Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16490 and AO353_16495 are separated by 54 nucleotides AO353_16495 and AO353_16500 are separated by 74 nucleotides
AO353_16490: AO353_16490 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 3,660,653 to 3,661,843
_16490
AO353_16495: AO353_16495 - zinc metallopeptidase RseP, at 3,661,898 to 3,663,250
_16495
AO353_16500: AO353_16500 - outer membrane protein assembly factor BamA, at 3,663,325 to 3,665,724
_16500
Position (kb)
3661
3662
3663
3664 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3661.842 kb on - strand at 3661.878 kb on + strand at 3661.879 kb on - strand at 3661.895 kb on + strand at 3661.895 kb on + strand at 3661.895 kb on + strand at 3661.895 kb on + strand at 3661.896 kb on - strand at 3661.896 kb on - strand at 3661.896 kb on - strand at 3661.896 kb on - strand at 3661.910 kb on + strand at 3661.910 kb on + strand at 3661.910 kb on + strand at 3661.910 kb on + strand at 3661.910 kb on + strand at 3661.910 kb on + strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.913 kb on - strand at 3661.913 kb on - strand at 3661.913 kb on - strand at 3662.099 kb on + strand, within AO353_16495 at 3662.099 kb on + strand, within AO353_16495 at 3662.196 kb on + strand, within AO353_16495 at 3662.196 kb on + strand, within AO353_16495 at 3662.197 kb on - strand, within AO353_16495 at 3662.197 kb on - strand, within AO353_16495 at 3662.197 kb on - strand, within AO353_16495 at 3662.209 kb on + strand, within AO353_16495 at 3662.706 kb on - strand, within AO353_16495 at 3662.722 kb on + strand, within AO353_16495 at 3662.787 kb on + strand, within AO353_16495 at 3662.787 kb on + strand, within AO353_16495 at 3662.787 kb on + strand, within AO353_16495 at 3662.787 kb on + strand, within AO353_16495 at 3662.788 kb on - strand, within AO353_16495 at 3662.798 kb on + strand, within AO353_16495 at 3663.050 kb on + strand, within AO353_16495 at 3663.050 kb on + strand, within AO353_16495 at 3663.050 kb on + strand, within AO353_16495 at 3663.050 kb on + strand, within AO353_16495 at 3663.058 kb on + strand, within AO353_16495 at 3663.061 kb on + strand, within AO353_16495 at 3663.061 kb on + strand, within AO353_16495 at 3663.061 kb on + strand, within AO353_16495 at 3663.061 kb on + strand, within AO353_16495 at 3663.061 kb on + strand, within AO353_16495 at 3663.122 kb on + strand at 3663.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 3,661,842 - +0.1 3,661,878 + -2.5 3,661,879 - +0.4 3,661,895 + +0.3 3,661,895 + -1.7 3,661,895 + +0.3 3,661,895 + -2.4 3,661,896 - +0.1 3,661,896 - -1.5 3,661,896 - -0.1 3,661,896 - -1.3 3,661,910 + -0.9 3,661,910 + +0.3 3,661,910 + +0.7 3,661,910 + -1.8 3,661,910 + +2.0 3,661,910 + +0.3 3,661,911 - +1.1 3,661,911 - -1.3 3,661,911 - -1.3 3,661,911 - -1.3 3,661,911 - -0.5 3,661,911 - -0.7 3,661,911 - -1.1 3,661,912 + -0.3 3,661,912 + -1.5 3,661,912 + +1.2 3,661,912 + +0.3 3,661,912 + -0.7 3,661,912 + -0.1 3,661,912 + +1.1 3,661,912 + -1.7 3,661,913 - +2.8 3,661,913 - +0.5 3,661,913 - -0.7 3,662,099 + AO353_16495 0.15 +1.1 3,662,099 + AO353_16495 0.15 -1.9 3,662,196 + AO353_16495 0.22 -1.1 3,662,196 + AO353_16495 0.22 +0.7 3,662,197 - AO353_16495 0.22 -2.0 3,662,197 - AO353_16495 0.22 -0.1 3,662,197 - AO353_16495 0.22 +1.0 3,662,209 + AO353_16495 0.23 +1.5 3,662,706 - AO353_16495 0.60 -1.5 3,662,722 + AO353_16495 0.61 -1.8 3,662,787 + AO353_16495 0.66 -0.7 3,662,787 + AO353_16495 0.66 -1.4 3,662,787 + AO353_16495 0.66 -1.1 3,662,787 + AO353_16495 0.66 -0.7 3,662,788 - AO353_16495 0.66 -1.1 3,662,798 + AO353_16495 0.67 -0.7 3,663,050 + AO353_16495 0.85 -2.3 3,663,050 + AO353_16495 0.85 -0.8 3,663,050 + AO353_16495 0.85 +0.1 3,663,050 + AO353_16495 0.85 -2.9 3,663,058 + AO353_16495 0.86 -1.0 3,663,061 + AO353_16495 0.86 -0.9 3,663,061 + AO353_16495 0.86 -1.3 3,663,061 + AO353_16495 0.86 +0.3 3,663,061 + AO353_16495 0.86 -0.1 3,663,061 + AO353_16495 0.86 +2.7 3,663,122 + -2.0 3,663,122 + -2.1
Or see this region's nucleotide sequence