Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1850

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1849 and Ac3H11_1850 are separated by 146 nucleotidesAc3H11_1850 and Ac3H11_1851 are separated by 3 nucleotides Ac3H11_1849 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data), at 52,566 to 53,711 _1849 Ac3H11_1850 - Lipase chaperone, at 53,858 to 54,853 _1850 Ac3H11_1851 - Lipase precursor (EC 3.1.1.3), at 54,857 to 55,798 _1851 Position (kb) 53 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 53.056 kb on + strand, within Ac3H11_1849at 53.057 kb on - strand, within Ac3H11_1849at 53.110 kb on + strand, within Ac3H11_1849at 53.110 kb on + strand, within Ac3H11_1849at 53.110 kb on + strand, within Ac3H11_1849at 53.111 kb on - strand, within Ac3H11_1849at 53.111 kb on - strand, within Ac3H11_1849at 53.143 kb on + strand, within Ac3H11_1849at 53.144 kb on - strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.233 kb on + strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.234 kb on - strand, within Ac3H11_1849at 53.269 kb on + strand, within Ac3H11_1849at 53.269 kb on + strand, within Ac3H11_1849at 53.269 kb on + strand, within Ac3H11_1849at 53.270 kb on - strand, within Ac3H11_1849at 53.270 kb on - strand, within Ac3H11_1849at 53.270 kb on - strand, within Ac3H11_1849at 53.270 kb on - strand, within Ac3H11_1849at 53.371 kb on + strand, within Ac3H11_1849at 53.371 kb on + strand, within Ac3H11_1849at 53.372 kb on - strand, within Ac3H11_1849at 53.372 kb on - strand, within Ac3H11_1849at 53.440 kb on + strand, within Ac3H11_1849at 53.440 kb on + strand, within Ac3H11_1849at 53.441 kb on - strand, within Ac3H11_1849at 53.497 kb on + strand, within Ac3H11_1849at 53.497 kb on + strand, within Ac3H11_1849at 53.718 kb on + strandat 53.718 kb on + strandat 53.718 kb on + strandat 53.718 kb on + strandat 53.833 kb on - strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.844 kb on + strandat 53.845 kb on - strandat 53.845 kb on - strandat 53.845 kb on - strandat 54.000 kb on + strand, within Ac3H11_1850at 54.000 kb on + strand, within Ac3H11_1850at 54.000 kb on + strand, within Ac3H11_1850at 54.000 kb on + strand, within Ac3H11_1850at 54.001 kb on - strand, within Ac3H11_1850at 54.001 kb on - strand, within Ac3H11_1850at 54.076 kb on - strand, within Ac3H11_1850at 54.105 kb on + strand, within Ac3H11_1850at 54.105 kb on + strand, within Ac3H11_1850at 54.106 kb on - strand, within Ac3H11_1850at 54.106 kb on - strand, within Ac3H11_1850at 54.106 kb on - strand, within Ac3H11_1850at 54.288 kb on + strandat 54.289 kb on - strand, within Ac3H11_1850at 54.327 kb on + strand, within Ac3H11_1850at 54.327 kb on + strand, within Ac3H11_1850at 54.328 kb on - strand, within Ac3H11_1850at 54.328 kb on - strand, within Ac3H11_1850at 54.328 kb on - strand, within Ac3H11_1850at 54.328 kb on - strand, within Ac3H11_1850at 54.342 kb on - strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.453 kb on + strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.454 kb on - strand, within Ac3H11_1850at 54.858 kb on + strandat 54.858 kb on + strandat 54.859 kb on - strandat 54.859 kb on - strandat 54.859 kb on - strandat 55.055 kb on + strand, within Ac3H11_1851at 55.055 kb on + strand, within Ac3H11_1851at 55.056 kb on - strand, within Ac3H11_1851at 55.056 kb on - strand, within Ac3H11_1851at 55.056 kb on - strand, within Ac3H11_1851at 55.056 kb on - strand, within Ac3H11_1851at 55.119 kb on + strand, within Ac3H11_1851at 55.119 kb on + strand, within Ac3H11_1851at 55.119 kb on + strand, within Ac3H11_1851at 55.119 kb on + strand, within Ac3H11_1851at 55.119 kb on + strand, within Ac3H11_1851at 55.119 kb on + strand, within Ac3H11_1851at 55.119 kb on + strand, within Ac3H11_1851at 55.119 kb on + strand, within Ac3H11_1851at 55.119 kb on + strand, within Ac3H11_1851at 55.120 kb on - strand, within Ac3H11_1851at 55.120 kb on - strand, within Ac3H11_1851at 55.120 kb on - strand, within Ac3H11_1851at 55.120 kb on - strand, within Ac3H11_1851at 55.120 kb on - strand, within Ac3H11_1851at 55.120 kb on - strand, within Ac3H11_1851at 55.122 kb on + strand, within Ac3H11_1851at 55.122 kb on + strand, within Ac3H11_1851at 55.122 kb on + strand, within Ac3H11_1851at 55.122 kb on + strand, within Ac3H11_1851at 55.122 kb on + strand, within Ac3H11_1851at 55.122 kb on + strand, within Ac3H11_1851at 55.122 kb on + strand, within Ac3H11_1851at 55.123 kb on - strand, within Ac3H11_1851at 55.123 kb on - strand, within Ac3H11_1851at 55.123 kb on - strand, within Ac3H11_1851at 55.440 kb on + strand, within Ac3H11_1851at 55.440 kb on + strand, within Ac3H11_1851at 55.440 kb on + strand, within Ac3H11_1851at 55.440 kb on + strand, within Ac3H11_1851at 55.440 kb on + strand, within Ac3H11_1851at 55.440 kb on + strand, within Ac3H11_1851at 55.440 kb on + strand, within Ac3H11_1851at 55.441 kb on - strand, within Ac3H11_1851at 55.581 kb on + strand, within Ac3H11_1851at 55.581 kb on + strand, within Ac3H11_1851at 55.581 kb on + strand, within Ac3H11_1851at 55.581 kb on + strand, within Ac3H11_1851at 55.581 kb on + strand, within Ac3H11_1851at 55.581 kb on + strand, within Ac3H11_1851at 55.581 kb on + strand, within Ac3H11_1851at 55.581 kb on + strandat 55.582 kb on - strand, within Ac3H11_1851at 55.582 kb on - strand, within Ac3H11_1851at 55.582 kb on - strand, within Ac3H11_1851at 55.582 kb on - strand, within Ac3H11_1851at 55.582 kb on - strand, within Ac3H11_1851at 55.582 kb on - strand, within Ac3H11_1851at 55.582 kb on - strand, within Ac3H11_1851at 55.582 kb on - strand, within Ac3H11_1851at 55.582 kb on - strand, within Ac3H11_1851at 55.623 kb on + strand, within Ac3H11_1851at 55.623 kb on + strand, within Ac3H11_1851at 55.623 kb on + strand, within Ac3H11_1851at 55.623 kb on + strand, within Ac3H11_1851at 55.624 kb on - strand, within Ac3H11_1851at 55.624 kb on - strand, within Ac3H11_1851at 55.624 kb on - strand, within Ac3H11_1851at 55.629 kb on + strand, within Ac3H11_1851at 55.629 kb on + strand, within Ac3H11_1851at 55.629 kb on + strand, within Ac3H11_1851at 55.629 kb on + strand, within Ac3H11_1851at 55.630 kb on - strand, within Ac3H11_1851at 55.630 kb on - strand, within Ac3H11_1851at 55.630 kb on - strand, within Ac3H11_1851at 55.630 kb on - strand, within Ac3H11_1851at 55.701 kb on + strand, within Ac3H11_1851at 55.701 kb on + strand, within Ac3H11_1851at 55.701 kb on + strand, within Ac3H11_1851at 55.702 kb on - strand, within Ac3H11_1851at 55.826 kb on + strandat 55.826 kb on + strandat 55.826 kb on + strandat 55.826 kb on + strandat 55.826 kb on + strandat 55.826 kb on + strandat 55.826 kb on + strandat 55.826 kb on + strandat 55.826 kb on + strandat 55.826 kb on + strandat 55.827 kb on - strandat 55.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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53,056 + Ac3H11_1849 0.43 -1.0
53,057 - Ac3H11_1849 0.43 +0.1
53,110 + Ac3H11_1849 0.47 -0.2
53,110 + Ac3H11_1849 0.47 +1.7
53,110 + Ac3H11_1849 0.47 +0.1
53,111 - Ac3H11_1849 0.48 +0.8
53,111 - Ac3H11_1849 0.48 -0.7
53,143 + Ac3H11_1849 0.50 -0.5
53,144 - Ac3H11_1849 0.50 -1.0
53,233 + Ac3H11_1849 0.58 -0.4
53,233 + Ac3H11_1849 0.58 -0.2
53,233 + Ac3H11_1849 0.58 +0.8
53,233 + Ac3H11_1849 0.58 -0.4
53,233 + Ac3H11_1849 0.58 -1.0
53,233 + Ac3H11_1849 0.58 -0.9
53,234 - Ac3H11_1849 0.58 -0.7
53,234 - Ac3H11_1849 0.58 +1.4
53,234 - Ac3H11_1849 0.58 +0.3
53,234 - Ac3H11_1849 0.58 +0.5
53,234 - Ac3H11_1849 0.58 -0.4
53,234 - Ac3H11_1849 0.58 -0.9
53,234 - Ac3H11_1849 0.58 +0.2
53,269 + Ac3H11_1849 0.61 +0.0
53,269 + Ac3H11_1849 0.61 +0.0
53,269 + Ac3H11_1849 0.61 -0.7
53,270 - Ac3H11_1849 0.61 -1.4
53,270 - Ac3H11_1849 0.61 -0.5
53,270 - Ac3H11_1849 0.61 -0.1
53,270 - Ac3H11_1849 0.61 -0.9
53,371 + Ac3H11_1849 0.70 -1.0
53,371 + Ac3H11_1849 0.70 -0.2
53,372 - Ac3H11_1849 0.70 -1.0
53,372 - Ac3H11_1849 0.70 -2.6
53,440 + Ac3H11_1849 0.76 +0.2
53,440 + Ac3H11_1849 0.76 +0.5
53,441 - Ac3H11_1849 0.76 -0.6
53,497 + Ac3H11_1849 0.81 +1.6
53,497 + Ac3H11_1849 0.81 +0.1
53,718 + -0.6
53,718 + -1.2
53,718 + +0.9
53,718 + -1.7
53,833 - -2.8
53,844 + -1.7
53,844 + -1.7
53,844 + +0.7
53,844 + -1.0
53,844 + +0.4
53,844 + -0.5
53,844 + -0.9
53,845 - -1.1
53,845 - -0.4
53,845 - +0.4
54,000 + Ac3H11_1850 0.14 +1.1
54,000 + Ac3H11_1850 0.14 -0.2
54,000 + Ac3H11_1850 0.14 -0.4
54,000 + Ac3H11_1850 0.14 +0.2
54,001 - Ac3H11_1850 0.14 -0.3
54,001 - Ac3H11_1850 0.14 -0.2
54,076 - Ac3H11_1850 0.22 -0.1
54,105 + Ac3H11_1850 0.25 -0.6
54,105 + Ac3H11_1850 0.25 +0.6
54,106 - Ac3H11_1850 0.25 -1.1
54,106 - Ac3H11_1850 0.25 +0.2
54,106 - Ac3H11_1850 0.25 +0.1
54,288 + +0.4
54,289 - Ac3H11_1850 0.43 +0.7
54,327 + Ac3H11_1850 0.47 -1.0
54,327 + Ac3H11_1850 0.47 +0.4
54,328 - Ac3H11_1850 0.47 +1.0
54,328 - Ac3H11_1850 0.47 -0.3
54,328 - Ac3H11_1850 0.47 +1.6
54,328 - Ac3H11_1850 0.47 -1.2
54,342 - Ac3H11_1850 0.49 +1.5
54,453 + Ac3H11_1850 0.60 +0.0
54,453 + Ac3H11_1850 0.60 +0.5
54,453 + Ac3H11_1850 0.60 +1.3
54,453 + Ac3H11_1850 0.60 -0.2
54,453 + Ac3H11_1850 0.60 +0.8
54,453 + Ac3H11_1850 0.60 +1.0
54,453 + Ac3H11_1850 0.60 +0.5
54,454 - Ac3H11_1850 0.60 +0.2
54,454 - Ac3H11_1850 0.60 +0.7
54,454 - Ac3H11_1850 0.60 +1.5
54,454 - Ac3H11_1850 0.60 +1.5
54,454 - Ac3H11_1850 0.60 -0.6
54,454 - Ac3H11_1850 0.60 -0.7
54,454 - Ac3H11_1850 0.60 -0.4
54,858 + -0.4
54,858 + -0.3
54,859 - +0.2
54,859 - -1.7
54,859 - -0.6
55,055 + Ac3H11_1851 0.21 -2.8
55,055 + Ac3H11_1851 0.21 +1.3
55,056 - Ac3H11_1851 0.21 +1.6
55,056 - Ac3H11_1851 0.21 -0.7
55,056 - Ac3H11_1851 0.21 -1.4
55,056 - Ac3H11_1851 0.21 -0.3
55,119 + Ac3H11_1851 0.28 -0.3
55,119 + Ac3H11_1851 0.28 -0.6
55,119 + Ac3H11_1851 0.28 -0.5
55,119 + Ac3H11_1851 0.28 -0.7
55,119 + Ac3H11_1851 0.28 -1.2
55,119 + Ac3H11_1851 0.28 -0.6
55,119 + Ac3H11_1851 0.28 +0.1
55,119 + Ac3H11_1851 0.28 +1.3
55,119 + Ac3H11_1851 0.28 -0.8
55,120 - Ac3H11_1851 0.28 -0.0
55,120 - Ac3H11_1851 0.28 +0.4
55,120 - Ac3H11_1851 0.28 -0.5
55,120 - Ac3H11_1851 0.28 +0.4
55,120 - Ac3H11_1851 0.28 +0.4
55,120 - Ac3H11_1851 0.28 -0.0
55,122 + Ac3H11_1851 0.28 -1.2
55,122 + Ac3H11_1851 0.28 +1.2
55,122 + Ac3H11_1851 0.28 +0.4
55,122 + Ac3H11_1851 0.28 +0.4
55,122 + Ac3H11_1851 0.28 +0.2
55,122 + Ac3H11_1851 0.28 +0.7
55,122 + Ac3H11_1851 0.28 -1.7
55,123 - Ac3H11_1851 0.28 -1.4
55,123 - Ac3H11_1851 0.28 +0.1
55,123 - Ac3H11_1851 0.28 -0.6
55,440 + Ac3H11_1851 0.62 -0.4
55,440 + Ac3H11_1851 0.62 +0.7
55,440 + Ac3H11_1851 0.62 +0.6
55,440 + Ac3H11_1851 0.62 -1.2
55,440 + Ac3H11_1851 0.62 +0.6
55,440 + Ac3H11_1851 0.62 -0.5
55,440 + Ac3H11_1851 0.62 -0.0
55,441 - Ac3H11_1851 0.62 -0.5
55,581 + Ac3H11_1851 0.77 -0.3
55,581 + Ac3H11_1851 0.77 -0.0
55,581 + Ac3H11_1851 0.77 -0.2
55,581 + Ac3H11_1851 0.77 -0.6
55,581 + Ac3H11_1851 0.77 -0.1
55,581 + Ac3H11_1851 0.77 -0.3
55,581 + Ac3H11_1851 0.77 -0.5
55,581 + +0.4
55,582 - Ac3H11_1851 0.77 +1.1
55,582 - Ac3H11_1851 0.77 -0.3
55,582 - Ac3H11_1851 0.77 -0.1
55,582 - Ac3H11_1851 0.77 +0.4
55,582 - Ac3H11_1851 0.77 +0.5
55,582 - Ac3H11_1851 0.77 +1.6
55,582 - Ac3H11_1851 0.77 +0.1
55,582 - Ac3H11_1851 0.77 -0.3
55,582 - Ac3H11_1851 0.77 +0.5
55,623 + Ac3H11_1851 0.81 +0.9
55,623 + Ac3H11_1851 0.81 -0.7
55,623 + Ac3H11_1851 0.81 +1.0
55,623 + Ac3H11_1851 0.81 -2.3
55,624 - Ac3H11_1851 0.81 -0.2
55,624 - Ac3H11_1851 0.81 -0.2
55,624 - Ac3H11_1851 0.81 -0.1
55,629 + Ac3H11_1851 0.82 +0.1
55,629 + Ac3H11_1851 0.82 +0.3
55,629 + Ac3H11_1851 0.82 +0.4
55,629 + Ac3H11_1851 0.82 -0.1
55,630 - Ac3H11_1851 0.82 +0.5
55,630 - Ac3H11_1851 0.82 -0.1
55,630 - Ac3H11_1851 0.82 +3.4
55,630 - Ac3H11_1851 0.82 -0.0
55,701 + Ac3H11_1851 0.90 +0.3
55,701 + Ac3H11_1851 0.90 -0.3
55,701 + Ac3H11_1851 0.90 -0.6
55,702 - Ac3H11_1851 0.90 +0.7
55,826 + -0.6
55,826 + -1.9
55,826 + -0.6
55,826 + -0.2
55,826 + -0.2
55,826 + -1.0
55,826 + +0.3
55,826 + -0.6
55,826 + -0.9
55,826 + -1.2
55,827 - +0.3
55,827 - -1.2

Or see this region's nucleotide sequence