Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1221

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1220 and Ac3H11_1221 are separated by 20 nucleotidesAc3H11_1221 and Ac3H11_1222 are separated by 14 nucleotidesAc3H11_1222 and Ac3H11_1223 are separated by 6 nucleotides Ac3H11_1220 - FIG097052: Sugar transporter, at 38,965 to 40,248 _1220 Ac3H11_1221 - FIG002577: Putative lipoprotein precursor, at 40,269 to 40,808 _1221 Ac3H11_1222 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 40,823 to 41,587 _1222 Ac3H11_1223 - FIG002994: Putative transcriptional regulator, at 41,594 to 42,049 _1223 Position (kb) 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 39.276 kb on - strand, within Ac3H11_1220at 39.328 kb on + strand, within Ac3H11_1220at 39.337 kb on + strand, within Ac3H11_1220at 39.338 kb on - strand, within Ac3H11_1220at 39.450 kb on - strand, within Ac3H11_1220at 39.532 kb on + strand, within Ac3H11_1220at 39.757 kb on + strand, within Ac3H11_1220at 39.758 kb on - strand, within Ac3H11_1220at 39.758 kb on - strand, within Ac3H11_1220at 40.022 kb on - strand, within Ac3H11_1220at 40.022 kb on - strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.156 kb on + strandat 40.156 kb on + strandat 40.204 kb on + strandat 40.204 kb on + strandat 40.205 kb on - strandat 40.205 kb on - strandat 40.386 kb on + strand, within Ac3H11_1221at 40.386 kb on + strand, within Ac3H11_1221at 40.387 kb on - strand, within Ac3H11_1221at 40.387 kb on - strand, within Ac3H11_1221at 40.515 kb on + strand, within Ac3H11_1221at 40.515 kb on + strand, within Ac3H11_1221at 40.516 kb on - strand, within Ac3H11_1221at 40.516 kb on - strand, within Ac3H11_1221at 40.647 kb on + strand, within Ac3H11_1221at 40.648 kb on - strand, within Ac3H11_1221at 40.648 kb on - strand, within Ac3H11_1221at 40.707 kb on + strand, within Ac3H11_1221at 40.707 kb on + strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 41.072 kb on + strand, within Ac3H11_1222at 41.072 kb on + strand, within Ac3H11_1222at 41.072 kb on + strand, within Ac3H11_1222at 41.072 kb on + strand, within Ac3H11_1222at 41.085 kb on - strand, within Ac3H11_1222at 41.087 kb on + strand, within Ac3H11_1222at 41.088 kb on - strand, within Ac3H11_1222at 41.150 kb on + strand, within Ac3H11_1222at 41.150 kb on + strand, within Ac3H11_1222at 41.290 kb on + strand, within Ac3H11_1222at 41.328 kb on - strand, within Ac3H11_1222at 41.510 kb on - strand, within Ac3H11_1222at 41.510 kb on - strand, within Ac3H11_1222at 41.510 kb on - strand, within Ac3H11_1222at 41.552 kb on + strandat 41.552 kb on + strandat 41.606 kb on + strandat 41.606 kb on + strandat 41.679 kb on + strand, within Ac3H11_1223at 41.679 kb on + strand, within Ac3H11_1223at 41.680 kb on - strand, within Ac3H11_1223at 41.680 kb on - strand, within Ac3H11_1223at 41.699 kb on + strand, within Ac3H11_1223at 41.700 kb on - strand, within Ac3H11_1223at 41.748 kb on + strand, within Ac3H11_1223at 41.748 kb on + strand, within Ac3H11_1223at 41.748 kb on + strand, within Ac3H11_1223

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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39,276 - Ac3H11_1220 0.24 -0.3
39,328 + Ac3H11_1220 0.28 -0.4
39,337 + Ac3H11_1220 0.29 +0.2
39,338 - Ac3H11_1220 0.29 +0.3
39,450 - Ac3H11_1220 0.38 -1.6
39,532 + Ac3H11_1220 0.44 -0.3
39,757 + Ac3H11_1220 0.62 -1.0
39,758 - Ac3H11_1220 0.62 +0.6
39,758 - Ac3H11_1220 0.62 -0.7
40,022 - Ac3H11_1220 0.82 -1.7
40,022 - Ac3H11_1220 0.82 -0.8
40,105 + Ac3H11_1220 0.89 -0.5
40,105 + Ac3H11_1220 0.89 -0.0
40,105 + Ac3H11_1220 0.89 +0.1
40,105 + Ac3H11_1220 0.89 +1.8
40,156 + +0.4
40,156 + +1.1
40,204 + -0.1
40,204 + +0.1
40,205 - +1.4
40,205 - -0.1
40,386 + Ac3H11_1221 0.22 +1.6
40,386 + Ac3H11_1221 0.22 +0.3
40,387 - Ac3H11_1221 0.22 -0.2
40,387 - Ac3H11_1221 0.22 -0.6
40,515 + Ac3H11_1221 0.46 -0.1
40,515 + Ac3H11_1221 0.46 +0.1
40,516 - Ac3H11_1221 0.46 +0.9
40,516 - Ac3H11_1221 0.46 -0.4
40,647 + Ac3H11_1221 0.70 -1.5
40,648 - Ac3H11_1221 0.70 -0.4
40,648 - Ac3H11_1221 0.70 +0.0
40,707 + Ac3H11_1221 0.81 +2.4
40,707 + Ac3H11_1221 0.81 +0.5
40,708 - Ac3H11_1221 0.81 -0.3
40,708 - Ac3H11_1221 0.81 -1.7
40,708 - Ac3H11_1221 0.81 -1.0
40,708 - Ac3H11_1221 0.81 +0.3
40,708 - Ac3H11_1221 0.81 -0.8
41,072 + Ac3H11_1222 0.33 -0.6
41,072 + Ac3H11_1222 0.33 -1.4
41,072 + Ac3H11_1222 0.33 +0.3
41,072 + Ac3H11_1222 0.33 -1.2
41,085 - Ac3H11_1222 0.34 -0.1
41,087 + Ac3H11_1222 0.35 -1.0
41,088 - Ac3H11_1222 0.35 -2.0
41,150 + Ac3H11_1222 0.43 +0.2
41,150 + Ac3H11_1222 0.43 -0.1
41,290 + Ac3H11_1222 0.61 -0.7
41,328 - Ac3H11_1222 0.66 -0.7
41,510 - Ac3H11_1222 0.90 -1.8
41,510 - Ac3H11_1222 0.90 -0.0
41,510 - Ac3H11_1222 0.90 -0.2
41,552 + +1.2
41,552 + -0.1
41,606 + -0.1
41,606 + -2.1
41,679 + Ac3H11_1223 0.19 -0.3
41,679 + Ac3H11_1223 0.19 -0.9
41,680 - Ac3H11_1223 0.19 -0.2
41,680 - Ac3H11_1223 0.19 +1.9
41,699 + Ac3H11_1223 0.23 +0.0
41,700 - Ac3H11_1223 0.23 -0.4
41,748 + Ac3H11_1223 0.34 +2.2
41,748 + Ac3H11_1223 0.34 +1.0
41,748 + Ac3H11_1223 0.34 -0.3

Or see this region's nucleotide sequence