Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16495

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16490 and AO353_16495 are separated by 54 nucleotidesAO353_16495 and AO353_16500 are separated by 74 nucleotides AO353_16490: AO353_16490 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 3,660,653 to 3,661,843 _16490 AO353_16495: AO353_16495 - zinc metallopeptidase RseP, at 3,661,898 to 3,663,250 _16495 AO353_16500: AO353_16500 - outer membrane protein assembly factor BamA, at 3,663,325 to 3,665,724 _16500 Position (kb) 3661 3662 3663 3664Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3661.842 kb on - strandat 3661.878 kb on + strandat 3661.879 kb on - strandat 3661.895 kb on + strandat 3661.895 kb on + strandat 3661.895 kb on + strandat 3661.895 kb on + strandat 3661.896 kb on - strandat 3661.896 kb on - strandat 3661.896 kb on - strandat 3661.896 kb on - strandat 3661.910 kb on + strandat 3661.910 kb on + strandat 3661.910 kb on + strandat 3661.910 kb on + strandat 3661.910 kb on + strandat 3661.910 kb on + strandat 3661.911 kb on - strandat 3661.911 kb on - strandat 3661.911 kb on - strandat 3661.911 kb on - strandat 3661.911 kb on - strandat 3661.911 kb on - strandat 3661.911 kb on - strandat 3661.912 kb on + strandat 3661.912 kb on + strandat 3661.912 kb on + strandat 3661.912 kb on + strandat 3661.912 kb on + strandat 3661.912 kb on + strandat 3661.912 kb on + strandat 3661.912 kb on + strandat 3661.913 kb on - strandat 3661.913 kb on - strandat 3661.913 kb on - strandat 3662.099 kb on + strand, within AO353_16495at 3662.099 kb on + strand, within AO353_16495at 3662.196 kb on + strand, within AO353_16495at 3662.196 kb on + strand, within AO353_16495at 3662.197 kb on - strand, within AO353_16495at 3662.197 kb on - strand, within AO353_16495at 3662.197 kb on - strand, within AO353_16495at 3662.209 kb on + strand, within AO353_16495at 3662.706 kb on - strand, within AO353_16495at 3662.722 kb on + strand, within AO353_16495at 3662.787 kb on + strand, within AO353_16495at 3662.787 kb on + strand, within AO353_16495at 3662.787 kb on + strand, within AO353_16495at 3662.787 kb on + strand, within AO353_16495at 3662.788 kb on - strand, within AO353_16495at 3662.798 kb on + strand, within AO353_16495at 3663.050 kb on + strand, within AO353_16495at 3663.050 kb on + strand, within AO353_16495at 3663.050 kb on + strand, within AO353_16495at 3663.050 kb on + strand, within AO353_16495at 3663.058 kb on + strand, within AO353_16495at 3663.061 kb on + strand, within AO353_16495at 3663.061 kb on + strand, within AO353_16495at 3663.061 kb on + strand, within AO353_16495at 3663.061 kb on + strand, within AO353_16495at 3663.061 kb on + strand, within AO353_16495at 3663.122 kb on + strandat 3663.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,661,842 - +0.1
3,661,878 + -2.5
3,661,879 - +0.4
3,661,895 + +0.3
3,661,895 + -1.7
3,661,895 + +0.3
3,661,895 + -2.4
3,661,896 - +0.1
3,661,896 - -1.5
3,661,896 - -0.1
3,661,896 - -1.3
3,661,910 + -0.9
3,661,910 + +0.3
3,661,910 + +0.7
3,661,910 + -1.8
3,661,910 + +2.0
3,661,910 + +0.3
3,661,911 - +1.1
3,661,911 - -1.3
3,661,911 - -1.3
3,661,911 - -1.3
3,661,911 - -0.5
3,661,911 - -0.7
3,661,911 - -1.1
3,661,912 + -0.3
3,661,912 + -1.5
3,661,912 + +1.2
3,661,912 + +0.3
3,661,912 + -0.7
3,661,912 + -0.1
3,661,912 + +1.1
3,661,912 + -1.7
3,661,913 - +2.8
3,661,913 - +0.5
3,661,913 - -0.7
3,662,099 + AO353_16495 0.15 +1.1
3,662,099 + AO353_16495 0.15 -1.9
3,662,196 + AO353_16495 0.22 -1.1
3,662,196 + AO353_16495 0.22 +0.7
3,662,197 - AO353_16495 0.22 -2.0
3,662,197 - AO353_16495 0.22 -0.1
3,662,197 - AO353_16495 0.22 +1.0
3,662,209 + AO353_16495 0.23 +1.5
3,662,706 - AO353_16495 0.60 -1.5
3,662,722 + AO353_16495 0.61 -1.8
3,662,787 + AO353_16495 0.66 -0.7
3,662,787 + AO353_16495 0.66 -1.4
3,662,787 + AO353_16495 0.66 -1.1
3,662,787 + AO353_16495 0.66 -0.7
3,662,788 - AO353_16495 0.66 -1.1
3,662,798 + AO353_16495 0.67 -0.7
3,663,050 + AO353_16495 0.85 -2.3
3,663,050 + AO353_16495 0.85 -0.8
3,663,050 + AO353_16495 0.85 +0.1
3,663,050 + AO353_16495 0.85 -2.9
3,663,058 + AO353_16495 0.86 -1.0
3,663,061 + AO353_16495 0.86 -0.9
3,663,061 + AO353_16495 0.86 -1.3
3,663,061 + AO353_16495 0.86 +0.3
3,663,061 + AO353_16495 0.86 -0.1
3,663,061 + AO353_16495 0.86 +2.7
3,663,122 + -2.0
3,663,122 + -2.1

Or see this region's nucleotide sequence