand, within Ac3H11_2269at 504.041 kb on + strand, within Ac3H11_2269at 504.042 kb on - strand, within Ac3H11_2269at 504.042 kb on - strand, within Ac3H11_2269at 504.042 kb on - strand, within Ac3H11_2269at 504.172 kb on + strand, within Ac3H11_2269at 504.173 kb on - strand, within Ac3H11_2269at 504.259 kb on - strand, within Ac3H11_2269at 504.259 kb on - strand, within Ac3H11_2269at 504.259 kb on - strand, within Ac3H11_2269at 504.259 kb on - strand, within Ac3H11_2269at 504.497 kb on + strandat 504.497 kb on + strandat 504.498 kb on - strandat 504.498 kb on - strandat 504.498 kb on - strandat 504.498 kb on - strandat 504.498 kb on - strandat 504.527 kb on + strandat 504.527 kb on + strandat 504.528 kb on - strandat 504.528 kb on - strandat 504.528 kb on - strandat 504.609 kb on - strandat 504.616 kb on + strandat 504.702 kb on + strandat 504.702 kb on + strandat 504.703 kb on - strandat 504.703 kb on - strandat 504.703 kb on - strandat 504.810 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.931 kb on - strand, within Ac3H11_2270at 504.931 kb on - strand, within Ac3H11_2270at 504.931 kb on - strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.162 kb on - strand, within Ac3H11_2270at 505.162 kb on - strand, within Ac3H11_2270at 505.162 kb on - strand, within Ac3H11_2270at 505.162 kb on - strand, within Ac3H11_2270at 505.391 kb on + strand, within Ac3H11_2270at 505.437 kb on + strand, within Ac3H11_2270at 505.437 kb on + strand, within Ac3H11_2270at 505.437 kb on + strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.536 kb on + strand, within Ac3H11_2270at 505.536 kb on + strand, within Ac3H11_2270at 505.536 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.564 kb on - strand, within Ac3H11_2270at 505.564 kb on - strand, within Ac3H11_2270at 505.564 kb on - strand, within Ac3H11_2270at 505.564 kb on - strand, within Ac3H11_2270at 505.564 kb on - strand, within Ac3H11_2270at 506.527 kb on - strand, within Ac3H11_2271at 506.586 kb on + strand, within Ac3H11_2271at 506.586 kb on + strand, within Ac3H11_2271at 506.586 kb on + strand, within Ac3H11_2271at 506.586 kb on + strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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503,666 + Ac3H11_2269 0.69 +1.1
503,666 + Ac3H11_2269 0.69 +1.1
504,041 + Ac3H11_2269 0.81 -0.7
504,042 - Ac3H11_2269 0.81 +1.2
504,042 - Ac3H11_2269 0.81 +0.3
504,042 - Ac3H11_2269 0.81 +1.4
504,172 + Ac3H11_2269 0.86 +2.5
504,173 - Ac3H11_2269 0.86 +0.1
504,259 - Ac3H11_2269 0.88 +1.2
504,259 - Ac3H11_2269 0.88 +0.8
504,259 - Ac3H11_2269 0.88 +1.5
504,259 - Ac3H11_2269 0.88 -1.1
504,497 + +2.0
504,497 + +0.1
504,498 - +0.4
504,498 - -0.5
504,498 - +0.7
504,498 - -0.8
504,498 - +0.3
504,527 + +1.5
504,527 + +2.1
504,528 - -0.6
504,528 - -0.1
504,528 - +1.8
504,609 - -2.3
504,616 + +0.4
504,702 + +0.1
504,702 + -0.3
504,703 - -1.2
504,703 - +1.0
504,703 - +0.6
504,810 + Ac3H11_2270 0.18 -1.7
504,930 + Ac3H11_2270 0.28 +0.1
504,930 + Ac3H11_2270 0.28 +0.1
504,930 + Ac3H11_2270 0.28 -0.5
504,930 + Ac3H11_2270 0.28 -1.5
504,930 + Ac3H11_2270 0.28 +0.6
504,930 + Ac3H11_2270 0.28 -0.2
504,930 + Ac3H11_2270 0.28 -1.0
504,930 + Ac3H11_2270 0.28 +0.8
504,931 - Ac3H11_2270 0.28 +0.6
504,931 - Ac3H11_2270 0.28 +0.5
504,931 - Ac3H11_2270 0.28 +0.0
505,161 + Ac3H11_2270 0.48 +1.1
505,161 + Ac3H11_2270 0.48 -1.0
505,161 + Ac3H11_2270 0.48 +0.5
505,161 + Ac3H11_2270 0.48 -1.4
505,161 + Ac3H11_2270 0.48 +0.3
505,161 + Ac3H11_2270 0.48 -1.5
505,162 - Ac3H11_2270 0.48 +0.5
505,162 - Ac3H11_2270 0.48 -2.4
505,162 - Ac3H11_2270 0.48 -0.3
505,162 - Ac3H11_2270 0.48 -0.2
505,391 + Ac3H11_2270 0.67 -1.0
505,437 + Ac3H11_2270 0.71 +0.5
505,437 + Ac3H11_2270 0.71 -1.4
505,437 + Ac3H11_2270 0.71 +1.4
505,438 - Ac3H11_2270 0.71 -0.6
505,438 - Ac3H11_2270 0.71 -0.2
505,438 - Ac3H11_2270 0.71 +0.1
505,438 - Ac3H11_2270 0.71 +0.5
505,438 - Ac3H11_2270 0.71 -1.3
505,438 - Ac3H11_2270 0.71 -1.0
505,438 - Ac3H11_2270 0.71 -0.3
505,536 + Ac3H11_2270 0.80 -0.3
505,536 + Ac3H11_2270 0.80 +0.1
505,536 + Ac3H11_2270 0.80 +0.1
505,563 + Ac3H11_2270 0.82 -0.5
505,563 + Ac3H11_2270 0.82 -0.5
505,563 + Ac3H11_2270 0.82 -0.3
505,563 + Ac3H11_2270 0.82 -0.3
505,563 + Ac3H11_2270 0.82 -0.7
505,563 + Ac3H11_2270 0.82 -0.3
505,563 + Ac3H11_2270 0.82 +0.5
505,564 - Ac3H11_2270 0.82 -0.1
505,564 - Ac3H11_2270 0.82 +0.5
505,564 - Ac3H11_2270 0.82 -1.8
505,564 - Ac3H11_2270 0.82 -0.5
505,564 - Ac3H11_2270 0.82 -0.0
506,527 - Ac3H11_2271 0.80 +1.0
506,586 + Ac3H11_2271 0.86 -1.0
506,586 + Ac3H11_2271 0.86 -1.9
506,586 + Ac3H11_2271 0.86 -0.8
506,586 + Ac3H11_2271 0.86 -0.8
506,587 - Ac3H11_2271 0.86 -0.2
506,587 - Ac3H11_2271 0.86 -2.5
506,587 - Ac3H11_2271 0.86 +1.1
506,587 - Ac3H11_2271 0.86 +0.1
506,587 - Ac3H11_2271 0.86 -0.4
506,587 - Ac3H11_2271 0.86 +1.0
506,587 - Ac3H11_2271 0.86 +0.9
506,587 - Ac3H11_2271 0.86 -0.0
506,587 - Ac3H11_2271 0.86 +0.1
506,587 - Ac3H11_2271 0.86 +0.4
506,690 - +0.8

Or see this region's nucleotide sequence