Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08890 and AZOBR_RS08895 are separated by 68 nucleotides AZOBR_RS08895 and AZOBR_RS08900 are separated by 212 nucleotides AZOBR_RS08900 and AZOBR_RS08905 are separated by 525 nucleotides
AZOBR_RS08890: AZOBR_RS08890 - DNA-binding protein, at 1,861,977 to 1,862,252
_RS08890
AZOBR_RS08895: AZOBR_RS08895 - MucR family transcriptional regulator, at 1,862,321 to 1,862,731
_RS08895
AZOBR_RS08900: AZOBR_RS08900 - GCN5 family N-acetyltransferase, at 1,862,944 to 1,863,468
_RS08900
AZOBR_RS08905: AZOBR_RS08905 - RNA polymerase sigma 70, at 1,863,994 to 1,864,884
_RS08905
Position (kb)
1862
1863
1864 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1862.375 kb on + strand, within AZOBR_RS08895 at 1862.375 kb on + strand, within AZOBR_RS08895 at 1862.376 kb on - strand, within AZOBR_RS08895 at 1862.376 kb on - strand, within AZOBR_RS08895 at 1862.376 kb on - strand, within AZOBR_RS08895 at 1862.528 kb on + strand, within AZOBR_RS08895 at 1862.529 kb on - strand, within AZOBR_RS08895 at 1862.529 kb on - strand, within AZOBR_RS08895 at 1862.591 kb on + strand, within AZOBR_RS08895 at 1862.663 kb on + strand, within AZOBR_RS08895 at 1862.664 kb on - strand, within AZOBR_RS08895 at 1862.749 kb on + strand at 1862.750 kb on - strand at 1862.750 kb on - strand at 1863.070 kb on - strand, within AZOBR_RS08900 at 1863.269 kb on + strand, within AZOBR_RS08900 at 1863.269 kb on + strand, within AZOBR_RS08900 at 1863.270 kb on - strand, within AZOBR_RS08900 at 1863.270 kb on - strand, within AZOBR_RS08900 at 1863.275 kb on + strand, within AZOBR_RS08900 at 1863.275 kb on + strand, within AZOBR_RS08900 at 1863.275 kb on + strand, within AZOBR_RS08900 at 1863.280 kb on + strand, within AZOBR_RS08900 at 1863.280 kb on + strand, within AZOBR_RS08900 at 1863.280 kb on + strand, within AZOBR_RS08900 at 1863.281 kb on - strand, within AZOBR_RS08900 at 1863.281 kb on - strand, within AZOBR_RS08900 at 1863.281 kb on - strand, within AZOBR_RS08900 at 1863.281 kb on - strand, within AZOBR_RS08900 at 1863.281 kb on - strand, within AZOBR_RS08900 at 1863.281 kb on - strand, within AZOBR_RS08900 at 1863.310 kb on - strand, within AZOBR_RS08900 at 1863.310 kb on - strand, within AZOBR_RS08900 at 1863.311 kb on + strand, within AZOBR_RS08900 at 1863.311 kb on + strand, within AZOBR_RS08900 at 1863.311 kb on + strand, within AZOBR_RS08900 at 1863.311 kb on + strand, within AZOBR_RS08900 at 1863.311 kb on + strand, within AZOBR_RS08900 at 1863.311 kb on + strand, within AZOBR_RS08900 at 1863.311 kb on + strand, within AZOBR_RS08900 at 1863.311 kb on + strand, within AZOBR_RS08900 at 1863.311 kb on + strand, within AZOBR_RS08900 at 1863.312 kb on - strand, within AZOBR_RS08900 at 1863.312 kb on - strand, within AZOBR_RS08900 at 1863.312 kb on - strand, within AZOBR_RS08900 at 1863.312 kb on - strand, within AZOBR_RS08900 at 1863.318 kb on + strand, within AZOBR_RS08900 at 1863.416 kb on + strand at 1863.416 kb on + strand at 1863.417 kb on - strand at 1863.417 kb on - strand at 1863.594 kb on + strand at 1863.594 kb on + strand at 1863.595 kb on - strand at 1863.766 kb on + strand at 1863.788 kb on + strand at 1863.854 kb on - strand at 1863.854 kb on - strand at 1863.904 kb on + strand at 1863.905 kb on - strand at 1864.039 kb on + strand at 1864.295 kb on - strand, within AZOBR_RS08905 at 1864.295 kb on - strand, within AZOBR_RS08905 at 1864.323 kb on - strand, within AZOBR_RS08905 at 1864.331 kb on - strand, within AZOBR_RS08905 at 1864.331 kb on - strand, within AZOBR_RS08905 at 1864.331 kb on - strand, within AZOBR_RS08905 at 1864.331 kb on - strand, within AZOBR_RS08905 at 1864.331 kb on - strand, within AZOBR_RS08905
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 1,862,375 + AZOBR_RS08895 0.13 -0.4 1,862,375 + AZOBR_RS08895 0.13 -0.7 1,862,376 - AZOBR_RS08895 0.13 +0.5 1,862,376 - AZOBR_RS08895 0.13 +0.2 1,862,376 - AZOBR_RS08895 0.13 +0.5 1,862,528 + AZOBR_RS08895 0.50 -1.5 1,862,529 - AZOBR_RS08895 0.51 +0.1 1,862,529 - AZOBR_RS08895 0.51 -0.2 1,862,591 + AZOBR_RS08895 0.66 -0.0 1,862,663 + AZOBR_RS08895 0.83 +0.4 1,862,664 - AZOBR_RS08895 0.83 +0.2 1,862,749 + +0.6 1,862,750 - -0.6 1,862,750 - +1.5 1,863,070 - AZOBR_RS08900 0.24 +1.1 1,863,269 + AZOBR_RS08900 0.62 +0.2 1,863,269 + AZOBR_RS08900 0.62 +1.1 1,863,270 - AZOBR_RS08900 0.62 +0.2 1,863,270 - AZOBR_RS08900 0.62 +0.6 1,863,275 + AZOBR_RS08900 0.63 +0.8 1,863,275 + AZOBR_RS08900 0.63 +0.2 1,863,275 + AZOBR_RS08900 0.63 -3.2 1,863,280 + AZOBR_RS08900 0.64 +0.4 1,863,280 + AZOBR_RS08900 0.64 +0.6 1,863,280 + AZOBR_RS08900 0.64 -0.0 1,863,281 - AZOBR_RS08900 0.64 +0.9 1,863,281 - AZOBR_RS08900 0.64 -0.3 1,863,281 - AZOBR_RS08900 0.64 -0.3 1,863,281 - AZOBR_RS08900 0.64 +0.0 1,863,281 - AZOBR_RS08900 0.64 +0.3 1,863,281 - AZOBR_RS08900 0.64 -0.5 1,863,310 - AZOBR_RS08900 0.70 +0.8 1,863,310 - AZOBR_RS08900 0.70 +0.2 1,863,311 + AZOBR_RS08900 0.70 +0.1 1,863,311 + AZOBR_RS08900 0.70 +0.1 1,863,311 + AZOBR_RS08900 0.70 -1.3 1,863,311 + AZOBR_RS08900 0.70 +1.1 1,863,311 + AZOBR_RS08900 0.70 +0.3 1,863,311 + AZOBR_RS08900 0.70 +0.1 1,863,311 + AZOBR_RS08900 0.70 +0.4 1,863,311 + AZOBR_RS08900 0.70 +0.8 1,863,311 + AZOBR_RS08900 0.70 +0.6 1,863,312 - AZOBR_RS08900 0.70 -0.9 1,863,312 - AZOBR_RS08900 0.70 +0.1 1,863,312 - AZOBR_RS08900 0.70 -0.7 1,863,312 - AZOBR_RS08900 0.70 +0.4 1,863,318 + AZOBR_RS08900 0.71 +0.7 1,863,416 + -0.6 1,863,416 + +0.0 1,863,417 - -0.9 1,863,417 - +0.2 1,863,594 + +0.8 1,863,594 + +1.6 1,863,595 - -0.1 1,863,766 + -0.6 1,863,788 + -1.2 1,863,854 - -0.5 1,863,854 - -0.0 1,863,904 + -0.1 1,863,905 - -0.1 1,864,039 + +0.1 1,864,295 - AZOBR_RS08905 0.34 -0.1 1,864,295 - AZOBR_RS08905 0.34 +0.7 1,864,323 - AZOBR_RS08905 0.37 -1.1 1,864,331 - AZOBR_RS08905 0.38 -0.9 1,864,331 - AZOBR_RS08905 0.38 -0.4 1,864,331 - AZOBR_RS08905 0.38 +0.5 1,864,331 - AZOBR_RS08905 0.38 -2.8 1,864,331 - AZOBR_RS08905 0.38 -0.3
Or see this region's nucleotide sequence