Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_177

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_175 and Ac3H11_176 are separated by 86 nucleotidesAc3H11_176 and Ac3H11_177 are separated by 9 nucleotidesAc3H11_177 and Ac3H11_178 are separated by 91 nucleotides Ac3H11_175 - Permease of the drug/metabolite transporter (DMT) superfamily, at 63,855 to 64,748 _175 Ac3H11_176 - Transcriptional regulator, MarR family, at 64,835 to 65,380 _176 Ac3H11_177 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 65,390 to 66,163 _177 Ac3H11_178 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 66,255 to 67,439 _178 Position (kb) 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 64.672 kb on + strandat 64.672 kb on + strandat 64.672 kb on + strandat 64.672 kb on + strandat 64.672 kb on + strandat 64.672 kb on + strandat 64.673 kb on - strandat 64.788 kb on + strandat 64.788 kb on + strandat 64.789 kb on - strandat 64.789 kb on - strandat 65.052 kb on - strand, within Ac3H11_176at 65.368 kb on + strandat 65.369 kb on - strandat 65.378 kb on + strandat 65.379 kb on - strandat 65.398 kb on + strandat 65.398 kb on + strandat 65.398 kb on + strandat 65.399 kb on - strandat 65.399 kb on - strandat 65.399 kb on - strandat 65.399 kb on - strandat 65.408 kb on + strandat 65.408 kb on + strandat 65.408 kb on + strandat 65.408 kb on + strandat 65.408 kb on + strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.871 kb on - strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 66.168 kb on - strandat 66.170 kb on + strandat 66.188 kb on + strandat 66.189 kb on - strandat 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.837 kb on + strand, within Ac3H11_178at 66.838 kb on - strand, within Ac3H11_178at 66.894 kb on + strand, within Ac3H11_178at 66.894 kb on + strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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64,672 + -1.8
64,672 + -1.0
64,672 + +0.7
64,672 + -0.5
64,672 + +0.2
64,672 + +0.4
64,673 - -0.1
64,788 + +0.7
64,788 + +1.7
64,789 - -0.2
64,789 - +0.0
65,052 - Ac3H11_176 0.40 -0.6
65,368 + +0.1
65,369 - +0.2
65,378 + -1.6
65,379 - +0.4
65,398 + +0.3
65,398 + +1.8
65,398 + +2.1
65,399 - -0.3
65,399 - +0.7
65,399 - -0.1
65,399 - -0.7
65,408 + +0.2
65,408 + +0.1
65,408 + -0.2
65,408 + +0.4
65,408 + +0.3
65,409 - -1.0
65,409 - -1.9
65,409 - -0.9
65,409 - -0.3
65,409 - +0.2
65,409 - -0.3
65,409 - -0.2
65,871 - Ac3H11_177 0.62 -0.8
65,952 + Ac3H11_177 0.73 -0.9
65,952 + Ac3H11_177 0.73 +0.1
65,952 + Ac3H11_177 0.73 -1.3
65,952 + Ac3H11_177 0.73 -0.8
65,952 + Ac3H11_177 0.73 +0.9
65,952 + Ac3H11_177 0.73 -0.5
65,953 - Ac3H11_177 0.73 +0.3
65,953 - Ac3H11_177 0.73 -1.5
65,953 - Ac3H11_177 0.73 +0.5
65,953 - Ac3H11_177 0.73 -0.1
65,953 - Ac3H11_177 0.73 +0.5
65,953 - Ac3H11_177 0.73 +0.2
66,168 - +0.1
66,170 + -0.4
66,188 + +0.2
66,189 - +0.4
66,450 + Ac3H11_178 0.16 -0.5
66,450 + Ac3H11_178 0.16 -1.7
66,450 + Ac3H11_178 0.16 +0.2
66,450 + Ac3H11_178 0.16 -0.4
66,450 + Ac3H11_178 0.16 -0.7
66,450 + Ac3H11_178 0.16 -0.4
66,450 + Ac3H11_178 0.16 +0.1
66,450 + Ac3H11_178 0.16 +1.4
66,450 + Ac3H11_178 0.16 -0.8
66,450 + Ac3H11_178 0.16 +0.3
66,450 + Ac3H11_178 0.16 +1.2
66,450 + Ac3H11_178 0.16 -0.5
66,451 - Ac3H11_178 0.17 -0.9
66,451 - Ac3H11_178 0.17 -1.5
66,451 - Ac3H11_178 0.17 +1.4
66,451 - Ac3H11_178 0.17 +1.6
66,451 - Ac3H11_178 0.17 +0.2
66,451 - Ac3H11_178 0.17 +0.2
66,451 - Ac3H11_178 0.17 +1.5
66,451 - Ac3H11_178 0.17 -0.8
66,451 - Ac3H11_178 0.17 -0.4
66,451 - Ac3H11_178 0.17 +0.2
66,451 - Ac3H11_178 0.17 -0.8
66,451 - Ac3H11_178 0.17 -1.0
66,451 - Ac3H11_178 0.17 +0.0
66,451 - Ac3H11_178 0.17 +0.7
66,451 - Ac3H11_178 0.17 -0.1
66,837 + Ac3H11_178 0.49 -0.1
66,838 - Ac3H11_178 0.49 +0.8
66,894 + Ac3H11_178 0.54 +0.0
66,894 + Ac3H11_178 0.54 -0.2
66,895 - Ac3H11_178 0.54 -1.6
66,895 - Ac3H11_178 0.54 -0.5
66,895 - Ac3H11_178 0.54 +0.2
66,895 - Ac3H11_178 0.54 +1.4
67,119 + Ac3H11_178 0.73 +1.5
67,119 + Ac3H11_178 0.73 +0.3
67,119 + Ac3H11_178 0.73 +2.6
67,119 + Ac3H11_178 0.73 +2.5
67,119 + Ac3H11_178 0.73 +0.1
67,119 + Ac3H11_178 0.73 +0.3
67,119 + Ac3H11_178 0.73 +0.0
67,120 - Ac3H11_178 0.73 +1.1
67,120 - Ac3H11_178 0.73 +0.6
67,120 - Ac3H11_178 0.73 +1.6
67,120 - Ac3H11_178 0.73 +0.5

Or see this region's nucleotide sequence