Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26640

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26635 and AO353_26640 are separated by 1 nucleotidesAO353_26640 and AO353_26645 are separated by 0 nucleotides AO353_26635: AO353_26635 - branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data), at 5,831,537 to 5,832,772 _26635 AO353_26640: AO353_26640 - 2-oxoisovalerate dehydrogenase, at 5,832,774 to 5,833,832 _26640 AO353_26645: AO353_26645 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 5,833,833 to 5,835,110 _26645 Position (kb) 5832 5833 5834Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5831.855 kb on + strand, within AO353_26635at 5831.855 kb on + strand, within AO353_26635at 5831.855 kb on + strand, within AO353_26635at 5831.856 kb on - strand, within AO353_26635at 5831.856 kb on - strand, within AO353_26635at 5831.936 kb on + strand, within AO353_26635at 5831.936 kb on + strand, within AO353_26635at 5831.937 kb on - strand, within AO353_26635at 5831.979 kb on + strand, within AO353_26635at 5831.980 kb on - strand, within AO353_26635at 5832.047 kb on + strand, within AO353_26635at 5832.047 kb on + strand, within AO353_26635at 5832.047 kb on + strand, within AO353_26635at 5832.047 kb on + strand, within AO353_26635at 5832.047 kb on + strandat 5832.047 kb on + strand, within AO353_26635at 5832.047 kb on + strand, within AO353_26635at 5832.048 kb on - strand, within AO353_26635at 5832.048 kb on - strand, within AO353_26635at 5832.048 kb on - strand, within AO353_26635at 5832.105 kb on + strand, within AO353_26635at 5832.105 kb on + strand, within AO353_26635at 5832.105 kb on + strand, within AO353_26635at 5832.106 kb on - strand, within AO353_26635at 5832.106 kb on - strand, within AO353_26635at 5832.106 kb on - strand, within AO353_26635at 5832.106 kb on - strand, within AO353_26635at 5832.230 kb on + strand, within AO353_26635at 5832.387 kb on - strand, within AO353_26635at 5832.387 kb on - strand, within AO353_26635at 5832.387 kb on - strand, within AO353_26635at 5832.387 kb on - strand, within AO353_26635at 5832.459 kb on - strand, within AO353_26635at 5832.500 kb on + strand, within AO353_26635at 5832.500 kb on + strand, within AO353_26635at 5832.500 kb on + strand, within AO353_26635at 5832.501 kb on - strand, within AO353_26635at 5832.663 kb on - strandat 5832.663 kb on - strandat 5832.719 kb on + strandat 5832.719 kb on + strandat 5832.719 kb on + strandat 5832.720 kb on - strandat 5832.720 kb on - strandat 5832.720 kb on - strandat 5832.722 kb on - strandat 5832.722 kb on - strandat 5832.722 kb on - strandat 5832.722 kb on - strandat 5832.791 kb on + strandat 5832.792 kb on - strandat 5832.792 kb on - strandat 5832.792 kb on - strandat 5832.792 kb on - strandat 5832.792 kb on - strandat 5832.792 kb on - strandat 5832.792 kb on - strandat 5832.792 kb on - strandat 5832.794 kb on + strandat 5832.960 kb on + strand, within AO353_26640at 5832.961 kb on - strand, within AO353_26640at 5833.043 kb on - strand, within AO353_26640at 5833.074 kb on + strand, within AO353_26640at 5833.074 kb on + strand, within AO353_26640at 5833.075 kb on - strand, within AO353_26640at 5833.188 kb on + strand, within AO353_26640at 5833.189 kb on - strand, within AO353_26640at 5833.347 kb on + strand, within AO353_26640at 5833.431 kb on + strand, within AO353_26640at 5833.431 kb on + strand, within AO353_26640at 5833.431 kb on + strand, within AO353_26640at 5833.431 kb on + strand, within AO353_26640at 5833.431 kb on + strand, within AO353_26640at 5833.432 kb on - strand, within AO353_26640at 5833.432 kb on - strand, within AO353_26640at 5833.432 kb on - strand, within AO353_26640at 5833.432 kb on - strand, within AO353_26640at 5833.495 kb on - strand, within AO353_26640at 5833.495 kb on - strand, within AO353_26640at 5833.495 kb on - strand, within AO353_26640at 5833.509 kb on + strand, within AO353_26640at 5833.509 kb on + strand, within AO353_26640at 5833.509 kb on + strand, within AO353_26640at 5833.509 kb on + strand, within AO353_26640at 5833.510 kb on - strand, within AO353_26640at 5833.510 kb on - strand, within AO353_26640at 5833.510 kb on - strand, within AO353_26640at 5833.745 kb on + strandat 5833.777 kb on - strandat 5833.777 kb on - strandat 5833.851 kb on - strandat 5834.061 kb on - strand, within AO353_26645at 5834.355 kb on + strand, within AO353_26645at 5834.355 kb on + strand, within AO353_26645at 5834.356 kb on - strand, within AO353_26645at 5834.356 kb on - strand, within AO353_26645at 5834.502 kb on + strand, within AO353_26645at 5834.503 kb on - strand, within AO353_26645at 5834.503 kb on - strand, within AO353_26645

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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5,831,855 + AO353_26635 0.26 -0.1
5,831,855 + AO353_26635 0.26 -1.1
5,831,855 + AO353_26635 0.26 -1.1
5,831,856 - AO353_26635 0.26 -1.4
5,831,856 - AO353_26635 0.26 -0.8
5,831,936 + AO353_26635 0.32 -0.5
5,831,936 + AO353_26635 0.32 -0.4
5,831,937 - AO353_26635 0.32 -0.4
5,831,979 + AO353_26635 0.36 +2.3
5,831,980 - AO353_26635 0.36 -2.4
5,832,047 + AO353_26635 0.41 +0.8
5,832,047 + AO353_26635 0.41 -2.0
5,832,047 + AO353_26635 0.41 -1.1
5,832,047 + AO353_26635 0.41 +0.3
5,832,047 + -0.6
5,832,047 + AO353_26635 0.41 -0.6
5,832,047 + AO353_26635 0.41 +0.8
5,832,048 - AO353_26635 0.41 -1.2
5,832,048 - AO353_26635 0.41 -0.1
5,832,048 - AO353_26635 0.41 +0.4
5,832,105 + AO353_26635 0.46 -1.0
5,832,105 + AO353_26635 0.46 -2.0
5,832,105 + AO353_26635 0.46 -0.0
5,832,106 - AO353_26635 0.46 -1.0
5,832,106 - AO353_26635 0.46 +0.0
5,832,106 - AO353_26635 0.46 +0.1
5,832,106 - AO353_26635 0.46 -0.4
5,832,230 + AO353_26635 0.56 +0.8
5,832,387 - AO353_26635 0.69 -0.1
5,832,387 - AO353_26635 0.69 -0.1
5,832,387 - AO353_26635 0.69 -1.8
5,832,387 - AO353_26635 0.69 -1.2
5,832,459 - AO353_26635 0.75 -1.8
5,832,500 + AO353_26635 0.78 +2.2
5,832,500 + AO353_26635 0.78 -0.6
5,832,500 + AO353_26635 0.78 +0.9
5,832,501 - AO353_26635 0.78 -1.6
5,832,663 - -0.4
5,832,663 - -1.0
5,832,719 + -0.4
5,832,719 + -1.2
5,832,719 + -1.6
5,832,720 - -1.1
5,832,720 - -0.5
5,832,720 - -0.4
5,832,722 - -2.0
5,832,722 - -1.9
5,832,722 - -1.8
5,832,722 - -1.7
5,832,791 + +0.9
5,832,792 - -0.4
5,832,792 - -0.4
5,832,792 - +1.3
5,832,792 - -1.6
5,832,792 - -1.9
5,832,792 - -1.4
5,832,792 - +1.8
5,832,792 - -1.6
5,832,794 + +0.6
5,832,960 + AO353_26640 0.18 -1.1
5,832,961 - AO353_26640 0.18 -0.1
5,833,043 - AO353_26640 0.25 +0.0
5,833,074 + AO353_26640 0.28 -1.4
5,833,074 + AO353_26640 0.28 -0.7
5,833,075 - AO353_26640 0.28 -2.0
5,833,188 + AO353_26640 0.39 -1.0
5,833,189 - AO353_26640 0.39 -1.1
5,833,347 + AO353_26640 0.54 -0.4
5,833,431 + AO353_26640 0.62 -0.9
5,833,431 + AO353_26640 0.62 +0.5
5,833,431 + AO353_26640 0.62 -1.1
5,833,431 + AO353_26640 0.62 -1.4
5,833,431 + AO353_26640 0.62 -1.9
5,833,432 - AO353_26640 0.62 -1.4
5,833,432 - AO353_26640 0.62 -1.8
5,833,432 - AO353_26640 0.62 -0.7
5,833,432 - AO353_26640 0.62 -1.1
5,833,495 - AO353_26640 0.68 -1.2
5,833,495 - AO353_26640 0.68 +0.4
5,833,495 - AO353_26640 0.68 -0.6
5,833,509 + AO353_26640 0.69 -0.3
5,833,509 + AO353_26640 0.69 -2.1
5,833,509 + AO353_26640 0.69 -0.6
5,833,509 + AO353_26640 0.69 -1.6
5,833,510 - AO353_26640 0.69 -0.1
5,833,510 - AO353_26640 0.69 -2.0
5,833,510 - AO353_26640 0.69 +0.3
5,833,745 + -2.2
5,833,777 - +0.2
5,833,777 - -0.8
5,833,851 - -0.7
5,834,061 - AO353_26645 0.18 +0.1
5,834,355 + AO353_26645 0.41 -1.1
5,834,355 + AO353_26645 0.41 -0.2
5,834,356 - AO353_26645 0.41 -0.9
5,834,356 - AO353_26645 0.41 -0.4
5,834,502 + AO353_26645 0.52 +2.2
5,834,503 - AO353_26645 0.52 +0.3
5,834,503 - AO353_26645 0.52 -3.2

Or see this region's nucleotide sequence