Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08200

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08200 and AZOBR_RS08205 are separated by 133 nucleotidesAZOBR_RS08205 and AZOBR_RS08210 are separated by 31 nucleotides AZOBR_RS08200: AZOBR_RS08200 - serine protease, at 1,727,612 to 1,729,147 _RS08200 AZOBR_RS08205: AZOBR_RS08205 - glycosyl transferase, at 1,729,281 to 1,730,009 _RS08205 AZOBR_RS08210: AZOBR_RS08210 - lipid A biosynthesis, at 1,730,041 to 1,730,376 _RS08210 Position (kb) 1727 1728 1729 1730Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1726.909 kb on + strandat 1727.064 kb on + strandat 1727.064 kb on + strandat 1727.064 kb on + strandat 1727.064 kb on + strandat 1727.104 kb on - strandat 1727.273 kb on + strandat 1727.274 kb on - strandat 1727.341 kb on + strandat 1727.341 kb on + strandat 1727.342 kb on - strandat 1727.342 kb on - strandat 1727.375 kb on + strandat 1728.285 kb on - strand, within AZOBR_RS08200at 1728.293 kb on + strand, within AZOBR_RS08200at 1728.294 kb on - strand, within AZOBR_RS08200at 1728.386 kb on + strand, within AZOBR_RS08200at 1728.386 kb on + strand, within AZOBR_RS08200at 1728.386 kb on + strand, within AZOBR_RS08200at 1728.387 kb on - strand, within AZOBR_RS08200at 1729.112 kb on + strandat 1729.113 kb on - strandat 1729.216 kb on - strandat 1729.258 kb on + strandat 1729.401 kb on + strand, within AZOBR_RS08205at 1729.401 kb on + strand, within AZOBR_RS08205at 1729.402 kb on - strand, within AZOBR_RS08205at 1729.402 kb on - strand, within AZOBR_RS08205at 1729.402 kb on - strandat 1729.402 kb on - strand, within AZOBR_RS08205at 1729.402 kb on - strand, within AZOBR_RS08205at 1729.402 kb on - strand, within AZOBR_RS08205at 1729.863 kb on + strand, within AZOBR_RS08205at 1729.863 kb on + strand, within AZOBR_RS08205at 1729.863 kb on + strand, within AZOBR_RS08205at 1729.863 kb on + strand, within AZOBR_RS08205at 1729.863 kb on + strandat 1729.864 kb on - strand, within AZOBR_RS08205at 1729.864 kb on - strandat 1729.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,726,909 + +2.6
1,727,064 + -0.5
1,727,064 + -0.5
1,727,064 + +0.6
1,727,064 + +0.4
1,727,104 - +0.3
1,727,273 + -0.3
1,727,274 - -0.1
1,727,341 + +0.3
1,727,341 + +0.7
1,727,342 - +0.2
1,727,342 - -1.6
1,727,375 + +0.3
1,728,285 - AZOBR_RS08200 0.44 +0.1
1,728,293 + AZOBR_RS08200 0.44 +0.7
1,728,294 - AZOBR_RS08200 0.44 +1.2
1,728,386 + AZOBR_RS08200 0.50 -0.4
1,728,386 + AZOBR_RS08200 0.50 +0.4
1,728,386 + AZOBR_RS08200 0.50 -0.1
1,728,387 - AZOBR_RS08200 0.50 -0.5
1,729,112 + +0.2
1,729,113 - +0.1
1,729,216 - -1.5
1,729,258 + -0.5
1,729,401 + AZOBR_RS08205 0.16 -0.5
1,729,401 + AZOBR_RS08205 0.16 -3.1
1,729,402 - AZOBR_RS08205 0.17 -3.3
1,729,402 - AZOBR_RS08205 0.17 -1.2
1,729,402 - -0.2
1,729,402 - AZOBR_RS08205 0.17 -0.2
1,729,402 - AZOBR_RS08205 0.17 -1.2
1,729,402 - AZOBR_RS08205 0.17 -1.6
1,729,863 + AZOBR_RS08205 0.80 -2.3
1,729,863 + AZOBR_RS08205 0.80 -2.0
1,729,863 + AZOBR_RS08205 0.80 -0.2
1,729,863 + AZOBR_RS08205 0.80 -2.9
1,729,863 + -0.5
1,729,864 - AZOBR_RS08205 0.80 -2.0
1,729,864 - -0.2
1,729,960 - -1.5

Or see this region's nucleotide sequence