Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24905

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24900 and AO353_24905 are separated by 3 nucleotidesAO353_24905 and AO353_24910 are separated by 22 nucleotides AO353_24900: AO353_24900 - alcohol dehydrogenase, at 5,491,685 to 5,492,845 _24900 AO353_24905: AO353_24905 - aldehyde dehydrogenase, at 5,492,849 to 5,494,240 _24905 AO353_24910: AO353_24910 - glutamine synthetase, at 5,494,263 to 5,495,636 _24910 Position (kb) 5492 5493 5494 5495Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 5491.914 kb on + strand, within AO353_24900at 5491.914 kb on + strand, within AO353_24900at 5491.914 kb on + strandat 5491.915 kb on - strand, within AO353_24900at 5491.915 kb on - strand, within AO353_24900at 5491.971 kb on + strand, within AO353_24900at 5491.971 kb on + strand, within AO353_24900at 5491.971 kb on + strand, within AO353_24900at 5491.972 kb on - strand, within AO353_24900at 5491.972 kb on - strand, within AO353_24900at 5491.972 kb on - strand, within AO353_24900at 5491.972 kb on - strand, within AO353_24900at 5491.972 kb on - strand, within AO353_24900at 5491.972 kb on - strand, within AO353_24900at 5491.972 kb on - strand, within AO353_24900at 5491.972 kb on - strand, within AO353_24900at 5491.972 kb on - strand, within AO353_24900at 5492.014 kb on - strand, within AO353_24900at 5492.014 kb on - strand, within AO353_24900at 5492.144 kb on + strand, within AO353_24900at 5492.353 kb on + strand, within AO353_24900at 5492.354 kb on - strand, within AO353_24900at 5492.354 kb on - strand, within AO353_24900at 5492.354 kb on - strand, within AO353_24900at 5492.536 kb on + strand, within AO353_24900at 5492.753 kb on - strandat 5492.821 kb on - strandat 5492.850 kb on + strandat 5492.850 kb on + strandat 5492.851 kb on - strandat 5492.851 kb on - strandat 5492.851 kb on - strandat 5492.851 kb on - strandat 5492.851 kb on - strandat 5493.019 kb on + strand, within AO353_24905at 5493.185 kb on + strand, within AO353_24905at 5493.185 kb on + strand, within AO353_24905at 5493.205 kb on - strand, within AO353_24905at 5493.367 kb on - strand, within AO353_24905at 5493.367 kb on - strand, within AO353_24905at 5493.367 kb on - strand, within AO353_24905at 5493.426 kb on + strand, within AO353_24905at 5493.426 kb on + strand, within AO353_24905at 5493.426 kb on + strand, within AO353_24905at 5493.427 kb on - strand, within AO353_24905at 5493.427 kb on - strand, within AO353_24905at 5493.525 kb on + strand, within AO353_24905at 5493.526 kb on - strand, within AO353_24905at 5493.666 kb on + strand, within AO353_24905at 5493.666 kb on + strand, within AO353_24905at 5493.666 kb on + strand, within AO353_24905at 5493.666 kb on + strand, within AO353_24905at 5493.666 kb on + strand, within AO353_24905at 5493.666 kb on + strand, within AO353_24905at 5493.667 kb on - strand, within AO353_24905at 5493.667 kb on - strand, within AO353_24905at 5493.667 kb on - strandat 5493.667 kb on - strand, within AO353_24905at 5493.667 kb on - strand, within AO353_24905at 5493.667 kb on - strand, within AO353_24905at 5493.667 kb on - strand, within AO353_24905at 5493.667 kb on - strand, within AO353_24905at 5493.808 kb on + strand, within AO353_24905at 5493.809 kb on - strand, within AO353_24905at 5493.809 kb on - strand, within AO353_24905at 5493.832 kb on - strand, within AO353_24905at 5494.040 kb on + strand, within AO353_24905at 5494.040 kb on + strand, within AO353_24905at 5494.041 kb on - strand, within AO353_24905at 5494.041 kb on - strand, within AO353_24905at 5494.041 kb on - strand, within AO353_24905at 5494.253 kb on - strandat 5494.349 kb on - strandat 5494.459 kb on + strand, within AO353_24910at 5494.459 kb on + strand, within AO353_24910at 5494.459 kb on + strand, within AO353_24910at 5494.460 kb on - strand, within AO353_24910at 5494.546 kb on + strand, within AO353_24910at 5494.690 kb on + strand, within AO353_24910at 5494.691 kb on - strand, within AO353_24910at 5494.691 kb on - strand, within AO353_24910at 5494.702 kb on + strand, within AO353_24910at 5494.702 kb on + strand, within AO353_24910at 5494.702 kb on + strand, within AO353_24910at 5494.702 kb on + strand, within AO353_24910at 5494.703 kb on - strand, within AO353_24910at 5494.703 kb on - strand, within AO353_24910at 5494.735 kb on + strand, within AO353_24910at 5494.735 kb on + strand, within AO353_24910at 5494.735 kb on + strand, within AO353_24910at 5494.735 kb on + strand, within AO353_24910at 5494.735 kb on + strand, within AO353_24910at 5494.739 kb on + strand, within AO353_24910at 5494.739 kb on + strand, within AO353_24910at 5494.739 kb on + strand, within AO353_24910at 5494.739 kb on + strand, within AO353_24910at 5494.739 kb on + strand, within AO353_24910at 5494.740 kb on - strand, within AO353_24910at 5494.740 kb on - strand, within AO353_24910at 5494.873 kb on + strand, within AO353_24910at 5494.874 kb on - strand, within AO353_24910at 5495.113 kb on + strand, within AO353_24910at 5495.113 kb on + strand, within AO353_24910at 5495.114 kb on - strand, within AO353_24910at 5495.114 kb on - strand, within AO353_24910at 5495.114 kb on - strand, within AO353_24910at 5495.125 kb on + strand, within AO353_24910at 5495.125 kb on + strand, within AO353_24910at 5495.125 kb on + strand, within AO353_24910at 5495.126 kb on - strand, within AO353_24910at 5495.153 kb on - strand, within AO353_24910at 5495.153 kb on - strand, within AO353_24910at 5495.153 kb on - strand, within AO353_24910at 5495.153 kb on - strand, within AO353_24910at 5495.176 kb on + strand, within AO353_24910at 5495.177 kb on - strand, within AO353_24910at 5495.177 kb on - strand, within AO353_24910at 5495.194 kb on + strand, within AO353_24910at 5495.194 kb on + strand, within AO353_24910at 5495.194 kb on + strand, within AO353_24910at 5495.194 kb on + strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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5,491,914 + AO353_24900 0.20 +0.8
5,491,914 + AO353_24900 0.20 +1.9
5,491,914 + -0.5
5,491,915 - AO353_24900 0.20 -0.3
5,491,915 - AO353_24900 0.20 -0.7
5,491,971 + AO353_24900 0.25 -1.8
5,491,971 + AO353_24900 0.25 +0.6
5,491,971 + AO353_24900 0.25 -1.5
5,491,972 - AO353_24900 0.25 -2.0
5,491,972 - AO353_24900 0.25 -0.8
5,491,972 - AO353_24900 0.25 +2.4
5,491,972 - AO353_24900 0.25 +2.1
5,491,972 - AO353_24900 0.25 -0.0
5,491,972 - AO353_24900 0.25 +0.0
5,491,972 - AO353_24900 0.25 +3.0
5,491,972 - AO353_24900 0.25 +1.2
5,491,972 - AO353_24900 0.25 -1.0
5,492,014 - AO353_24900 0.28 -0.7
5,492,014 - AO353_24900 0.28 +1.0
5,492,144 + AO353_24900 0.40 +2.4
5,492,353 + AO353_24900 0.58 -1.2
5,492,354 - AO353_24900 0.58 +1.1
5,492,354 - AO353_24900 0.58 -1.2
5,492,354 - AO353_24900 0.58 -0.1
5,492,536 + AO353_24900 0.73 +0.6
5,492,753 - +0.1
5,492,821 - +1.5
5,492,850 + -0.2
5,492,850 + +4.1
5,492,851 - +2.0
5,492,851 - -1.2
5,492,851 - +0.8
5,492,851 - +0.9
5,492,851 - +2.5
5,493,019 + AO353_24905 0.12 -0.6
5,493,185 + AO353_24905 0.24 -1.5
5,493,185 + AO353_24905 0.24 +0.4
5,493,205 - AO353_24905 0.26 -1.0
5,493,367 - AO353_24905 0.37 +0.1
5,493,367 - AO353_24905 0.37 -0.0
5,493,367 - AO353_24905 0.37 +1.0
5,493,426 + AO353_24905 0.41 +0.3
5,493,426 + AO353_24905 0.41 +1.5
5,493,426 + AO353_24905 0.41 -1.7
5,493,427 - AO353_24905 0.42 +0.1
5,493,427 - AO353_24905 0.42 +0.1
5,493,525 + AO353_24905 0.49 +1.4
5,493,526 - AO353_24905 0.49 -2.6
5,493,666 + AO353_24905 0.59 +0.1
5,493,666 + AO353_24905 0.59 +0.1
5,493,666 + AO353_24905 0.59 -0.5
5,493,666 + AO353_24905 0.59 -0.5
5,493,666 + AO353_24905 0.59 -0.2
5,493,666 + AO353_24905 0.59 -1.3
5,493,667 - AO353_24905 0.59 +1.4
5,493,667 - AO353_24905 0.59 -1.1
5,493,667 - +2.1
5,493,667 - AO353_24905 0.59 +0.0
5,493,667 - AO353_24905 0.59 -1.5
5,493,667 - AO353_24905 0.59 +0.7
5,493,667 - AO353_24905 0.59 +1.2
5,493,667 - AO353_24905 0.59 +0.7
5,493,808 + AO353_24905 0.69 -1.4
5,493,809 - AO353_24905 0.69 -1.9
5,493,809 - AO353_24905 0.69 -1.2
5,493,832 - AO353_24905 0.71 +0.7
5,494,040 + AO353_24905 0.86 -0.5
5,494,040 + AO353_24905 0.86 -0.9
5,494,041 - AO353_24905 0.86 -1.6
5,494,041 - AO353_24905 0.86 +0.3
5,494,041 - AO353_24905 0.86 -0.9
5,494,253 - -1.5
5,494,349 - -1.3
5,494,459 + AO353_24910 0.14 +6.0
5,494,459 + AO353_24910 0.14 +0.1
5,494,459 + AO353_24910 0.14 +1.8
5,494,460 - AO353_24910 0.14 +1.2
5,494,546 + AO353_24910 0.21 +3.9
5,494,690 + AO353_24910 0.31 -1.5
5,494,691 - AO353_24910 0.31 -0.7
5,494,691 - AO353_24910 0.31 -0.7
5,494,702 + AO353_24910 0.32 -0.3
5,494,702 + AO353_24910 0.32 +0.5
5,494,702 + AO353_24910 0.32 +0.7
5,494,702 + AO353_24910 0.32 +0.8
5,494,703 - AO353_24910 0.32 +1.7
5,494,703 - AO353_24910 0.32 -0.9
5,494,735 + AO353_24910 0.34 -2.3
5,494,735 + AO353_24910 0.34 +1.7
5,494,735 + AO353_24910 0.34 -1.8
5,494,735 + AO353_24910 0.34 +1.3
5,494,735 + AO353_24910 0.34 -0.7
5,494,739 + AO353_24910 0.35 -0.2
5,494,739 + AO353_24910 0.35 +1.5
5,494,739 + AO353_24910 0.35 +2.6
5,494,739 + AO353_24910 0.35 +3.4
5,494,739 + AO353_24910 0.35 -1.7
5,494,740 - AO353_24910 0.35 +2.9
5,494,740 - AO353_24910 0.35 -1.3
5,494,873 + AO353_24910 0.44 +2.4
5,494,874 - AO353_24910 0.44 +0.1
5,495,113 + AO353_24910 0.62 -0.7
5,495,113 + AO353_24910 0.62 -0.1
5,495,114 - AO353_24910 0.62 -1.0
5,495,114 - AO353_24910 0.62 -2.1
5,495,114 - AO353_24910 0.62 +1.3
5,495,125 + AO353_24910 0.63 -0.6
5,495,125 + AO353_24910 0.63 +0.1
5,495,125 + AO353_24910 0.63 -1.7
5,495,126 - AO353_24910 0.63 +1.2
5,495,153 - AO353_24910 0.65 +0.7
5,495,153 - AO353_24910 0.65 -0.5
5,495,153 - AO353_24910 0.65 +3.1
5,495,153 - AO353_24910 0.65 -0.6
5,495,176 + AO353_24910 0.66 -0.7
5,495,177 - AO353_24910 0.67 -0.7
5,495,177 - AO353_24910 0.67 +0.4
5,495,194 + AO353_24910 0.68 -0.9
5,495,194 + AO353_24910 0.68 -0.4
5,495,194 + AO353_24910 0.68 -0.3
5,495,194 + AO353_24910 0.68 -0.0
5,495,195 - AO353_24910 0.68 -0.5
5,495,195 - AO353_24910 0.68 +1.3
5,495,195 - AO353_24910 0.68 +1.6
5,495,195 - AO353_24910 0.68 +1.1
5,495,195 - AO353_24910 0.68 -0.7
5,495,195 - AO353_24910 0.68 -1.0
5,495,195 - AO353_24910 0.68 -0.0
5,495,195 - AO353_24910 0.68 +0.9

Or see this region's nucleotide sequence