Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_15505 and AO353_15510 are separated by 213 nucleotides AO353_15510 and AO353_15515 are separated by 131 nucleotides
AO353_15505: AO353_15505 - LysR family transcriptional regulator, at 3,425,955 to 3,426,902
_15505
AO353_15510: AO353_15510 - ribosomal subunit interface protein, at 3,427,116 to 3,427,523
_15510
AO353_15515: AO353_15515 - penicillin-binding protein 1C, at 3,427,655 to 3,429,970
_15515
Position (kb)
3427
3428 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3426.179 kb on + strand, within AO353_15505 at 3426.179 kb on + strand, within AO353_15505 at 3426.180 kb on - strand, within AO353_15505 at 3426.189 kb on + strand, within AO353_15505 at 3426.211 kb on + strand, within AO353_15505 at 3426.211 kb on + strand, within AO353_15505 at 3426.212 kb on - strand, within AO353_15505 at 3426.427 kb on + strand, within AO353_15505 at 3426.427 kb on + strand, within AO353_15505 at 3426.564 kb on + strand, within AO353_15505 at 3426.564 kb on + strand, within AO353_15505 at 3426.564 kb on + strand, within AO353_15505 at 3426.564 kb on + strand, within AO353_15505 at 3426.564 kb on + strand, within AO353_15505 at 3426.564 kb on + strand, within AO353_15505 at 3426.564 kb on + strand, within AO353_15505 at 3426.564 kb on + strand, within AO353_15505 at 3426.564 kb on + strand, within AO353_15505 at 3426.565 kb on - strand, within AO353_15505 at 3426.565 kb on - strand, within AO353_15505 at 3426.565 kb on - strand, within AO353_15505 at 3426.565 kb on - strand, within AO353_15505 at 3426.565 kb on - strand, within AO353_15505 at 3426.571 kb on - strand, within AO353_15505 at 3426.588 kb on + strand, within AO353_15505 at 3426.588 kb on + strand, within AO353_15505 at 3426.588 kb on + strand, within AO353_15505 at 3426.589 kb on - strand, within AO353_15505 at 3426.589 kb on - strand, within AO353_15505 at 3426.623 kb on - strand, within AO353_15505 at 3426.635 kb on + strand, within AO353_15505 at 3426.635 kb on + strand, within AO353_15505 at 3426.635 kb on + strand, within AO353_15505 at 3426.636 kb on - strand, within AO353_15505 at 3426.771 kb on + strand, within AO353_15505 at 3426.772 kb on - strand, within AO353_15505 at 3426.772 kb on - strand, within AO353_15505 at 3426.772 kb on - strand, within AO353_15505 at 3426.772 kb on - strand, within AO353_15505 at 3426.780 kb on + strand, within AO353_15505 at 3426.780 kb on + strand, within AO353_15505 at 3426.780 kb on + strand, within AO353_15505 at 3426.780 kb on + strand, within AO353_15505 at 3426.780 kb on + strand, within AO353_15505 at 3426.780 kb on + strand, within AO353_15505 at 3426.780 kb on + strand, within AO353_15505 at 3426.780 kb on + strand, within AO353_15505 at 3426.780 kb on + strand, within AO353_15505 at 3426.781 kb on - strand, within AO353_15505 at 3426.781 kb on - strand, within AO353_15505 at 3426.781 kb on - strand, within AO353_15505 at 3426.781 kb on - strand, within AO353_15505 at 3426.781 kb on - strand, within AO353_15505 at 3426.781 kb on - strand, within AO353_15505 at 3426.781 kb on - strand, within AO353_15505 at 3426.792 kb on + strand, within AO353_15505 at 3426.792 kb on + strand, within AO353_15505 at 3426.792 kb on + strand, within AO353_15505 at 3426.793 kb on - strand, within AO353_15505 at 3426.793 kb on - strand, within AO353_15505 at 3426.944 kb on + strand at 3426.945 kb on - strand at 3426.945 kb on - strand at 3426.982 kb on - strand at 3426.987 kb on + strand at 3426.987 kb on + strand at 3426.987 kb on + strand at 3426.987 kb on + strand at 3426.987 kb on + strand at 3426.987 kb on + strand at 3426.988 kb on - strand at 3426.988 kb on - strand at 3426.988 kb on - strand at 3426.988 kb on - strand at 3426.988 kb on - strand at 3426.988 kb on - strand at 3426.991 kb on + strand at 3427.095 kb on - strand at 3427.104 kb on - strand at 3427.104 kb on - strand at 3427.104 kb on - strand at 3427.115 kb on + strand at 3427.115 kb on + strand at 3427.115 kb on + strand at 3427.115 kb on + strand at 3427.115 kb on + strand at 3427.116 kb on - strand at 3427.116 kb on - strand at 3427.116 kb on - strand at 3427.116 kb on - strand at 3427.116 kb on - strand at 3427.133 kb on + strand at 3427.145 kb on + strand at 3427.145 kb on + strand at 3427.145 kb on + strand at 3427.145 kb on + strand at 3427.146 kb on - strand at 3427.146 kb on - strand at 3427.177 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.181 kb on + strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.182 kb on - strand, within AO353_15510 at 3427.184 kb on + strand, within AO353_15510 at 3427.184 kb on + strand, within AO353_15510 at 3427.184 kb on + strand, within AO353_15510 at 3427.184 kb on + strand, within AO353_15510 at 3427.184 kb on + strand, within AO353_15510 at 3427.184 kb on + strand, within AO353_15510 at 3427.184 kb on + strand, within AO353_15510 at 3427.185 kb on - strand, within AO353_15510 at 3427.337 kb on + strand, within AO353_15510 at 3427.337 kb on + strand, within AO353_15510 at 3427.337 kb on + strand, within AO353_15510 at 3427.338 kb on - strand, within AO353_15510 at 3427.517 kb on + strand at 3427.518 kb on - strand at 3427.518 kb on - strand at 3427.649 kb on - strand at 3427.676 kb on + strand at 3427.806 kb on + strand at 3427.806 kb on + strand at 3427.807 kb on - strand at 3427.807 kb on - strand at 3427.807 kb on - strand at 3427.807 kb on - strand at 3427.807 kb on - strand at 3427.881 kb on + strand at 3427.881 kb on + strand at 3427.881 kb on + strand at 3427.881 kb on + strand at 3427.882 kb on - strand at 3428.012 kb on + strand, within AO353_15515 at 3428.012 kb on + strand, within AO353_15515 at 3428.012 kb on + strand, within AO353_15515 at 3428.012 kb on + strand, within AO353_15515 at 3428.012 kb on + strand, within AO353_15515 at 3428.012 kb on + strand, within AO353_15515 at 3428.012 kb on + strand, within AO353_15515 at 3428.012 kb on + strand, within AO353_15515 at 3428.012 kb on + strand, within AO353_15515 at 3428.012 kb on + strand, within AO353_15515 at 3428.013 kb on - strand, within AO353_15515 at 3428.013 kb on - strand, within AO353_15515 at 3428.013 kb on - strand, within AO353_15515 at 3428.013 kb on - strand, within AO353_15515 at 3428.013 kb on - strand, within AO353_15515 at 3428.036 kb on + strand, within AO353_15515 at 3428.036 kb on + strand, within AO353_15515 at 3428.037 kb on - strand, within AO353_15515 at 3428.053 kb on - strand, within AO353_15515 at 3428.102 kb on + strand, within AO353_15515 at 3428.103 kb on - strand, within AO353_15515 at 3428.152 kb on + strand, within AO353_15515 at 3428.152 kb on + strand, within AO353_15515 at 3428.152 kb on + strand, within AO353_15515 at 3428.152 kb on + strand, within AO353_15515 at 3428.153 kb on - strand, within AO353_15515 at 3428.153 kb on - strand, within AO353_15515 at 3428.153 kb on - strand, within AO353_15515 at 3428.153 kb on - strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.154 kb on + strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.155 kb on - strand, within AO353_15515 at 3428.283 kb on - strand, within AO353_15515 at 3428.378 kb on + strand, within AO353_15515 at 3428.378 kb on + strand, within AO353_15515 at 3428.379 kb on - strand, within AO353_15515 at 3428.386 kb on - strand, within AO353_15515 at 3428.467 kb on + strand, within AO353_15515 at 3428.468 kb on - strand, within AO353_15515 at 3428.516 kb on - strand at 3428.516 kb on - strand, within AO353_15515 at 3428.516 kb on - strand, within AO353_15515 at 3428.516 kb on - strand, within AO353_15515
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 3,426,179 + AO353_15505 0.24 +0.7 3,426,179 + AO353_15505 0.24 -0.2 3,426,180 - AO353_15505 0.24 +0.2 3,426,189 + AO353_15505 0.25 -3.1 3,426,211 + AO353_15505 0.27 +2.1 3,426,211 + AO353_15505 0.27 +0.0 3,426,212 - AO353_15505 0.27 +0.5 3,426,427 + AO353_15505 0.50 +0.9 3,426,427 + AO353_15505 0.50 +0.1 3,426,564 + AO353_15505 0.64 +0.1 3,426,564 + AO353_15505 0.64 +0.5 3,426,564 + AO353_15505 0.64 -0.8 3,426,564 + AO353_15505 0.64 -0.9 3,426,564 + AO353_15505 0.64 -0.9 3,426,564 + AO353_15505 0.64 +0.8 3,426,564 + AO353_15505 0.64 -1.4 3,426,564 + AO353_15505 0.64 -0.4 3,426,564 + AO353_15505 0.64 +0.2 3,426,565 - AO353_15505 0.64 -0.1 3,426,565 - AO353_15505 0.64 +1.1 3,426,565 - AO353_15505 0.64 -0.5 3,426,565 - AO353_15505 0.64 -2.1 3,426,565 - AO353_15505 0.64 +1.0 3,426,571 - AO353_15505 0.65 +0.4 3,426,588 + AO353_15505 0.67 -0.2 3,426,588 + AO353_15505 0.67 -0.3 3,426,588 + AO353_15505 0.67 -0.5 3,426,589 - AO353_15505 0.67 +0.3 3,426,589 - AO353_15505 0.67 -1.3 3,426,623 - AO353_15505 0.70 +0.2 3,426,635 + AO353_15505 0.72 -0.5 3,426,635 + AO353_15505 0.72 -1.2 3,426,635 + AO353_15505 0.72 +1.2 3,426,636 - AO353_15505 0.72 +1.4 3,426,771 + AO353_15505 0.86 +0.0 3,426,772 - AO353_15505 0.86 +0.0 3,426,772 - AO353_15505 0.86 +0.9 3,426,772 - AO353_15505 0.86 -0.6 3,426,772 - AO353_15505 0.86 +1.7 3,426,780 + AO353_15505 0.87 +1.6 3,426,780 + AO353_15505 0.87 +1.2 3,426,780 + AO353_15505 0.87 -0.7 3,426,780 + AO353_15505 0.87 +0.2 3,426,780 + AO353_15505 0.87 -0.5 3,426,780 + AO353_15505 0.87 +0.3 3,426,780 + AO353_15505 0.87 +0.1 3,426,780 + AO353_15505 0.87 -0.4 3,426,780 + AO353_15505 0.87 +0.5 3,426,781 - AO353_15505 0.87 +0.4 3,426,781 - AO353_15505 0.87 +0.4 3,426,781 - AO353_15505 0.87 +1.9 3,426,781 - AO353_15505 0.87 -0.8 3,426,781 - AO353_15505 0.87 +0.4 3,426,781 - AO353_15505 0.87 -0.7 3,426,781 - AO353_15505 0.87 +1.7 3,426,792 + AO353_15505 0.88 -1.9 3,426,792 + AO353_15505 0.88 -0.8 3,426,792 + AO353_15505 0.88 +2.5 3,426,793 - AO353_15505 0.88 +0.2 3,426,793 - AO353_15505 0.88 -1.6 3,426,944 + +0.5 3,426,945 - +0.5 3,426,945 - +1.5 3,426,982 - +2.8 3,426,987 + +2.5 3,426,987 + +2.7 3,426,987 + -1.7 3,426,987 + +1.0 3,426,987 + +3.1 3,426,987 + +1.1 3,426,988 - -1.1 3,426,988 - +1.1 3,426,988 - +1.7 3,426,988 - +2.2 3,426,988 - -1.2 3,426,988 - +1.9 3,426,991 + +5.3 3,427,095 - +3.2 3,427,104 - +0.6 3,427,104 - +0.7 3,427,104 - +2.6 3,427,115 + +3.8 3,427,115 + +1.5 3,427,115 + +1.8 3,427,115 + +2.2 3,427,115 + -0.1 3,427,116 - +4.2 3,427,116 - +4.1 3,427,116 - +3.2 3,427,116 - +2.8 3,427,116 - +0.8 3,427,133 + +3.0 3,427,145 + +3.5 3,427,145 + +3.0 3,427,145 + +2.2 3,427,145 + +3.7 3,427,146 - -1.4 3,427,146 - +2.4 3,427,177 + AO353_15510 0.15 +3.1 3,427,181 + AO353_15510 0.16 +2.2 3,427,181 + AO353_15510 0.16 +2.8 3,427,181 + AO353_15510 0.16 +2.4 3,427,181 + AO353_15510 0.16 +2.1 3,427,181 + AO353_15510 0.16 +1.6 3,427,181 + AO353_15510 0.16 +1.8 3,427,181 + AO353_15510 0.16 +2.4 3,427,181 + AO353_15510 0.16 +2.1 3,427,181 + AO353_15510 0.16 +2.2 3,427,181 + AO353_15510 0.16 +0.1 3,427,181 + AO353_15510 0.16 +2.1 3,427,181 + AO353_15510 0.16 +2.2 3,427,181 + AO353_15510 0.16 +1.8 3,427,181 + AO353_15510 0.16 +1.8 3,427,181 + AO353_15510 0.16 -1.3 3,427,182 - AO353_15510 0.16 +2.0 3,427,182 - AO353_15510 0.16 +0.5 3,427,182 - AO353_15510 0.16 +2.4 3,427,182 - AO353_15510 0.16 +1.6 3,427,182 - AO353_15510 0.16 +4.0 3,427,182 - AO353_15510 0.16 +1.2 3,427,182 - AO353_15510 0.16 +1.2 3,427,182 - AO353_15510 0.16 +1.0 3,427,182 - AO353_15510 0.16 +2.3 3,427,182 - AO353_15510 0.16 +2.4 3,427,182 - AO353_15510 0.16 +2.6 3,427,182 - AO353_15510 0.16 +2.7 3,427,182 - AO353_15510 0.16 +2.5 3,427,182 - AO353_15510 0.16 +2.1 3,427,182 - AO353_15510 0.16 +2.2 3,427,182 - AO353_15510 0.16 +2.6 3,427,182 - AO353_15510 0.16 +2.8 3,427,182 - AO353_15510 0.16 +3.8 3,427,182 - AO353_15510 0.16 -0.2 3,427,184 + AO353_15510 0.17 +3.1 3,427,184 + AO353_15510 0.17 +2.7 3,427,184 + AO353_15510 0.17 +2.1 3,427,184 + AO353_15510 0.17 +2.2 3,427,184 + AO353_15510 0.17 +4.4 3,427,184 + AO353_15510 0.17 +0.5 3,427,184 + AO353_15510 0.17 +2.6 3,427,185 - AO353_15510 0.17 +2.7 3,427,337 + AO353_15510 0.54 +2.5 3,427,337 + AO353_15510 0.54 +0.4 3,427,337 + AO353_15510 0.54 +2.9 3,427,338 - AO353_15510 0.54 +1.5 3,427,517 + +0.9 3,427,518 - +1.7 3,427,518 - +1.0 3,427,649 - +2.1 3,427,676 + -1.1 3,427,806 + +0.5 3,427,806 + -1.1 3,427,807 - -0.5 3,427,807 - +1.4 3,427,807 - -0.1 3,427,807 - -2.2 3,427,807 - +4.3 3,427,881 + +0.0 3,427,881 + +2.8 3,427,881 + -1.3 3,427,881 + -1.3 3,427,882 - -0.3 3,428,012 + AO353_15515 0.15 -0.2 3,428,012 + AO353_15515 0.15 +0.2 3,428,012 + AO353_15515 0.15 -1.2 3,428,012 + AO353_15515 0.15 +0.1 3,428,012 + AO353_15515 0.15 +0.6 3,428,012 + AO353_15515 0.15 +2.0 3,428,012 + AO353_15515 0.15 +0.5 3,428,012 + AO353_15515 0.15 +1.8 3,428,012 + AO353_15515 0.15 -0.0 3,428,012 + AO353_15515 0.15 +1.5 3,428,013 - AO353_15515 0.15 +0.6 3,428,013 - AO353_15515 0.15 +0.0 3,428,013 - AO353_15515 0.15 -0.9 3,428,013 - AO353_15515 0.15 +0.0 3,428,013 - AO353_15515 0.15 -1.2 3,428,036 + AO353_15515 0.16 -0.7 3,428,036 + AO353_15515 0.16 +2.8 3,428,037 - AO353_15515 0.16 +0.5 3,428,053 - AO353_15515 0.17 +0.7 3,428,102 + AO353_15515 0.19 +0.8 3,428,103 - AO353_15515 0.19 -0.7 3,428,152 + AO353_15515 0.21 +1.0 3,428,152 + AO353_15515 0.21 +1.4 3,428,152 + AO353_15515 0.21 +1.7 3,428,152 + AO353_15515 0.21 -1.5 3,428,153 - AO353_15515 0.22 -2.4 3,428,153 - AO353_15515 0.22 +0.9 3,428,153 - AO353_15515 0.22 +1.2 3,428,153 - AO353_15515 0.22 -0.2 3,428,154 + AO353_15515 0.22 -1.3 3,428,154 + AO353_15515 0.22 -0.2 3,428,154 + AO353_15515 0.22 +0.8 3,428,154 + AO353_15515 0.22 +1.8 3,428,154 + AO353_15515 0.22 -0.5 3,428,154 + AO353_15515 0.22 -0.2 3,428,154 + AO353_15515 0.22 -0.4 3,428,154 + AO353_15515 0.22 +1.6 3,428,154 + AO353_15515 0.22 +1.4 3,428,154 + AO353_15515 0.22 +1.3 3,428,154 + AO353_15515 0.22 +2.3 3,428,154 + AO353_15515 0.22 +2.5 3,428,154 + AO353_15515 0.22 -1.2 3,428,154 + AO353_15515 0.22 -1.7 3,428,154 + AO353_15515 0.22 +0.5 3,428,154 + AO353_15515 0.22 -0.7 3,428,155 - AO353_15515 0.22 -0.1 3,428,155 - AO353_15515 0.22 +0.1 3,428,155 - AO353_15515 0.22 -1.4 3,428,155 - AO353_15515 0.22 -1.3 3,428,155 - AO353_15515 0.22 -0.0 3,428,155 - AO353_15515 0.22 +1.7 3,428,155 - AO353_15515 0.22 -0.1 3,428,155 - AO353_15515 0.22 +1.5 3,428,155 - AO353_15515 0.22 -0.5 3,428,155 - AO353_15515 0.22 +1.0 3,428,155 - AO353_15515 0.22 +0.1 3,428,155 - AO353_15515 0.22 +0.5 3,428,155 - AO353_15515 0.22 +0.5 3,428,283 - AO353_15515 0.27 -0.1 3,428,378 + AO353_15515 0.31 +0.5 3,428,378 + AO353_15515 0.31 +0.1 3,428,379 - AO353_15515 0.31 +2.6 3,428,386 - AO353_15515 0.32 +0.3 3,428,467 + AO353_15515 0.35 +0.5 3,428,468 - AO353_15515 0.35 +1.5 3,428,516 - +4.1 3,428,516 - AO353_15515 0.37 +2.5 3,428,516 - AO353_15515 0.37 +0.3 3,428,516 - AO353_15515 0.37 +0.2
Or see this region's nucleotide sequence