Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06340

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06330 and AZOBR_RS06335 overlap by 29 nucleotidesAZOBR_RS06335 and AZOBR_RS06340 are separated by 183 nucleotidesAZOBR_RS06340 and AZOBR_RS06345 are separated by 77 nucleotidesAZOBR_RS06345 and AZOBR_RS06350 are separated by 292 nucleotides AZOBR_RS06330: AZOBR_RS06330 - hypothetical protein, at 1,341,396 to 1,341,971 _RS06330 AZOBR_RS06335: AZOBR_RS06335 - hypothetical protein, at 1,341,943 to 1,342,434 _RS06335 AZOBR_RS06340: AZOBR_RS06340 - acyl-CoA synthetase, at 1,342,618 to 1,344,540 _RS06340 AZOBR_RS06345: AZOBR_RS06345 - hypothetical protein, at 1,344,618 to 1,344,914 _RS06345 AZOBR_RS06350: AZOBR_RS06350 - thiosulfate sulfurtransferase, at 1,345,207 to 1,346,139 _RS06350 Position (kb) 1342 1343 1344 1345Strain fitness (log2 ratio) -2 -1 0 1at 1341.825 kb on + strand, within AZOBR_RS06330at 1341.825 kb on + strand, within AZOBR_RS06330at 1341.825 kb on + strand, within AZOBR_RS06330at 1341.825 kb on + strand, within AZOBR_RS06330at 1341.826 kb on - strand, within AZOBR_RS06330at 1341.826 kb on - strand, within AZOBR_RS06330at 1341.826 kb on - strand, within AZOBR_RS06330at 1341.826 kb on - strand, within AZOBR_RS06330at 1341.826 kb on - strand, within AZOBR_RS06330at 1341.826 kb on - strand, within AZOBR_RS06330at 1341.826 kb on - strand, within AZOBR_RS06330at 1341.826 kb on - strand, within AZOBR_RS06330at 1342.019 kb on - strand, within AZOBR_RS06335at 1342.135 kb on + strand, within AZOBR_RS06335at 1342.135 kb on + strand, within AZOBR_RS06335at 1342.135 kb on + strand, within AZOBR_RS06335at 1342.136 kb on - strand, within AZOBR_RS06335at 1342.136 kb on - strand, within AZOBR_RS06335at 1342.136 kb on - strand, within AZOBR_RS06335at 1342.237 kb on + strand, within AZOBR_RS06335at 1342.237 kb on + strand, within AZOBR_RS06335at 1342.238 kb on - strand, within AZOBR_RS06335at 1342.369 kb on + strand, within AZOBR_RS06335at 1342.369 kb on + strand, within AZOBR_RS06335at 1342.370 kb on - strand, within AZOBR_RS06335at 1342.433 kb on - strandat 1342.433 kb on - strandat 1342.602 kb on - strandat 1342.604 kb on - strandat 1342.642 kb on + strandat 1342.762 kb on + strandat 1342.763 kb on - strandat 1342.763 kb on - strandat 1342.798 kb on + strandat 1342.798 kb on + strandat 1342.798 kb on + strandat 1342.799 kb on - strandat 1342.799 kb on - strandat 1342.855 kb on + strand, within AZOBR_RS06340at 1342.894 kb on + strand, within AZOBR_RS06340at 1342.894 kb on + strand, within AZOBR_RS06340at 1342.895 kb on - strand, within AZOBR_RS06340at 1342.978 kb on + strand, within AZOBR_RS06340at 1342.979 kb on - strand, within AZOBR_RS06340at 1342.979 kb on - strand, within AZOBR_RS06340at 1342.979 kb on - strand, within AZOBR_RS06340at 1343.158 kb on + strand, within AZOBR_RS06340at 1343.158 kb on + strand, within AZOBR_RS06340at 1343.159 kb on - strand, within AZOBR_RS06340at 1343.159 kb on - strand, within AZOBR_RS06340at 1343.338 kb on + strand, within AZOBR_RS06340at 1343.338 kb on + strand, within AZOBR_RS06340at 1343.338 kb on + strand, within AZOBR_RS06340at 1343.338 kb on + strand, within AZOBR_RS06340at 1343.338 kb on + strand, within AZOBR_RS06340at 1343.339 kb on - strand, within AZOBR_RS06340at 1343.339 kb on - strand, within AZOBR_RS06340at 1343.339 kb on - strand, within AZOBR_RS06340at 1343.339 kb on - strand, within AZOBR_RS06340at 1343.339 kb on - strand, within AZOBR_RS06340at 1343.339 kb on - strand, within AZOBR_RS06340at 1343.347 kb on + strand, within AZOBR_RS06340at 1343.347 kb on + strand, within AZOBR_RS06340at 1343.437 kb on + strand, within AZOBR_RS06340at 1343.437 kb on + strand, within AZOBR_RS06340at 1343.437 kb on + strand, within AZOBR_RS06340at 1343.437 kb on + strand, within AZOBR_RS06340at 1343.438 kb on - strand, within AZOBR_RS06340at 1343.461 kb on + strand, within AZOBR_RS06340at 1343.462 kb on - strand, within AZOBR_RS06340at 1343.462 kb on - strand, within AZOBR_RS06340at 1343.503 kb on + strand, within AZOBR_RS06340at 1343.503 kb on + strand, within AZOBR_RS06340at 1343.504 kb on - strand, within AZOBR_RS06340at 1343.512 kb on + strand, within AZOBR_RS06340at 1343.692 kb on + strand, within AZOBR_RS06340at 1343.692 kb on + strand, within AZOBR_RS06340at 1343.693 kb on - strand, within AZOBR_RS06340at 1343.693 kb on - strand, within AZOBR_RS06340at 1343.693 kb on - strand, within AZOBR_RS06340at 1343.866 kb on + strand, within AZOBR_RS06340at 1343.866 kb on + strand, within AZOBR_RS06340at 1343.866 kb on + strand, within AZOBR_RS06340at 1343.867 kb on - strand, within AZOBR_RS06340at 1343.867 kb on - strand, within AZOBR_RS06340at 1343.867 kb on - strand, within AZOBR_RS06340at 1344.031 kb on + strand, within AZOBR_RS06340at 1344.032 kb on - strand, within AZOBR_RS06340at 1344.055 kb on + strand, within AZOBR_RS06340at 1344.056 kb on - strand, within AZOBR_RS06340at 1344.094 kb on + strand, within AZOBR_RS06340at 1344.094 kb on + strand, within AZOBR_RS06340at 1344.095 kb on - strand, within AZOBR_RS06340at 1344.100 kb on + strand, within AZOBR_RS06340at 1344.100 kb on + strand, within AZOBR_RS06340at 1344.101 kb on - strand, within AZOBR_RS06340at 1344.101 kb on - strand, within AZOBR_RS06340at 1344.101 kb on - strand, within AZOBR_RS06340at 1344.101 kb on - strand, within AZOBR_RS06340at 1344.442 kb on + strandat 1344.926 kb on + strandat 1344.926 kb on + strandat 1344.926 kb on + strandat 1345.378 kb on + strand, within AZOBR_RS06350

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,341,825 + AZOBR_RS06330 0.74 -0.4
1,341,825 + AZOBR_RS06330 0.74 -0.5
1,341,825 + AZOBR_RS06330 0.74 -1.3
1,341,825 + AZOBR_RS06330 0.74 -0.2
1,341,826 - AZOBR_RS06330 0.75 -0.4
1,341,826 - AZOBR_RS06330 0.75 +0.3
1,341,826 - AZOBR_RS06330 0.75 -0.0
1,341,826 - AZOBR_RS06330 0.75 +0.5
1,341,826 - AZOBR_RS06330 0.75 +0.1
1,341,826 - AZOBR_RS06330 0.75 -0.1
1,341,826 - AZOBR_RS06330 0.75 +0.1
1,341,826 - AZOBR_RS06330 0.75 +0.0
1,342,019 - AZOBR_RS06335 0.15 -0.0
1,342,135 + AZOBR_RS06335 0.39 +0.3
1,342,135 + AZOBR_RS06335 0.39 +0.2
1,342,135 + AZOBR_RS06335 0.39 -0.7
1,342,136 - AZOBR_RS06335 0.39 +0.6
1,342,136 - AZOBR_RS06335 0.39 +0.7
1,342,136 - AZOBR_RS06335 0.39 +0.6
1,342,237 + AZOBR_RS06335 0.60 +0.7
1,342,237 + AZOBR_RS06335 0.60 +0.2
1,342,238 - AZOBR_RS06335 0.60 +0.6
1,342,369 + AZOBR_RS06335 0.87 +0.3
1,342,369 + AZOBR_RS06335 0.87 +0.2
1,342,370 - AZOBR_RS06335 0.87 -0.0
1,342,433 - +0.0
1,342,433 - -0.9
1,342,602 - -1.2
1,342,604 - +0.3
1,342,642 + +0.1
1,342,762 + -0.0
1,342,763 - -0.1
1,342,763 - +0.0
1,342,798 + +0.5
1,342,798 + +0.2
1,342,798 + +0.1
1,342,799 - +0.2
1,342,799 - +0.1
1,342,855 + AZOBR_RS06340 0.12 -1.1
1,342,894 + AZOBR_RS06340 0.14 +0.4
1,342,894 + AZOBR_RS06340 0.14 +0.8
1,342,895 - AZOBR_RS06340 0.14 +0.7
1,342,978 + AZOBR_RS06340 0.19 -0.2
1,342,979 - AZOBR_RS06340 0.19 -1.0
1,342,979 - AZOBR_RS06340 0.19 +0.4
1,342,979 - AZOBR_RS06340 0.19 -0.1
1,343,158 + AZOBR_RS06340 0.28 -0.9
1,343,158 + AZOBR_RS06340 0.28 +0.1
1,343,159 - AZOBR_RS06340 0.28 +0.2
1,343,159 - AZOBR_RS06340 0.28 +0.3
1,343,338 + AZOBR_RS06340 0.37 -0.6
1,343,338 + AZOBR_RS06340 0.37 +0.2
1,343,338 + AZOBR_RS06340 0.37 +0.1
1,343,338 + AZOBR_RS06340 0.37 -0.1
1,343,338 + AZOBR_RS06340 0.37 -0.6
1,343,339 - AZOBR_RS06340 0.37 +0.1
1,343,339 - AZOBR_RS06340 0.37 -0.6
1,343,339 - AZOBR_RS06340 0.37 +0.0
1,343,339 - AZOBR_RS06340 0.37 +0.4
1,343,339 - AZOBR_RS06340 0.37 -0.4
1,343,339 - AZOBR_RS06340 0.37 +0.8
1,343,347 + AZOBR_RS06340 0.38 -2.6
1,343,347 + AZOBR_RS06340 0.38 -1.0
1,343,437 + AZOBR_RS06340 0.43 -0.4
1,343,437 + AZOBR_RS06340 0.43 -2.4
1,343,437 + AZOBR_RS06340 0.43 -1.1
1,343,437 + AZOBR_RS06340 0.43 +0.4
1,343,438 - AZOBR_RS06340 0.43 +0.4
1,343,461 + AZOBR_RS06340 0.44 +0.4
1,343,462 - AZOBR_RS06340 0.44 -0.3
1,343,462 - AZOBR_RS06340 0.44 +0.4
1,343,503 + AZOBR_RS06340 0.46 +0.1
1,343,503 + AZOBR_RS06340 0.46 -0.7
1,343,504 - AZOBR_RS06340 0.46 -1.9
1,343,512 + AZOBR_RS06340 0.46 +0.1
1,343,692 + AZOBR_RS06340 0.56 -2.7
1,343,692 + AZOBR_RS06340 0.56 -0.3
1,343,693 - AZOBR_RS06340 0.56 +0.2
1,343,693 - AZOBR_RS06340 0.56 +0.2
1,343,693 - AZOBR_RS06340 0.56 +0.4
1,343,866 + AZOBR_RS06340 0.65 -1.0
1,343,866 + AZOBR_RS06340 0.65 +0.6
1,343,866 + AZOBR_RS06340 0.65 -0.2
1,343,867 - AZOBR_RS06340 0.65 -0.3
1,343,867 - AZOBR_RS06340 0.65 -0.0
1,343,867 - AZOBR_RS06340 0.65 -0.0
1,344,031 + AZOBR_RS06340 0.73 -0.1
1,344,032 - AZOBR_RS06340 0.74 -0.5
1,344,055 + AZOBR_RS06340 0.75 -2.1
1,344,056 - AZOBR_RS06340 0.75 -0.6
1,344,094 + AZOBR_RS06340 0.77 -1.2
1,344,094 + AZOBR_RS06340 0.77 -0.7
1,344,095 - AZOBR_RS06340 0.77 -0.0
1,344,100 + AZOBR_RS06340 0.77 +0.3
1,344,100 + AZOBR_RS06340 0.77 +0.7
1,344,101 - AZOBR_RS06340 0.77 +0.1
1,344,101 - AZOBR_RS06340 0.77 +0.6
1,344,101 - AZOBR_RS06340 0.77 +0.2
1,344,101 - AZOBR_RS06340 0.77 -1.8
1,344,442 + +0.1
1,344,926 + +1.1
1,344,926 + +0.2
1,344,926 + -0.6
1,345,378 + AZOBR_RS06350 0.18 -0.0

Or see this region's nucleotide sequence