Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26810 and AO353_26815 are separated by 316 nucleotides AO353_26815 and AO353_26820 overlap by 23 nucleotides AO353_26820 and AO353_26825 are separated by 135 nucleotides AO353_26825 and AO353_26830 are separated by 205 nucleotides
AO353_26810: AO353_26810 - (2Fe-2S)-binding protein, at 5,873,138 to 5,873,452
_26810
AO353_26815: AO353_26815 - transcriptional regulator, at 5,873,769 to 5,874,452
_26815
AO353_26820: AO353_26820 - histidine kinase, at 5,874,430 to 5,875,824
_26820
AO353_26825: AO353_26825 - bifunctional pyrazinamidase/nicotinamidase, at 5,875,960 to 5,876,598
_26825
AO353_26830: AO353_26830 - histidine kinase, at 5,876,804 to 5,878,105
_26830
Position (kb) 5874
5875
5876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 5873.434 kb on + strand at 5873.542 kb on + strand at 5873.542 kb on + strand at 5873.542 kb on + strand at 5873.542 kb on + strand at 5873.543 kb on - strand at 5873.543 kb on - strand at 5873.543 kb on - strand at 5873.556 kb on - strand at 5873.574 kb on + strand at 5873.580 kb on - strand at 5873.586 kb on + strand at 5873.681 kb on - strand at 5873.701 kb on + strand at 5873.702 kb on - strand at 5873.742 kb on + strand at 5873.743 kb on - strand at 5873.743 kb on - strand at 5873.743 kb on - strand at 5873.743 kb on - strand at 5873.751 kb on + strand at 5873.751 kb on + strand at 5873.751 kb on + strand at 5873.905 kb on - strand, within AO353_26815 at 5874.063 kb on + strand, within AO353_26815 at 5874.144 kb on + strand, within AO353_26815 at 5874.144 kb on + strand, within AO353_26815 at 5874.145 kb on - strand, within AO353_26815 at 5874.145 kb on - strand, within AO353_26815 at 5874.240 kb on + strand, within AO353_26815 at 5874.240 kb on + strand, within AO353_26815 at 5874.241 kb on - strand, within AO353_26815 at 5874.429 kb on + strand at 5874.450 kb on + strand at 5874.490 kb on + strand at 5874.491 kb on - strand at 5874.491 kb on - strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.541 kb on + strand at 5874.541 kb on + strand at 5874.541 kb on + strand at 5874.542 kb on - strand at 5874.542 kb on - strand at 5874.556 kb on + strand at 5874.557 kb on - strand at 5874.682 kb on + strand, within AO353_26820 at 5874.989 kb on + strand, within AO353_26820 at 5874.990 kb on - strand, within AO353_26820 at 5874.990 kb on - strand, within AO353_26820 at 5874.990 kb on - strand, within AO353_26820 at 5875.397 kb on - strand, within AO353_26820 at 5875.397 kb on - strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.594 kb on - strand, within AO353_26820 at 5875.594 kb on - strand, within AO353_26820 at 5875.594 kb on - strand, within AO353_26820 at 5875.594 kb on - strand, within AO353_26820 at 5875.594 kb on - strand, within AO353_26820 at 5875.601 kb on + strand, within AO353_26820 at 5875.602 kb on - strand, within AO353_26820 at 5875.602 kb on - strand, within AO353_26820 at 5875.661 kb on - strand, within AO353_26820 at 5875.822 kb on + strand at 5875.822 kb on + strand at 5875.822 kb on + strand at 5875.825 kb on + strand at 5875.826 kb on - strand at 5875.923 kb on + strand at 5875.923 kb on + strand at 5875.924 kb on - strand at 5875.924 kb on - strand at 5875.924 kb on - strand at 5875.994 kb on + strand at 5875.994 kb on + strand at 5875.994 kb on + strand at 5875.994 kb on + strand at 5875.995 kb on - strand at 5875.995 kb on - strand at 5875.995 kb on - strand at 5875.995 kb on - strand at 5875.995 kb on - strand at 5875.997 kb on + strand at 5875.998 kb on - strand at 5876.009 kb on + strand at 5876.009 kb on + strand at 5876.010 kb on - strand at 5876.176 kb on + strand, within AO353_26825 at 5876.176 kb on + strand at 5876.176 kb on + strand, within AO353_26825 at 5876.176 kb on + strand, within AO353_26825 at 5876.176 kb on + strand, within AO353_26825 at 5876.177 kb on - strand, within AO353_26825 at 5876.177 kb on - strand at 5876.307 kb on + strand, within AO353_26825 at 5876.326 kb on + strand, within AO353_26825 at 5876.326 kb on + strand, within AO353_26825 at 5876.326 kb on + strand, within AO353_26825 at 5876.327 kb on - strand at 5876.327 kb on - strand, within AO353_26825 at 5876.588 kb on + strand at 5876.663 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.692 kb on - strand at 5876.692 kb on - strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.775 kb on - strand at 5876.790 kb on + strand at 5876.790 kb on + strand at 5876.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,873,434 + -1.0 5,873,542 + -1.5 5,873,542 + +0.0 5,873,542 + -0.7 5,873,542 + +0.8 5,873,543 - +0.7 5,873,543 - +0.2 5,873,543 - +1.6 5,873,556 - -1.3 5,873,574 + +0.8 5,873,580 - +0.4 5,873,586 + +0.8 5,873,681 - -1.2 5,873,701 + -0.4 5,873,702 - -2.2 5,873,742 + -1.4 5,873,743 - +0.9 5,873,743 - +0.3 5,873,743 - -0.3 5,873,743 - -1.5 5,873,751 + -2.0 5,873,751 + -0.3 5,873,751 + +1.2 5,873,905 - AO353_26815 0.20 -2.4 5,874,063 + AO353_26815 0.43 -1.2 5,874,144 + AO353_26815 0.55 -2.2 5,874,144 + AO353_26815 0.55 -2.3 5,874,145 - AO353_26815 0.55 -3.0 5,874,145 - AO353_26815 0.55 +8.5 5,874,240 + AO353_26815 0.69 +1.1 5,874,240 + AO353_26815 0.69 +1.8 5,874,241 - AO353_26815 0.69 -0.6 5,874,429 + +1.6 5,874,450 + -0.2 5,874,490 + +2.5 5,874,491 - -0.8 5,874,491 - +1.8 5,874,538 + -1.1 5,874,538 + +1.1 5,874,538 + +2.2 5,874,538 + -0.3 5,874,538 + +0.9 5,874,538 + +2.2 5,874,538 + -1.5 5,874,538 + +1.3 5,874,538 + -1.0 5,874,538 + +1.4 5,874,539 - -2.0 5,874,539 - +3.1 5,874,539 - +0.6 5,874,539 - -0.1 5,874,539 - -0.8 5,874,539 - -1.0 5,874,539 - -0.0 5,874,539 - -0.4 5,874,539 - +0.6 5,874,539 - +0.2 5,874,539 - -0.5 5,874,539 - +0.2 5,874,539 - +0.6 5,874,541 + +0.8 5,874,541 + -0.2 5,874,541 + -0.8 5,874,542 - +0.0 5,874,542 - +0.7 5,874,556 + -1.4 5,874,557 - +0.4 5,874,682 + AO353_26820 0.18 -1.9 5,874,989 + AO353_26820 0.40 -1.0 5,874,990 - AO353_26820 0.40 -1.0 5,874,990 - AO353_26820 0.40 +2.5 5,874,990 - AO353_26820 0.40 -0.7 5,875,397 - AO353_26820 0.69 -2.1 5,875,397 - AO353_26820 0.69 -1.0 5,875,593 + AO353_26820 0.83 -1.0 5,875,593 + AO353_26820 0.83 -1.4 5,875,593 + AO353_26820 0.83 +1.4 5,875,593 + AO353_26820 0.83 -1.0 5,875,593 + AO353_26820 0.83 -0.4 5,875,593 + -0.4 5,875,593 + AO353_26820 0.83 +1.7 5,875,593 + AO353_26820 0.83 -0.7 5,875,594 - AO353_26820 0.83 -1.6 5,875,594 - AO353_26820 0.83 -2.2 5,875,594 - AO353_26820 0.83 -0.9 5,875,594 - AO353_26820 0.83 +0.9 5,875,594 - AO353_26820 0.83 -0.4 5,875,601 + AO353_26820 0.84 -2.0 5,875,602 - AO353_26820 0.84 -0.2 5,875,602 - AO353_26820 0.84 -1.1 5,875,661 - AO353_26820 0.88 +1.0 5,875,822 + +0.5 5,875,822 + +1.0 5,875,822 + +0.4 5,875,825 + +2.6 5,875,826 - +0.5 5,875,923 + +1.1 5,875,923 + -0.8 5,875,924 - -0.4 5,875,924 - +1.7 5,875,924 - -0.6 5,875,994 + +0.6 5,875,994 + -2.6 5,875,994 + +0.9 5,875,994 + -0.1 5,875,995 - -0.9 5,875,995 - -0.1 5,875,995 - +0.4 5,875,995 - +0.6 5,875,995 - +0.3 5,875,997 + +3.8 5,875,998 - -0.1 5,876,009 + +1.1 5,876,009 + -1.2 5,876,010 - -1.9 5,876,176 + AO353_26825 0.34 +2.0 5,876,176 + +3.8 5,876,176 + AO353_26825 0.34 +0.6 5,876,176 + AO353_26825 0.34 +2.0 5,876,176 + AO353_26825 0.34 +1.0 5,876,177 - AO353_26825 0.34 +1.2 5,876,177 - +0.2 5,876,307 + AO353_26825 0.54 +0.7 5,876,326 + AO353_26825 0.57 +0.2 5,876,326 + AO353_26825 0.57 -1.4 5,876,326 + AO353_26825 0.57 +1.3 5,876,327 - +1.0 5,876,327 - AO353_26825 0.57 +0.3 5,876,588 + +1.7 5,876,663 + -2.2 5,876,691 + +0.4 5,876,691 + -0.0 5,876,691 + -1.2 5,876,691 + -0.9 5,876,691 + -1.2 5,876,691 + +0.0 5,876,691 + -0.9 5,876,692 - -1.2 5,876,692 - -1.0 5,876,693 + +1.0 5,876,693 + +2.1 5,876,693 + +1.4 5,876,693 + +1.9 5,876,693 + -1.6 5,876,693 + -1.0 5,876,693 + -0.6 5,876,693 + -0.1 5,876,693 + +0.4 5,876,693 + -1.2 5,876,694 - -0.4 5,876,694 - -0.3 5,876,694 - +0.1 5,876,694 - +0.8 5,876,694 - +0.8 5,876,694 - +0.4 5,876,694 - -0.8 5,876,694 - +1.6 5,876,694 - -0.4 5,876,694 - +0.2 5,876,775 - -1.2 5,876,790 + +0.9 5,876,790 + -1.2 5,876,791 - -2.3
Or see this region's nucleotide sequence