Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1939 and Ac3H11_1940 are separated by 192 nucleotides Ac3H11_1940 and Ac3H11_1941 are separated by 108 nucleotides Ac3H11_1941 and Ac3H11_1942 are separated by 181 nucleotides
Ac3H11_1939 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 154,954 to 155,829
_1939
Ac3H11_1940 - Enoyl-CoA hydratase (EC 4.2.1.17), at 156,022 to 156,819
_1940
Ac3H11_1941 - putative protein PaaI, possibly involved in aromatic compounds catabolism, at 156,928 to 157,413
_1941
Ac3H11_1942 - Phenylacetic acid degradation protein paaI, at 157,595 to 158,053
_1942
Position (kb)
156
157 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 155.027 kb on + strand at 155.027 kb on + strand at 155.028 kb on - strand at 155.028 kb on - strand at 155.028 kb on - strand at 155.028 kb on - strand at 155.060 kb on + strand, within Ac3H11_1939 at 155.061 kb on - strand, within Ac3H11_1939 at 155.288 kb on + strand, within Ac3H11_1939 at 155.288 kb on + strand, within Ac3H11_1939 at 155.288 kb on + strand, within Ac3H11_1939 at 155.288 kb on + strand, within Ac3H11_1939 at 155.288 kb on + strand, within Ac3H11_1939 at 155.288 kb on + strand, within Ac3H11_1939 at 155.288 kb on + strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.289 kb on - strand, within Ac3H11_1939 at 155.292 kb on - strand, within Ac3H11_1939 at 155.292 kb on - strand, within Ac3H11_1939 at 155.292 kb on - strand, within Ac3H11_1939 at 155.345 kb on + strand, within Ac3H11_1939 at 155.453 kb on + strand, within Ac3H11_1939 at 155.469 kb on + strand, within Ac3H11_1939 at 155.469 kb on + strand, within Ac3H11_1939 at 155.470 kb on - strand, within Ac3H11_1939 at 155.470 kb on - strand, within Ac3H11_1939 at 155.470 kb on - strand, within Ac3H11_1939 at 155.470 kb on - strand, within Ac3H11_1939 at 155.522 kb on + strand, within Ac3H11_1939 at 155.747 kb on + strand at 155.747 kb on + strand at 155.748 kb on - strand at 155.780 kb on + strand at 155.781 kb on - strand at 155.781 kb on - strand at 155.781 kb on - strand at 155.781 kb on - strand at 155.871 kb on + strand at 155.876 kb on - strand at 155.876 kb on - strand at 155.914 kb on - strand at 155.978 kb on - strand at 155.984 kb on + strand at 155.984 kb on + strand at 155.984 kb on + strand at 155.985 kb on - strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.999 kb on + strand at 155.999 kb on + strand at 156.000 kb on - strand at 156.029 kb on + strand at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.431 kb on - strand, within Ac3H11_1940 at 156.858 kb on + strand at 156.863 kb on - strand at 157.105 kb on + strand, within Ac3H11_1941 at 157.105 kb on + strand, within Ac3H11_1941 at 157.112 kb on - strand, within Ac3H11_1941 at 157.267 kb on + strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.399 kb on + strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.418 kb on + strand at 157.419 kb on - strand at 157.487 kb on + strand at 157.487 kb on + strand at 157.488 kb on - strand at 157.496 kb on + strand at 157.496 kb on + strand at 157.496 kb on + strand at 157.497 kb on - strand at 157.497 kb on - strand at 157.497 kb on - strand at 157.497 kb on - strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.501 kb on - strand at 157.501 kb on - strand at 157.506 kb on + strand at 157.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 155,027 + +1.2 155,027 + -0.3 155,028 - -0.0 155,028 - -0.4 155,028 - -0.8 155,028 - +1.1 155,060 + Ac3H11_1939 0.12 -0.0 155,061 - Ac3H11_1939 0.12 -0.9 155,288 + Ac3H11_1939 0.38 +0.4 155,288 + Ac3H11_1939 0.38 -0.2 155,288 + Ac3H11_1939 0.38 -0.6 155,288 + Ac3H11_1939 0.38 -0.1 155,288 + Ac3H11_1939 0.38 -1.7 155,288 + Ac3H11_1939 0.38 -0.2 155,288 + Ac3H11_1939 0.38 -0.1 155,289 - Ac3H11_1939 0.38 -0.3 155,289 - Ac3H11_1939 0.38 +0.3 155,289 - Ac3H11_1939 0.38 -0.8 155,289 - Ac3H11_1939 0.38 +0.2 155,289 - Ac3H11_1939 0.38 -0.4 155,289 - Ac3H11_1939 0.38 +1.0 155,289 - Ac3H11_1939 0.38 -1.6 155,289 - Ac3H11_1939 0.38 -0.3 155,289 - Ac3H11_1939 0.38 -0.5 155,289 - Ac3H11_1939 0.38 +0.1 155,289 - Ac3H11_1939 0.38 +0.5 155,292 - Ac3H11_1939 0.39 +3.3 155,292 - Ac3H11_1939 0.39 +0.1 155,292 - Ac3H11_1939 0.39 -0.2 155,345 + Ac3H11_1939 0.45 -0.1 155,453 + Ac3H11_1939 0.57 +0.1 155,469 + Ac3H11_1939 0.59 +0.4 155,469 + Ac3H11_1939 0.59 +0.6 155,470 - Ac3H11_1939 0.59 -0.6 155,470 - Ac3H11_1939 0.59 +0.0 155,470 - Ac3H11_1939 0.59 +0.6 155,470 - Ac3H11_1939 0.59 +0.1 155,522 + Ac3H11_1939 0.65 +0.6 155,747 + -0.4 155,747 + +0.0 155,748 - +0.7 155,780 + -0.4 155,781 - -0.3 155,781 - +0.3 155,781 - -0.3 155,781 - -1.6 155,871 + +0.8 155,876 - +0.2 155,876 - -0.3 155,914 - +0.5 155,978 - +0.6 155,984 + -0.6 155,984 + +0.9 155,984 + -0.2 155,985 - +0.2 155,997 + +1.0 155,997 + +0.4 155,997 + +1.1 155,997 + +0.4 155,997 + -1.1 155,997 + +1.1 155,997 + -1.0 155,997 + +0.3 155,997 + +0.3 155,998 - -0.2 155,998 - +0.3 155,998 - +0.1 155,998 - +1.8 155,998 - -0.5 155,999 + +0.1 155,999 + +0.6 156,000 - +1.0 156,029 + -0.2 156,430 + Ac3H11_1940 0.51 +0.8 156,430 + Ac3H11_1940 0.51 -1.1 156,430 + Ac3H11_1940 0.51 +0.7 156,430 + Ac3H11_1940 0.51 +0.1 156,430 + Ac3H11_1940 0.51 -0.3 156,430 + Ac3H11_1940 0.51 -1.2 156,431 - Ac3H11_1940 0.51 +0.9 156,858 + -1.6 156,863 - +0.2 157,105 + Ac3H11_1941 0.36 -0.9 157,105 + Ac3H11_1941 0.36 +0.1 157,112 - Ac3H11_1941 0.38 +0.2 157,267 + Ac3H11_1941 0.70 -1.0 157,268 - Ac3H11_1941 0.70 -0.7 157,268 - Ac3H11_1941 0.70 +0.6 157,268 - Ac3H11_1941 0.70 -0.9 157,268 - Ac3H11_1941 0.70 +0.8 157,399 + +1.1 157,399 + -2.5 157,399 + +1.2 157,399 + -0.0 157,400 - +0.9 157,400 - +0.6 157,400 - +0.2 157,400 - -0.4 157,418 + -0.2 157,419 - -0.4 157,487 + -0.1 157,487 + +0.0 157,488 - -0.0 157,496 + -0.2 157,496 + +0.2 157,496 + -0.8 157,497 - -0.8 157,497 - -2.0 157,497 - +0.2 157,497 - +0.2 157,500 + +1.1 157,500 + +1.4 157,500 + +0.3 157,500 + +1.4 157,500 + +1.5 157,500 + +1.1 157,500 + +1.1 157,501 - +0.4 157,501 - +0.4 157,506 + -0.2 157,507 - +0.4
Or see this region's nucleotide sequence