Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00230

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00225 and AZOBR_RS00230 are separated by 234 nucleotidesAZOBR_RS00230 and AZOBR_RS00235 are separated by 127 nucleotides AZOBR_RS00225: AZOBR_RS00225 - purine biosynthesis protein purH, at 37,553 to 39,157 _RS00225 AZOBR_RS00230: AZOBR_RS00230 - hypothetical protein, at 39,392 to 41,044 _RS00230 AZOBR_RS00235: AZOBR_RS00235 - MFS transporter, at 41,172 to 42,488 _RS00235 Position (kb) 39 40 41 42Strain fitness (log2 ratio) -1 0 1at 41.253 kb on + strandat 41.254 kb on - strandat 41.254 kb on - strandat 41.254 kb on - strandat 41.416 kb on + strand, within AZOBR_RS00235at 41.417 kb on - strand, within AZOBR_RS00235at 41.417 kb on - strand, within AZOBR_RS00235at 41.765 kb on - strand, within AZOBR_RS00235

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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41,253 + +0.6
41,254 - +0.4
41,254 - -0.1
41,254 - +0.2
41,416 + AZOBR_RS00235 0.19 +0.5
41,417 - AZOBR_RS00235 0.19 +0.5
41,417 - AZOBR_RS00235 0.19 +0.3
41,765 - AZOBR_RS00235 0.45 +1.1

Or see this region's nucleotide sequence