Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12585

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12575 and AO353_12580 overlap by 4 nucleotidesAO353_12580 and AO353_12585 overlap by 4 nucleotidesAO353_12585 and AO353_12590 overlap by 4 nucleotidesAO353_12590 and AO353_12595 are separated by 10 nucleotides AO353_12575: AO353_12575 - type II secretion system protein GspJ, at 2,770,671 to 2,771,216 _12575 AO353_12580: AO353_12580 - type II secretory protein PulK, at 2,771,213 to 2,772,067 _12580 AO353_12585: AO353_12585 - hypothetical protein, at 2,772,064 to 2,773,161 _12585 AO353_12590: AO353_12590 - hypothetical protein, at 2,773,158 to 2,773,625 _12590 AO353_12595: AO353_12595 - hypothetical protein, at 2,773,636 to 2,774,913 _12595 Position (kb) 2772 2773 2774Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2771.074 kb on - strand, within AO353_12575at 2771.074 kb on - strand, within AO353_12575at 2771.074 kb on - strand, within AO353_12575at 2771.114 kb on + strand, within AO353_12575at 2771.115 kb on - strand, within AO353_12575at 2771.321 kb on - strand, within AO353_12580at 2771.321 kb on - strand, within AO353_12580at 2771.455 kb on + strand, within AO353_12580at 2772.079 kb on + strandat 2772.079 kb on + strandat 2772.079 kb on + strandat 2772.079 kb on + strandat 2772.080 kb on - strandat 2772.147 kb on + strandat 2772.148 kb on - strandat 2772.188 kb on + strand, within AO353_12585at 2772.188 kb on + strand, within AO353_12585at 2772.189 kb on - strand, within AO353_12585at 2772.239 kb on + strand, within AO353_12585at 2772.239 kb on + strand, within AO353_12585at 2772.239 kb on + strand, within AO353_12585at 2772.239 kb on + strand, within AO353_12585at 2772.239 kb on + strand, within AO353_12585at 2772.240 kb on - strand, within AO353_12585at 2772.243 kb on + strand, within AO353_12585at 2772.243 kb on + strand, within AO353_12585at 2772.438 kb on + strand, within AO353_12585at 2772.439 kb on - strand, within AO353_12585at 2772.490 kb on + strand, within AO353_12585at 2772.491 kb on - strand, within AO353_12585at 2772.491 kb on - strand, within AO353_12585at 2772.839 kb on - strand, within AO353_12585at 2772.839 kb on - strand, within AO353_12585at 2772.855 kb on + strand, within AO353_12585at 2772.855 kb on + strand, within AO353_12585at 2772.855 kb on + strand, within AO353_12585at 2772.856 kb on - strand, within AO353_12585at 2772.856 kb on - strand, within AO353_12585at 2773.180 kb on + strandat 2773.244 kb on - strand, within AO353_12590at 2773.244 kb on - strand, within AO353_12590at 2773.244 kb on - strand, within AO353_12590at 2773.329 kb on + strand, within AO353_12590at 2773.329 kb on + strand, within AO353_12590at 2773.330 kb on - strand, within AO353_12590at 2773.330 kb on - strand, within AO353_12590at 2773.330 kb on - strand, within AO353_12590at 2773.456 kb on + strand, within AO353_12590at 2773.456 kb on + strand, within AO353_12590at 2773.457 kb on - strand, within AO353_12590at 2773.797 kb on - strand, within AO353_12595at 2773.797 kb on - strand, within AO353_12595at 2773.797 kb on - strand, within AO353_12595at 2773.799 kb on + strand, within AO353_12595at 2773.799 kb on + strand, within AO353_12595at 2773.799 kb on + strand, within AO353_12595at 2773.799 kb on + strand, within AO353_12595at 2773.799 kb on + strand, within AO353_12595at 2773.800 kb on - strand, within AO353_12595at 2773.800 kb on - strand, within AO353_12595at 2773.800 kb on - strand, within AO353_12595at 2773.800 kb on - strand, within AO353_12595at 2773.811 kb on + strand, within AO353_12595at 2773.812 kb on - strand, within AO353_12595at 2773.812 kb on - strand, within AO353_12595at 2773.812 kb on - strand, within AO353_12595at 2774.042 kb on + strand, within AO353_12595at 2774.042 kb on + strand, within AO353_12595at 2774.042 kb on + strand, within AO353_12595at 2774.043 kb on - strand, within AO353_12595at 2774.043 kb on - strand, within AO353_12595at 2774.043 kb on - strand, within AO353_12595at 2774.057 kb on + strand, within AO353_12595at 2774.057 kb on + strand, within AO353_12595at 2774.058 kb on - strand, within AO353_12595at 2774.058 kb on - strand, within AO353_12595at 2774.058 kb on - strand, within AO353_12595at 2774.058 kb on - strand, within AO353_12595at 2774.100 kb on - strand, within AO353_12595at 2774.121 kb on - strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.130 kb on - strand, within AO353_12595at 2774.130 kb on - strand, within AO353_12595at 2774.130 kb on - strand, within AO353_12595at 2774.130 kb on - strand, within AO353_12595at 2774.130 kb on - strand, within AO353_12595

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,771,074 - AO353_12575 0.74 +0.3
2,771,074 - AO353_12575 0.74 +1.8
2,771,074 - AO353_12575 0.74 -1.2
2,771,114 + AO353_12575 0.81 -0.4
2,771,115 - AO353_12575 0.81 +1.0
2,771,321 - AO353_12580 0.13 +0.7
2,771,321 - AO353_12580 0.13 +2.4
2,771,455 + AO353_12580 0.28 +0.1
2,772,079 + -0.1
2,772,079 + -0.2
2,772,079 + -0.2
2,772,079 + +1.0
2,772,080 - +0.3
2,772,147 + +1.0
2,772,148 - -1.2
2,772,188 + AO353_12585 0.11 +1.2
2,772,188 + AO353_12585 0.11 +2.5
2,772,189 - AO353_12585 0.11 +0.4
2,772,239 + AO353_12585 0.16 -0.3
2,772,239 + AO353_12585 0.16 +1.2
2,772,239 + AO353_12585 0.16 -0.4
2,772,239 + AO353_12585 0.16 +1.7
2,772,239 + AO353_12585 0.16 +1.0
2,772,240 - AO353_12585 0.16 -1.2
2,772,243 + AO353_12585 0.16 -1.2
2,772,243 + AO353_12585 0.16 +0.4
2,772,438 + AO353_12585 0.34 +0.4
2,772,439 - AO353_12585 0.34 +0.6
2,772,490 + AO353_12585 0.39 +0.4
2,772,491 - AO353_12585 0.39 +0.6
2,772,491 - AO353_12585 0.39 -0.8
2,772,839 - AO353_12585 0.71 -1.1
2,772,839 - AO353_12585 0.71 -1.1
2,772,855 + AO353_12585 0.72 -1.3
2,772,855 + AO353_12585 0.72 +0.3
2,772,855 + AO353_12585 0.72 -0.6
2,772,856 - AO353_12585 0.72 -0.4
2,772,856 - AO353_12585 0.72 +0.3
2,773,180 + +1.4
2,773,244 - AO353_12590 0.18 +0.4
2,773,244 - AO353_12590 0.18 +2.3
2,773,244 - AO353_12590 0.18 +0.2
2,773,329 + AO353_12590 0.37 -0.2
2,773,329 + AO353_12590 0.37 +0.8
2,773,330 - AO353_12590 0.37 -0.1
2,773,330 - AO353_12590 0.37 +1.0
2,773,330 - AO353_12590 0.37 -3.0
2,773,456 + AO353_12590 0.64 -0.1
2,773,456 + AO353_12590 0.64 +1.1
2,773,457 - AO353_12590 0.64 +2.5
2,773,797 - AO353_12595 0.13 -1.1
2,773,797 - AO353_12595 0.13 -0.3
2,773,797 - AO353_12595 0.13 +0.7
2,773,799 + AO353_12595 0.13 -0.6
2,773,799 + AO353_12595 0.13 -0.6
2,773,799 + AO353_12595 0.13 -1.0
2,773,799 + AO353_12595 0.13 -0.6
2,773,799 + AO353_12595 0.13 -0.0
2,773,800 - AO353_12595 0.13 -1.0
2,773,800 - AO353_12595 0.13 -0.3
2,773,800 - AO353_12595 0.13 +1.2
2,773,800 - AO353_12595 0.13 -0.3
2,773,811 + AO353_12595 0.14 +1.3
2,773,812 - AO353_12595 0.14 +0.6
2,773,812 - AO353_12595 0.14 +0.4
2,773,812 - AO353_12595 0.14 +1.7
2,774,042 + AO353_12595 0.32 -0.1
2,774,042 + AO353_12595 0.32 +1.7
2,774,042 + AO353_12595 0.32 -1.4
2,774,043 - AO353_12595 0.32 +0.7
2,774,043 - AO353_12595 0.32 -0.6
2,774,043 - AO353_12595 0.32 -2.1
2,774,057 + AO353_12595 0.33 +1.0
2,774,057 + AO353_12595 0.33 +1.6
2,774,058 - AO353_12595 0.33 -0.1
2,774,058 - AO353_12595 0.33 -1.4
2,774,058 - AO353_12595 0.33 -0.2
2,774,058 - AO353_12595 0.33 +0.6
2,774,100 - AO353_12595 0.36 -0.1
2,774,121 - AO353_12595 0.38 +0.4
2,774,129 + AO353_12595 0.39 +1.1
2,774,129 + AO353_12595 0.39 +0.6
2,774,129 + AO353_12595 0.39 -0.1
2,774,129 + AO353_12595 0.39 +2.8
2,774,129 + AO353_12595 0.39 +0.5
2,774,129 + AO353_12595 0.39 +0.9
2,774,130 - AO353_12595 0.39 +2.0
2,774,130 - AO353_12595 0.39 +0.3
2,774,130 - AO353_12595 0.39 +2.0
2,774,130 - AO353_12595 0.39 +1.1
2,774,130 - AO353_12595 0.39 +1.1

Or see this region's nucleotide sequence