Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15510

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15505 and AO353_15510 are separated by 213 nucleotidesAO353_15510 and AO353_15515 are separated by 131 nucleotides AO353_15505: AO353_15505 - LysR family transcriptional regulator, at 3,425,955 to 3,426,902 _15505 AO353_15510: AO353_15510 - ribosomal subunit interface protein, at 3,427,116 to 3,427,523 _15510 AO353_15515: AO353_15515 - penicillin-binding protein 1C, at 3,427,655 to 3,429,970 _15515 Position (kb) 3427 3428Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3426.179 kb on + strand, within AO353_15505at 3426.179 kb on + strand, within AO353_15505at 3426.180 kb on - strand, within AO353_15505at 3426.189 kb on + strand, within AO353_15505at 3426.211 kb on + strand, within AO353_15505at 3426.211 kb on + strand, within AO353_15505at 3426.212 kb on - strand, within AO353_15505at 3426.427 kb on + strand, within AO353_15505at 3426.427 kb on + strand, within AO353_15505at 3426.564 kb on + strand, within AO353_15505at 3426.564 kb on + strand, within AO353_15505at 3426.564 kb on + strand, within AO353_15505at 3426.564 kb on + strand, within AO353_15505at 3426.564 kb on + strand, within AO353_15505at 3426.564 kb on + strand, within AO353_15505at 3426.564 kb on + strand, within AO353_15505at 3426.564 kb on + strand, within AO353_15505at 3426.564 kb on + strand, within AO353_15505at 3426.565 kb on - strand, within AO353_15505at 3426.565 kb on - strand, within AO353_15505at 3426.565 kb on - strand, within AO353_15505at 3426.565 kb on - strand, within AO353_15505at 3426.565 kb on - strand, within AO353_15505at 3426.571 kb on - strand, within AO353_15505at 3426.588 kb on + strand, within AO353_15505at 3426.588 kb on + strand, within AO353_15505at 3426.588 kb on + strand, within AO353_15505at 3426.589 kb on - strand, within AO353_15505at 3426.589 kb on - strand, within AO353_15505at 3426.623 kb on - strand, within AO353_15505at 3426.635 kb on + strand, within AO353_15505at 3426.635 kb on + strand, within AO353_15505at 3426.635 kb on + strand, within AO353_15505at 3426.636 kb on - strand, within AO353_15505at 3426.771 kb on + strand, within AO353_15505at 3426.772 kb on - strand, within AO353_15505at 3426.772 kb on - strand, within AO353_15505at 3426.772 kb on - strand, within AO353_15505at 3426.772 kb on - strand, within AO353_15505at 3426.780 kb on + strand, within AO353_15505at 3426.780 kb on + strand, within AO353_15505at 3426.780 kb on + strand, within AO353_15505at 3426.780 kb on + strand, within AO353_15505at 3426.780 kb on + strand, within AO353_15505at 3426.780 kb on + strand, within AO353_15505at 3426.780 kb on + strand, within AO353_15505at 3426.780 kb on + strand, within AO353_15505at 3426.780 kb on + strand, within AO353_15505at 3426.781 kb on - strand, within AO353_15505at 3426.781 kb on - strand, within AO353_15505at 3426.781 kb on - strand, within AO353_15505at 3426.781 kb on - strand, within AO353_15505at 3426.781 kb on - strand, within AO353_15505at 3426.781 kb on - strand, within AO353_15505at 3426.781 kb on - strand, within AO353_15505at 3426.792 kb on + strand, within AO353_15505at 3426.792 kb on + strand, within AO353_15505at 3426.792 kb on + strand, within AO353_15505at 3426.793 kb on - strand, within AO353_15505at 3426.793 kb on - strand, within AO353_15505at 3426.944 kb on + strandat 3426.945 kb on - strandat 3426.945 kb on - strandat 3426.982 kb on - strandat 3426.987 kb on + strandat 3426.987 kb on + strandat 3426.987 kb on + strandat 3426.987 kb on + strandat 3426.987 kb on + strandat 3426.987 kb on + strandat 3426.988 kb on - strandat 3426.988 kb on - strandat 3426.988 kb on - strandat 3426.988 kb on - strandat 3426.988 kb on - strandat 3426.988 kb on - strandat 3426.991 kb on + strandat 3427.095 kb on - strandat 3427.104 kb on - strandat 3427.104 kb on - strandat 3427.104 kb on - strandat 3427.115 kb on + strandat 3427.115 kb on + strandat 3427.115 kb on + strandat 3427.115 kb on + strandat 3427.115 kb on + strandat 3427.116 kb on - strandat 3427.116 kb on - strandat 3427.116 kb on - strandat 3427.116 kb on - strandat 3427.116 kb on - strandat 3427.133 kb on + strandat 3427.145 kb on + strandat 3427.145 kb on + strandat 3427.145 kb on + strandat 3427.145 kb on + strandat 3427.146 kb on - strandat 3427.146 kb on - strandat 3427.177 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.181 kb on + strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.182 kb on - strand, within AO353_15510at 3427.184 kb on + strand, within AO353_15510at 3427.184 kb on + strand, within AO353_15510at 3427.184 kb on + strand, within AO353_15510at 3427.184 kb on + strand, within AO353_15510at 3427.184 kb on + strand, within AO353_15510at 3427.184 kb on + strand, within AO353_15510at 3427.184 kb on + strand, within AO353_15510at 3427.185 kb on - strand, within AO353_15510at 3427.337 kb on + strand, within AO353_15510at 3427.337 kb on + strand, within AO353_15510at 3427.337 kb on + strand, within AO353_15510at 3427.338 kb on - strand, within AO353_15510at 3427.517 kb on + strandat 3427.518 kb on - strandat 3427.518 kb on - strandat 3427.649 kb on - strandat 3427.676 kb on + strandat 3427.806 kb on + strandat 3427.806 kb on + strandat 3427.807 kb on - strandat 3427.807 kb on - strandat 3427.807 kb on - strandat 3427.807 kb on - strandat 3427.807 kb on - strandat 3427.881 kb on + strandat 3427.881 kb on + strandat 3427.881 kb on + strandat 3427.881 kb on + strandat 3427.882 kb on - strandat 3428.012 kb on + strand, within AO353_15515at 3428.012 kb on + strand, within AO353_15515at 3428.012 kb on + strand, within AO353_15515at 3428.012 kb on + strand, within AO353_15515at 3428.012 kb on + strand, within AO353_15515at 3428.012 kb on + strand, within AO353_15515at 3428.012 kb on + strand, within AO353_15515at 3428.012 kb on + strand, within AO353_15515at 3428.012 kb on + strand, within AO353_15515at 3428.012 kb on + strand, within AO353_15515at 3428.013 kb on - strand, within AO353_15515at 3428.013 kb on - strand, within AO353_15515at 3428.013 kb on - strand, within AO353_15515at 3428.013 kb on - strand, within AO353_15515at 3428.013 kb on - strand, within AO353_15515at 3428.036 kb on + strand, within AO353_15515at 3428.036 kb on + strand, within AO353_15515at 3428.037 kb on - strand, within AO353_15515at 3428.053 kb on - strand, within AO353_15515at 3428.102 kb on + strand, within AO353_15515at 3428.103 kb on - strand, within AO353_15515at 3428.152 kb on + strand, within AO353_15515at 3428.152 kb on + strand, within AO353_15515at 3428.152 kb on + strand, within AO353_15515at 3428.152 kb on + strand, within AO353_15515at 3428.153 kb on - strand, within AO353_15515at 3428.153 kb on - strand, within AO353_15515at 3428.153 kb on - strand, within AO353_15515at 3428.153 kb on - strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.154 kb on + strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.155 kb on - strand, within AO353_15515at 3428.283 kb on - strand, within AO353_15515at 3428.378 kb on + strand, within AO353_15515at 3428.378 kb on + strand, within AO353_15515at 3428.379 kb on - strand, within AO353_15515at 3428.386 kb on - strand, within AO353_15515at 3428.467 kb on + strand, within AO353_15515at 3428.468 kb on - strand, within AO353_15515at 3428.516 kb on - strandat 3428.516 kb on - strand, within AO353_15515at 3428.516 kb on - strand, within AO353_15515at 3428.516 kb on - strand, within AO353_15515

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,426,179 + AO353_15505 0.24 +0.7
3,426,179 + AO353_15505 0.24 -0.2
3,426,180 - AO353_15505 0.24 +0.2
3,426,189 + AO353_15505 0.25 -3.1
3,426,211 + AO353_15505 0.27 +2.1
3,426,211 + AO353_15505 0.27 +0.0
3,426,212 - AO353_15505 0.27 +0.5
3,426,427 + AO353_15505 0.50 +0.9
3,426,427 + AO353_15505 0.50 +0.1
3,426,564 + AO353_15505 0.64 +0.1
3,426,564 + AO353_15505 0.64 +0.5
3,426,564 + AO353_15505 0.64 -0.8
3,426,564 + AO353_15505 0.64 -0.9
3,426,564 + AO353_15505 0.64 -0.9
3,426,564 + AO353_15505 0.64 +0.8
3,426,564 + AO353_15505 0.64 -1.4
3,426,564 + AO353_15505 0.64 -0.4
3,426,564 + AO353_15505 0.64 +0.2
3,426,565 - AO353_15505 0.64 -0.1
3,426,565 - AO353_15505 0.64 +1.1
3,426,565 - AO353_15505 0.64 -0.5
3,426,565 - AO353_15505 0.64 -2.1
3,426,565 - AO353_15505 0.64 +1.0
3,426,571 - AO353_15505 0.65 +0.4
3,426,588 + AO353_15505 0.67 -0.2
3,426,588 + AO353_15505 0.67 -0.3
3,426,588 + AO353_15505 0.67 -0.5
3,426,589 - AO353_15505 0.67 +0.3
3,426,589 - AO353_15505 0.67 -1.3
3,426,623 - AO353_15505 0.70 +0.2
3,426,635 + AO353_15505 0.72 -0.5
3,426,635 + AO353_15505 0.72 -1.2
3,426,635 + AO353_15505 0.72 +1.2
3,426,636 - AO353_15505 0.72 +1.4
3,426,771 + AO353_15505 0.86 +0.0
3,426,772 - AO353_15505 0.86 +0.0
3,426,772 - AO353_15505 0.86 +0.9
3,426,772 - AO353_15505 0.86 -0.6
3,426,772 - AO353_15505 0.86 +1.7
3,426,780 + AO353_15505 0.87 +1.6
3,426,780 + AO353_15505 0.87 +1.2
3,426,780 + AO353_15505 0.87 -0.7
3,426,780 + AO353_15505 0.87 +0.2
3,426,780 + AO353_15505 0.87 -0.5
3,426,780 + AO353_15505 0.87 +0.3
3,426,780 + AO353_15505 0.87 +0.1
3,426,780 + AO353_15505 0.87 -0.4
3,426,780 + AO353_15505 0.87 +0.5
3,426,781 - AO353_15505 0.87 +0.4
3,426,781 - AO353_15505 0.87 +0.4
3,426,781 - AO353_15505 0.87 +1.9
3,426,781 - AO353_15505 0.87 -0.8
3,426,781 - AO353_15505 0.87 +0.4
3,426,781 - AO353_15505 0.87 -0.7
3,426,781 - AO353_15505 0.87 +1.7
3,426,792 + AO353_15505 0.88 -1.9
3,426,792 + AO353_15505 0.88 -0.8
3,426,792 + AO353_15505 0.88 +2.5
3,426,793 - AO353_15505 0.88 +0.2
3,426,793 - AO353_15505 0.88 -1.6
3,426,944 + +0.5
3,426,945 - +0.5
3,426,945 - +1.5
3,426,982 - +2.8
3,426,987 + +2.5
3,426,987 + +2.7
3,426,987 + -1.7
3,426,987 + +1.0
3,426,987 + +3.1
3,426,987 + +1.1
3,426,988 - -1.1
3,426,988 - +1.1
3,426,988 - +1.7
3,426,988 - +2.2
3,426,988 - -1.2
3,426,988 - +1.9
3,426,991 + +5.3
3,427,095 - +3.2
3,427,104 - +0.6
3,427,104 - +0.7
3,427,104 - +2.6
3,427,115 + +3.8
3,427,115 + +1.5
3,427,115 + +1.8
3,427,115 + +2.2
3,427,115 + -0.1
3,427,116 - +4.2
3,427,116 - +4.1
3,427,116 - +3.2
3,427,116 - +2.8
3,427,116 - +0.8
3,427,133 + +3.0
3,427,145 + +3.5
3,427,145 + +3.0
3,427,145 + +2.2
3,427,145 + +3.7
3,427,146 - -1.4
3,427,146 - +2.4
3,427,177 + AO353_15510 0.15 +3.1
3,427,181 + AO353_15510 0.16 +2.2
3,427,181 + AO353_15510 0.16 +2.8
3,427,181 + AO353_15510 0.16 +2.4
3,427,181 + AO353_15510 0.16 +2.1
3,427,181 + AO353_15510 0.16 +1.6
3,427,181 + AO353_15510 0.16 +1.8
3,427,181 + AO353_15510 0.16 +2.4
3,427,181 + AO353_15510 0.16 +2.1
3,427,181 + AO353_15510 0.16 +2.2
3,427,181 + AO353_15510 0.16 +0.1
3,427,181 + AO353_15510 0.16 +2.1
3,427,181 + AO353_15510 0.16 +2.2
3,427,181 + AO353_15510 0.16 +1.8
3,427,181 + AO353_15510 0.16 +1.8
3,427,181 + AO353_15510 0.16 -1.3
3,427,182 - AO353_15510 0.16 +2.0
3,427,182 - AO353_15510 0.16 +0.5
3,427,182 - AO353_15510 0.16 +2.4
3,427,182 - AO353_15510 0.16 +1.6
3,427,182 - AO353_15510 0.16 +4.0
3,427,182 - AO353_15510 0.16 +1.2
3,427,182 - AO353_15510 0.16 +1.2
3,427,182 - AO353_15510 0.16 +1.0
3,427,182 - AO353_15510 0.16 +2.3
3,427,182 - AO353_15510 0.16 +2.4
3,427,182 - AO353_15510 0.16 +2.6
3,427,182 - AO353_15510 0.16 +2.7
3,427,182 - AO353_15510 0.16 +2.5
3,427,182 - AO353_15510 0.16 +2.1
3,427,182 - AO353_15510 0.16 +2.2
3,427,182 - AO353_15510 0.16 +2.6
3,427,182 - AO353_15510 0.16 +2.8
3,427,182 - AO353_15510 0.16 +3.8
3,427,182 - AO353_15510 0.16 -0.2
3,427,184 + AO353_15510 0.17 +3.1
3,427,184 + AO353_15510 0.17 +2.7
3,427,184 + AO353_15510 0.17 +2.1
3,427,184 + AO353_15510 0.17 +2.2
3,427,184 + AO353_15510 0.17 +4.4
3,427,184 + AO353_15510 0.17 +0.5
3,427,184 + AO353_15510 0.17 +2.6
3,427,185 - AO353_15510 0.17 +2.7
3,427,337 + AO353_15510 0.54 +2.5
3,427,337 + AO353_15510 0.54 +0.4
3,427,337 + AO353_15510 0.54 +2.9
3,427,338 - AO353_15510 0.54 +1.5
3,427,517 + +0.9
3,427,518 - +1.7
3,427,518 - +1.0
3,427,649 - +2.1
3,427,676 + -1.1
3,427,806 + +0.5
3,427,806 + -1.1
3,427,807 - -0.5
3,427,807 - +1.4
3,427,807 - -0.1
3,427,807 - -2.2
3,427,807 - +4.3
3,427,881 + +0.0
3,427,881 + +2.8
3,427,881 + -1.3
3,427,881 + -1.3
3,427,882 - -0.3
3,428,012 + AO353_15515 0.15 -0.2
3,428,012 + AO353_15515 0.15 +0.2
3,428,012 + AO353_15515 0.15 -1.2
3,428,012 + AO353_15515 0.15 +0.1
3,428,012 + AO353_15515 0.15 +0.6
3,428,012 + AO353_15515 0.15 +2.0
3,428,012 + AO353_15515 0.15 +0.5
3,428,012 + AO353_15515 0.15 +1.8
3,428,012 + AO353_15515 0.15 -0.0
3,428,012 + AO353_15515 0.15 +1.5
3,428,013 - AO353_15515 0.15 +0.6
3,428,013 - AO353_15515 0.15 +0.0
3,428,013 - AO353_15515 0.15 -0.9
3,428,013 - AO353_15515 0.15 +0.0
3,428,013 - AO353_15515 0.15 -1.2
3,428,036 + AO353_15515 0.16 -0.7
3,428,036 + AO353_15515 0.16 +2.8
3,428,037 - AO353_15515 0.16 +0.5
3,428,053 - AO353_15515 0.17 +0.7
3,428,102 + AO353_15515 0.19 +0.8
3,428,103 - AO353_15515 0.19 -0.7
3,428,152 + AO353_15515 0.21 +1.0
3,428,152 + AO353_15515 0.21 +1.4
3,428,152 + AO353_15515 0.21 +1.7
3,428,152 + AO353_15515 0.21 -1.5
3,428,153 - AO353_15515 0.22 -2.4
3,428,153 - AO353_15515 0.22 +0.9
3,428,153 - AO353_15515 0.22 +1.2
3,428,153 - AO353_15515 0.22 -0.2
3,428,154 + AO353_15515 0.22 -1.3
3,428,154 + AO353_15515 0.22 -0.2
3,428,154 + AO353_15515 0.22 +0.8
3,428,154 + AO353_15515 0.22 +1.8
3,428,154 + AO353_15515 0.22 -0.5
3,428,154 + AO353_15515 0.22 -0.2
3,428,154 + AO353_15515 0.22 -0.4
3,428,154 + AO353_15515 0.22 +1.6
3,428,154 + AO353_15515 0.22 +1.4
3,428,154 + AO353_15515 0.22 +1.3
3,428,154 + AO353_15515 0.22 +2.3
3,428,154 + AO353_15515 0.22 +2.5
3,428,154 + AO353_15515 0.22 -1.2
3,428,154 + AO353_15515 0.22 -1.7
3,428,154 + AO353_15515 0.22 +0.5
3,428,154 + AO353_15515 0.22 -0.7
3,428,155 - AO353_15515 0.22 -0.1
3,428,155 - AO353_15515 0.22 +0.1
3,428,155 - AO353_15515 0.22 -1.4
3,428,155 - AO353_15515 0.22 -1.3
3,428,155 - AO353_15515 0.22 -0.0
3,428,155 - AO353_15515 0.22 +1.7
3,428,155 - AO353_15515 0.22 -0.1
3,428,155 - AO353_15515 0.22 +1.5
3,428,155 - AO353_15515 0.22 -0.5
3,428,155 - AO353_15515 0.22 +1.0
3,428,155 - AO353_15515 0.22 +0.1
3,428,155 - AO353_15515 0.22 +0.5
3,428,155 - AO353_15515 0.22 +0.5
3,428,283 - AO353_15515 0.27 -0.1
3,428,378 + AO353_15515 0.31 +0.5
3,428,378 + AO353_15515 0.31 +0.1
3,428,379 - AO353_15515 0.31 +2.6
3,428,386 - AO353_15515 0.32 +0.3
3,428,467 + AO353_15515 0.35 +0.5
3,428,468 - AO353_15515 0.35 +1.5
3,428,516 - +4.1
3,428,516 - AO353_15515 0.37 +2.5
3,428,516 - AO353_15515 0.37 +0.3
3,428,516 - AO353_15515 0.37 +0.2

Or see this region's nucleotide sequence