Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1002

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1001 and Ac3H11_1002 are separated by 295 nucleotidesAc3H11_1002 and Ac3H11_1003 are separated by 136 nucleotides Ac3H11_1001 - GGDEF/PAS/PAC-domain containing protein, at 124,548 to 125,720 _1001 Ac3H11_1002 - ABC transporter ATP-binding protein, at 126,016 to 127,086 _1002 Ac3H11_1003 - ABC transporter substrate-binding protein, at 127,223 to 128,461 _1003 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 125.161 kb on + strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.173 kb on + strand, within Ac3H11_1001at 125.173 kb on + strand, within Ac3H11_1001at 125.173 kb on + strand, within Ac3H11_1001at 125.174 kb on - strand, within Ac3H11_1001at 125.174 kb on - strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.389 kb on + strand, within Ac3H11_1001at 125.390 kb on - strand, within Ac3H11_1001at 125.404 kb on + strand, within Ac3H11_1001at 125.404 kb on + strand, within Ac3H11_1001at 125.404 kb on + strand, within Ac3H11_1001at 125.404 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.501 kb on - strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.504 kb on - strand, within Ac3H11_1001at 125.504 kb on - strand, within Ac3H11_1001at 125.504 kb on - strand, within Ac3H11_1001at 125.793 kb on - strandat 125.807 kb on + strandat 125.807 kb on + strandat 125.808 kb on - strandat 125.808 kb on - strandat 125.809 kb on + strandat 125.810 kb on - strandat 125.810 kb on - strandat 125.967 kb on - strandat 126.079 kb on + strandat 126.079 kb on + strandat 126.079 kb on + strandat 126.080 kb on - strandat 126.136 kb on + strand, within Ac3H11_1002at 126.136 kb on + strand, within Ac3H11_1002at 126.136 kb on + strand, within Ac3H11_1002at 126.137 kb on + strand, within Ac3H11_1002at 126.137 kb on - strand, within Ac3H11_1002at 126.709 kb on + strand, within Ac3H11_1002at 126.710 kb on - strand, within Ac3H11_1002at 126.756 kb on + strand, within Ac3H11_1002at 126.756 kb on + strand, within Ac3H11_1002at 126.881 kb on - strand, within Ac3H11_1002at 126.881 kb on - strand, within Ac3H11_1002at 126.881 kb on - strand, within Ac3H11_1002at 126.892 kb on + strand, within Ac3H11_1002at 126.892 kb on + strand, within Ac3H11_1002at 126.893 kb on - strand, within Ac3H11_1002at 126.893 kb on - strand, within Ac3H11_1002at 126.893 kb on - strand, within Ac3H11_1002at 126.893 kb on - strand, within Ac3H11_1002at 126.893 kb on - strand, within Ac3H11_1002at 126.952 kb on + strand, within Ac3H11_1002at 127.391 kb on + strand, within Ac3H11_1003at 127.391 kb on + strand, within Ac3H11_1003at 127.391 kb on + strand, within Ac3H11_1003at 127.392 kb on - strand, within Ac3H11_1003at 127.392 kb on - strand, within Ac3H11_1003at 127.392 kb on - strand, within Ac3H11_1003at 127.469 kb on + strand, within Ac3H11_1003at 127.469 kb on + strand, within Ac3H11_1003at 127.469 kb on + strand, within Ac3H11_1003at 127.470 kb on - strand, within Ac3H11_1003at 127.625 kb on + strand, within Ac3H11_1003at 127.625 kb on + strand, within Ac3H11_1003at 127.626 kb on - strand, within Ac3H11_1003at 127.697 kb on + strand, within Ac3H11_1003at 127.808 kb on - strand, within Ac3H11_1003at 127.859 kb on + strand, within Ac3H11_1003at 127.859 kb on + strand, within Ac3H11_1003at 127.859 kb on + strand, within Ac3H11_1003at 127.859 kb on + strand, within Ac3H11_1003at 127.859 kb on + strand, within Ac3H11_1003at 127.859 kb on + strand, within Ac3H11_1003at 127.860 kb on - strand, within Ac3H11_1003at 127.860 kb on - strand, within Ac3H11_1003at 127.860 kb on - strand, within Ac3H11_1003at 127.860 kb on - strand, within Ac3H11_1003at 127.865 kb on + strand, within Ac3H11_1003at 127.865 kb on + strand, within Ac3H11_1003

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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125,161 + Ac3H11_1001 0.52 -0.4
125,162 - Ac3H11_1001 0.52 -0.1
125,162 - Ac3H11_1001 0.52 +0.7
125,162 - Ac3H11_1001 0.52 +0.5
125,162 - Ac3H11_1001 0.52 +0.7
125,162 - Ac3H11_1001 0.52 +2.0
125,162 - Ac3H11_1001 0.52 +0.2
125,173 + Ac3H11_1001 0.53 -1.0
125,173 + Ac3H11_1001 0.53 +0.3
125,173 + Ac3H11_1001 0.53 +0.3
125,174 - Ac3H11_1001 0.53 -0.0
125,174 - Ac3H11_1001 0.53 -0.1
125,344 + Ac3H11_1001 0.68 -0.1
125,344 + Ac3H11_1001 0.68 +1.0
125,344 + Ac3H11_1001 0.68 +0.4
125,344 + Ac3H11_1001 0.68 -0.3
125,344 + Ac3H11_1001 0.68 -0.0
125,344 + Ac3H11_1001 0.68 +1.1
125,344 + Ac3H11_1001 0.68 -0.4
125,344 + Ac3H11_1001 0.68 +0.8
125,345 - Ac3H11_1001 0.68 -0.2
125,345 - Ac3H11_1001 0.68 -0.3
125,345 - Ac3H11_1001 0.68 -1.0
125,345 - Ac3H11_1001 0.68 +0.0
125,345 - Ac3H11_1001 0.68 -0.0
125,345 - Ac3H11_1001 0.68 +0.8
125,345 - Ac3H11_1001 0.68 +1.4
125,345 - Ac3H11_1001 0.68 +0.4
125,345 - Ac3H11_1001 0.68 +0.1
125,389 + Ac3H11_1001 0.72 -0.0
125,390 - Ac3H11_1001 0.72 +1.4
125,404 + Ac3H11_1001 0.73 -0.6
125,404 + Ac3H11_1001 0.73 +0.5
125,404 + Ac3H11_1001 0.73 +0.8
125,404 + Ac3H11_1001 0.73 -1.2
125,500 + Ac3H11_1001 0.81 -1.1
125,500 + Ac3H11_1001 0.81 +0.3
125,500 + Ac3H11_1001 0.81 -0.3
125,500 + Ac3H11_1001 0.81 -0.9
125,500 + Ac3H11_1001 0.81 -0.9
125,500 + Ac3H11_1001 0.81 +0.7
125,500 + Ac3H11_1001 0.81 -0.2
125,501 - Ac3H11_1001 0.81 +0.7
125,503 + Ac3H11_1001 0.81 -0.1
125,503 + Ac3H11_1001 0.81 -0.0
125,503 + Ac3H11_1001 0.81 -0.2
125,503 + Ac3H11_1001 0.81 +0.8
125,503 + Ac3H11_1001 0.81 +0.8
125,503 + Ac3H11_1001 0.81 -0.2
125,503 + Ac3H11_1001 0.81 -2.8
125,504 - Ac3H11_1001 0.82 +1.3
125,504 - Ac3H11_1001 0.82 +0.7
125,504 - Ac3H11_1001 0.82 -0.2
125,793 - +0.1
125,807 + +0.8
125,807 + -0.5
125,808 - -0.5
125,808 - -1.0
125,809 + -0.5
125,810 - -1.3
125,810 - -1.5
125,967 - +2.2
126,079 + -0.5
126,079 + +0.5
126,079 + -0.1
126,080 - -0.6
126,136 + Ac3H11_1002 0.11 -1.6
126,136 + Ac3H11_1002 0.11 -1.6
126,136 + Ac3H11_1002 0.11 +0.6
126,137 + Ac3H11_1002 0.11 +2.0
126,137 - Ac3H11_1002 0.11 -0.2
126,709 + Ac3H11_1002 0.65 +0.5
126,710 - Ac3H11_1002 0.65 -0.9
126,756 + Ac3H11_1002 0.69 -0.0
126,756 + Ac3H11_1002 0.69 -1.6
126,881 - Ac3H11_1002 0.81 +0.2
126,881 - Ac3H11_1002 0.81 -0.6
126,881 - Ac3H11_1002 0.81 -0.2
126,892 + Ac3H11_1002 0.82 +0.7
126,892 + Ac3H11_1002 0.82 +0.7
126,893 - Ac3H11_1002 0.82 +0.1
126,893 - Ac3H11_1002 0.82 -1.3
126,893 - Ac3H11_1002 0.82 -0.8
126,893 - Ac3H11_1002 0.82 -0.1
126,893 - Ac3H11_1002 0.82 -0.0
126,952 + Ac3H11_1002 0.87 +0.9
127,391 + Ac3H11_1003 0.14 -0.4
127,391 + Ac3H11_1003 0.14 +0.0
127,391 + Ac3H11_1003 0.14 +0.9
127,392 - Ac3H11_1003 0.14 -0.8
127,392 - Ac3H11_1003 0.14 -2.9
127,392 - Ac3H11_1003 0.14 +2.6
127,469 + Ac3H11_1003 0.20 -1.8
127,469 + Ac3H11_1003 0.20 -1.0
127,469 + Ac3H11_1003 0.20 -0.3
127,470 - Ac3H11_1003 0.20 +0.7
127,625 + Ac3H11_1003 0.32 -0.7
127,625 + Ac3H11_1003 0.32 -0.0
127,626 - Ac3H11_1003 0.33 -1.3
127,697 + Ac3H11_1003 0.38 -0.2
127,808 - Ac3H11_1003 0.47 +2.0
127,859 + Ac3H11_1003 0.51 +1.5
127,859 + Ac3H11_1003 0.51 -0.7
127,859 + Ac3H11_1003 0.51 +0.6
127,859 + Ac3H11_1003 0.51 -1.1
127,859 + Ac3H11_1003 0.51 +0.3
127,859 + Ac3H11_1003 0.51 +0.6
127,860 - Ac3H11_1003 0.51 +0.4
127,860 - Ac3H11_1003 0.51 -0.6
127,860 - Ac3H11_1003 0.51 -1.3
127,860 - Ac3H11_1003 0.51 +1.3
127,865 + Ac3H11_1003 0.52 -0.5
127,865 + Ac3H11_1003 0.52 -1.0

Or see this region's nucleotide sequence