Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08300

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08285 and AZOBR_RS08290 are separated by 235 nucleotidesAZOBR_RS08290 and AZOBR_RS08295 are separated by 85 nucleotidesAZOBR_RS08295 and AZOBR_RS08300 are separated by 19 nucleotidesAZOBR_RS08300 and AZOBR_RS08305 are separated by 42 nucleotidesAZOBR_RS08305 and AZOBR_RS08310 are separated by 90 nucleotides AZOBR_RS08285: AZOBR_RS08285 - histidine kinase, at 1,743,774 to 1,745,237 _RS08285 AZOBR_RS08290: AZOBR_RS08290 - hypothetical protein, at 1,745,473 to 1,745,688 _RS08290 AZOBR_RS08295: AZOBR_RS08295 - membrane protein, at 1,745,774 to 1,746,214 _RS08295 AZOBR_RS08300: AZOBR_RS08300 - pseudouridine synthase, at 1,746,234 to 1,746,923 _RS08300 AZOBR_RS08305: AZOBR_RS08305 - oxidoreductase, at 1,746,966 to 1,747,676 _RS08305 AZOBR_RS08310: AZOBR_RS08310 - amidophosphoribosyltransferase, at 1,747,767 to 1,749,215 _RS08310 Position (kb) 1746 1747Strain fitness (log2 ratio) -2 -1 0 1 2at 1745.309 kb on + strandat 1745.310 kb on - strandat 1745.365 kb on + strandat 1745.366 kb on - strandat 1745.721 kb on - strandat 1745.721 kb on - strandat 1745.721 kb on - strandat 1745.790 kb on + strandat 1745.790 kb on + strandat 1745.791 kb on - strandat 1745.791 kb on - strandat 1745.801 kb on + strandat 1745.830 kb on - strand, within AZOBR_RS08295at 1746.011 kb on + strand, within AZOBR_RS08295at 1746.150 kb on - strand, within AZOBR_RS08295at 1746.213 kb on - strandat 1746.284 kb on + strandat 1746.649 kb on + strand, within AZOBR_RS08300at 1746.649 kb on + strand, within AZOBR_RS08300at 1746.649 kb on + strand, within AZOBR_RS08300at 1746.649 kb on + strand, within AZOBR_RS08300at 1746.650 kb on - strand, within AZOBR_RS08300at 1746.650 kb on - strand, within AZOBR_RS08300at 1746.889 kb on + strandat 1747.165 kb on + strand, within AZOBR_RS08305at 1747.165 kb on + strand, within AZOBR_RS08305at 1747.165 kb on + strand, within AZOBR_RS08305at 1747.165 kb on + strand, within AZOBR_RS08305at 1747.367 kb on - strandat 1747.450 kb on + strand, within AZOBR_RS08305

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,745,309 + -0.3
1,745,310 - +0.1
1,745,365 + -0.5
1,745,366 - +0.4
1,745,721 - -0.2
1,745,721 - +0.2
1,745,721 - +0.4
1,745,790 + +1.9
1,745,790 + -0.5
1,745,791 - +0.2
1,745,791 - -1.7
1,745,801 + +0.0
1,745,830 - AZOBR_RS08295 0.13 -0.5
1,746,011 + AZOBR_RS08295 0.54 +0.7
1,746,150 - AZOBR_RS08295 0.85 +0.3
1,746,213 - +0.2
1,746,284 + -1.7
1,746,649 + AZOBR_RS08300 0.60 -0.3
1,746,649 + AZOBR_RS08300 0.60 -0.1
1,746,649 + AZOBR_RS08300 0.60 -0.2
1,746,649 + AZOBR_RS08300 0.60 -0.7
1,746,650 - AZOBR_RS08300 0.60 -0.2
1,746,650 - AZOBR_RS08300 0.60 -1.4
1,746,889 + -0.0
1,747,165 + AZOBR_RS08305 0.28 -0.3
1,747,165 + AZOBR_RS08305 0.28 -2.2
1,747,165 + AZOBR_RS08305 0.28 -0.5
1,747,165 + AZOBR_RS08305 0.28 -1.3
1,747,367 - +2.2
1,747,450 + AZOBR_RS08305 0.68 -0.6

Or see this region's nucleotide sequence