Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22695 and AO353_22700 are separated by 47 nucleotides AO353_22700 and AO353_22705 overlap by 1 nucleotides AO353_22705 and AO353_22710 are separated by 7 nucleotides
AO353_22695: AO353_22695 - LysR family transcriptional regulator, at 4,969,703 to 4,970,620
_22695
AO353_22700: AO353_22700 - LexA family transcriptional regulator, at 4,970,668 to 4,971,285
_22700
AO353_22705: AO353_22705 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 4,971,285 to 4,971,902
_22705
AO353_22710: AO353_22710 - DNA repair nucleotidyltransferase, at 4,971,910 to 4,973,325
_22710
Position (kb)
4970
4971
4972 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4969.872 kb on + strand, within AO353_22695 at 4969.872 kb on + strand, within AO353_22695 at 4969.872 kb on + strand, within AO353_22695 at 4969.895 kb on + strand, within AO353_22695 at 4969.895 kb on + strand, within AO353_22695 at 4970.214 kb on - strand, within AO353_22695 at 4970.276 kb on + strand, within AO353_22695 at 4970.277 kb on - strand, within AO353_22695 at 4970.277 kb on - strand, within AO353_22695 at 4970.277 kb on - strand, within AO353_22695 at 4970.277 kb on - strand, within AO353_22695 at 4970.277 kb on - strand, within AO353_22695 at 4970.378 kb on + strand, within AO353_22695 at 4970.379 kb on - strand, within AO353_22695 at 4970.379 kb on - strand, within AO353_22695 at 4970.379 kb on - strand, within AO353_22695 at 4970.490 kb on - strand, within AO353_22695 at 4971.019 kb on + strand, within AO353_22700 at 4971.208 kb on + strand, within AO353_22700 at 4971.209 kb on - strand, within AO353_22700 at 4971.209 kb on - strand, within AO353_22700 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.544 kb on - strand, within AO353_22705 at 4971.779 kb on + strand, within AO353_22705 at 4971.835 kb on + strand, within AO353_22705 at 4971.924 kb on + strand at 4971.924 kb on + strand at 4971.925 kb on - strand at 4971.925 kb on - strand at 4971.925 kb on - strand at 4972.123 kb on + strand, within AO353_22710 at 4972.123 kb on + strand, within AO353_22710 at 4972.123 kb on + strand, within AO353_22710
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,969,872 + AO353_22695 0.18 -1.1 4,969,872 + AO353_22695 0.18 +0.8 4,969,872 + AO353_22695 0.18 +1.9 4,969,895 + AO353_22695 0.21 -1.5 4,969,895 + AO353_22695 0.21 -0.2 4,970,214 - AO353_22695 0.56 -1.9 4,970,276 + AO353_22695 0.62 -0.4 4,970,277 - AO353_22695 0.63 +0.6 4,970,277 - AO353_22695 0.63 +1.6 4,970,277 - AO353_22695 0.63 +1.4 4,970,277 - AO353_22695 0.63 +1.1 4,970,277 - AO353_22695 0.63 -0.1 4,970,378 + AO353_22695 0.74 -1.0 4,970,379 - AO353_22695 0.74 -1.2 4,970,379 - AO353_22695 0.74 +1.6 4,970,379 - AO353_22695 0.74 +2.4 4,970,490 - AO353_22695 0.86 -1.8 4,971,019 + AO353_22700 0.57 -1.8 4,971,208 + AO353_22700 0.87 -1.5 4,971,209 - AO353_22700 0.88 -0.0 4,971,209 - AO353_22700 0.88 -1.3 4,971,543 + AO353_22705 0.42 +0.8 4,971,543 + AO353_22705 0.42 +0.0 4,971,543 + AO353_22705 0.42 +1.0 4,971,543 + AO353_22705 0.42 -2.1 4,971,543 + AO353_22705 0.42 +1.3 4,971,543 + AO353_22705 0.42 -0.4 4,971,543 + AO353_22705 0.42 +0.8 4,971,544 - AO353_22705 0.42 -0.6 4,971,779 + AO353_22705 0.80 +1.0 4,971,835 + AO353_22705 0.89 -0.3 4,971,924 + +1.2 4,971,924 + -1.6 4,971,925 - -0.2 4,971,925 - +0.3 4,971,925 - +0.2 4,972,123 + AO353_22710 0.15 -2.6 4,972,123 + AO353_22710 0.15 +1.2 4,972,123 + AO353_22710 0.15 -1.1
Or see this region's nucleotide sequence