Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_08445 and AO353_08450 are separated by 63 nucleotides AO353_08450 and AO353_08455 are separated by 97 nucleotides AO353_08455 and AO353_08460 are separated by 121 nucleotides
AO353_08445: AO353_08445 - thymidylate synthase, at 1,856,855 to 1,857,826
_08445
AO353_08450: AO353_08450 - prolipoprotein diacylglyceryl transferase, at 1,857,890 to 1,858,705
_08450
AO353_08455: AO353_08455 - hypothetical protein, at 1,858,803 to 1,859,585
_08455
AO353_08460: AO353_08460 - hypothetical protein, at 1,859,707 to 1,860,453
_08460
Position (kb)
1858
1859
1860 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 1857.832 kb on - strand at 1857.832 kb on - strand at 1857.832 kb on - strand at 1857.832 kb on - strand at 1857.832 kb on - strand at 1857.832 kb on - strand at 1857.832 kb on - strand at 1857.877 kb on - strand at 1857.877 kb on - strand at 1857.877 kb on - strand at 1857.877 kb on - strand at 1857.877 kb on - strand at 1857.877 kb on - strand at 1857.877 kb on - strand at 1857.877 kb on - strand at 1857.877 kb on - strand at 1857.892 kb on - strand at 1857.892 kb on - strand at 1857.892 kb on - strand at 1857.892 kb on - strand at 1857.931 kb on - strand at 1858.720 kb on - strand at 1858.733 kb on - strand at 1858.944 kb on + strand, within AO353_08455 at 1858.945 kb on - strand, within AO353_08455 at 1858.948 kb on + strand, within AO353_08455 at 1858.948 kb on + strand, within AO353_08455 at 1858.949 kb on - strand, within AO353_08455 at 1858.949 kb on - strand, within AO353_08455 at 1858.949 kb on - strand, within AO353_08455 at 1858.949 kb on - strand, within AO353_08455 at 1858.949 kb on - strand, within AO353_08455 at 1858.949 kb on - strand, within AO353_08455 at 1858.949 kb on - strand, within AO353_08455 at 1858.949 kb on - strand, within AO353_08455 at 1858.949 kb on - strand, within AO353_08455 at 1858.964 kb on + strand, within AO353_08455 at 1858.964 kb on + strand, within AO353_08455 at 1858.964 kb on + strand, within AO353_08455 at 1858.964 kb on + strand, within AO353_08455 at 1858.964 kb on + strand, within AO353_08455 at 1858.964 kb on + strand, within AO353_08455 at 1858.964 kb on + strand, within AO353_08455 at 1858.965 kb on - strand, within AO353_08455 at 1858.965 kb on - strand, within AO353_08455 at 1858.965 kb on - strand, within AO353_08455 at 1859.010 kb on + strand, within AO353_08455 at 1859.010 kb on + strand, within AO353_08455 at 1859.010 kb on + strand, within AO353_08455 at 1859.010 kb on + strand, within AO353_08455 at 1859.010 kb on + strand, within AO353_08455 at 1859.010 kb on + strand, within AO353_08455 at 1859.010 kb on + strand, within AO353_08455 at 1859.011 kb on - strand, within AO353_08455 at 1859.011 kb on - strand, within AO353_08455 at 1859.011 kb on - strand, within AO353_08455 at 1859.181 kb on - strand, within AO353_08455 at 1859.181 kb on - strand, within AO353_08455 at 1859.569 kb on + strand at 1859.569 kb on + strand at 1859.569 kb on + strand at 1859.569 kb on + strand at 1859.570 kb on - strand at 1859.570 kb on - strand at 1859.570 kb on - strand at 1859.570 kb on - strand at 1859.570 kb on - strand at 1859.570 kb on - strand at 1859.600 kb on + strand at 1859.600 kb on + strand at 1859.600 kb on + strand at 1859.600 kb on + strand at 1859.600 kb on + strand at 1859.600 kb on + strand at 1859.600 kb on + strand at 1859.600 kb on + strand at 1859.600 kb on + strand at 1859.601 kb on - strand at 1859.601 kb on - strand at 1859.601 kb on - strand at 1859.601 kb on - strand at 1859.601 kb on - strand at 1859.601 kb on - strand at 1859.601 kb on - strand at 1859.601 kb on - strand at 1859.601 kb on - strand at 1859.668 kb on + strand at 1859.668 kb on + strand at 1859.674 kb on + strand at 1859.674 kb on + strand at 1859.674 kb on + strand at 1859.782 kb on + strand, within AO353_08460 at 1859.782 kb on + strand, within AO353_08460 at 1859.782 kb on + strand, within AO353_08460 at 1859.782 kb on + strand, within AO353_08460 at 1859.782 kb on + strand, within AO353_08460 at 1859.783 kb on - strand, within AO353_08460 at 1859.783 kb on - strand, within AO353_08460 at 1859.783 kb on - strand, within AO353_08460 at 1859.783 kb on - strand, within AO353_08460 at 1859.833 kb on + strand, within AO353_08460 at 1859.833 kb on + strand, within AO353_08460 at 1859.833 kb on + strand, within AO353_08460 at 1859.834 kb on - strand, within AO353_08460 at 1859.834 kb on - strand, within AO353_08460 at 1859.834 kb on - strand, within AO353_08460 at 1859.998 kb on + strand, within AO353_08460 at 1859.998 kb on + strand, within AO353_08460 at 1859.998 kb on + strand, within AO353_08460 at 1859.998 kb on + strand, within AO353_08460 at 1859.998 kb on + strand, within AO353_08460 at 1859.998 kb on + strand, within AO353_08460 at 1859.999 kb on - strand, within AO353_08460 at 1859.999 kb on - strand, within AO353_08460 at 1859.999 kb on - strand, within AO353_08460 at 1859.999 kb on - strand, within AO353_08460 at 1860.031 kb on + strand, within AO353_08460 at 1860.031 kb on + strand, within AO353_08460 at 1860.031 kb on + strand, within AO353_08460 at 1860.032 kb on - strand, within AO353_08460 at 1860.032 kb on - strand, within AO353_08460 at 1860.032 kb on - strand, within AO353_08460 at 1860.032 kb on - strand, within AO353_08460 at 1860.043 kb on - strand, within AO353_08460 at 1860.079 kb on + strand, within AO353_08460 at 1860.080 kb on - strand, within AO353_08460 at 1860.080 kb on - strand, within AO353_08460 at 1860.080 kb on - strand, within AO353_08460 at 1860.080 kb on - strand, within AO353_08460 at 1860.080 kb on - strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.124 kb on + strand, within AO353_08460 at 1860.125 kb on - strand, within AO353_08460 at 1860.125 kb on - strand, within AO353_08460 at 1860.125 kb on - strand, within AO353_08460 at 1860.125 kb on - strand, within AO353_08460 at 1860.125 kb on - strand, within AO353_08460 at 1860.125 kb on - strand, within AO353_08460 at 1860.125 kb on - strand, within AO353_08460 at 1860.125 kb on - strand, within AO353_08460 at 1860.125 kb on - strand, within AO353_08460 at 1860.125 kb on - strand, within AO353_08460 at 1860.224 kb on + strand, within AO353_08460 at 1860.224 kb on + strand, within AO353_08460 at 1860.236 kb on + strand, within AO353_08460 at 1860.236 kb on + strand, within AO353_08460 at 1860.237 kb on - strand, within AO353_08460 at 1860.305 kb on + strand, within AO353_08460 at 1860.305 kb on + strand, within AO353_08460 at 1860.305 kb on + strand, within AO353_08460 at 1860.306 kb on - strand, within AO353_08460 at 1860.306 kb on - strand, within AO353_08460 at 1860.306 kb on - strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.337 kb on + strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.338 kb on - strand, within AO353_08460 at 1860.365 kb on + strand, within AO353_08460 at 1860.365 kb on + strand, within AO353_08460 at 1860.366 kb on - strand, within AO353_08460 at 1860.390 kb on + strand at 1860.390 kb on + strand at 1860.390 kb on + strand at 1860.390 kb on + strand at 1860.390 kb on + strand at 1860.390 kb on + strand at 1860.390 kb on + strand at 1860.391 kb on - strand at 1860.451 kb on + strand at 1860.538 kb on + strand at 1860.538 kb on + strand at 1860.538 kb on + strand at 1860.538 kb on + strand at 1860.538 kb on + strand at 1860.539 kb on - strand at 1860.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,857,832 - +1.5 1,857,832 - +3.7 1,857,832 - +5.2 1,857,832 - +5.6 1,857,832 - +1.7 1,857,832 - +0.1 1,857,832 - +1.4 1,857,877 - +2.9 1,857,877 - +3.2 1,857,877 - +0.3 1,857,877 - -1.5 1,857,877 - +1.0 1,857,877 - -1.6 1,857,877 - +0.6 1,857,877 - +1.5 1,857,877 - +0.3 1,857,892 - +0.2 1,857,892 - -0.8 1,857,892 - -2.5 1,857,892 - -1.1 1,857,931 - -1.1 1,858,720 - +1.5 1,858,733 - -0.7 1,858,944 + AO353_08455 0.18 +2.5 1,858,945 - AO353_08455 0.18 -1.2 1,858,948 + AO353_08455 0.19 +1.5 1,858,948 + AO353_08455 0.19 +0.6 1,858,949 - AO353_08455 0.19 -2.0 1,858,949 - AO353_08455 0.19 +3.6 1,858,949 - AO353_08455 0.19 -0.9 1,858,949 - AO353_08455 0.19 -1.0 1,858,949 - AO353_08455 0.19 +1.4 1,858,949 - AO353_08455 0.19 +0.1 1,858,949 - AO353_08455 0.19 +0.5 1,858,949 - AO353_08455 0.19 -1.0 1,858,949 - AO353_08455 0.19 +2.2 1,858,964 + AO353_08455 0.21 +4.0 1,858,964 + AO353_08455 0.21 +6.8 1,858,964 + AO353_08455 0.21 +5.1 1,858,964 + AO353_08455 0.21 +5.6 1,858,964 + AO353_08455 0.21 +3.7 1,858,964 + AO353_08455 0.21 +3.5 1,858,964 + AO353_08455 0.21 +4.3 1,858,965 - AO353_08455 0.21 +0.2 1,858,965 - AO353_08455 0.21 +0.3 1,858,965 - AO353_08455 0.21 +0.3 1,859,010 + AO353_08455 0.26 +2.1 1,859,010 + AO353_08455 0.26 +4.9 1,859,010 + AO353_08455 0.26 +1.9 1,859,010 + AO353_08455 0.26 -0.3 1,859,010 + AO353_08455 0.26 +2.0 1,859,010 + AO353_08455 0.26 +3.1 1,859,010 + AO353_08455 0.26 +5.0 1,859,011 - AO353_08455 0.27 -1.1 1,859,011 - AO353_08455 0.27 -2.2 1,859,011 - AO353_08455 0.27 +1.0 1,859,181 - AO353_08455 0.48 -0.1 1,859,181 - AO353_08455 0.48 -1.5 1,859,569 + +1.6 1,859,569 + -0.1 1,859,569 + -0.3 1,859,569 + +1.2 1,859,570 - +0.4 1,859,570 - -0.1 1,859,570 - +0.2 1,859,570 - -1.8 1,859,570 - -2.7 1,859,570 - -0.2 1,859,600 + +0.9 1,859,600 + +3.3 1,859,600 + +0.7 1,859,600 + +2.3 1,859,600 + +1.6 1,859,600 + -1.0 1,859,600 + -0.5 1,859,600 + +3.0 1,859,600 + +1.1 1,859,601 - -0.7 1,859,601 - -0.4 1,859,601 - -0.3 1,859,601 - +0.1 1,859,601 - -2.0 1,859,601 - -0.1 1,859,601 - -1.5 1,859,601 - -2.0 1,859,601 - +1.6 1,859,668 + -1.5 1,859,668 + +1.9 1,859,674 + -1.2 1,859,674 + -0.4 1,859,674 + +1.3 1,859,782 + AO353_08460 0.10 -0.3 1,859,782 + AO353_08460 0.10 +1.3 1,859,782 + AO353_08460 0.10 +0.3 1,859,782 + AO353_08460 0.10 -0.6 1,859,782 + AO353_08460 0.10 -0.7 1,859,783 - AO353_08460 0.10 -1.0 1,859,783 - AO353_08460 0.10 -0.5 1,859,783 - AO353_08460 0.10 -1.3 1,859,783 - AO353_08460 0.10 -0.7 1,859,833 + AO353_08460 0.17 -1.5 1,859,833 + AO353_08460 0.17 -2.1 1,859,833 + AO353_08460 0.17 +1.6 1,859,834 - AO353_08460 0.17 +0.4 1,859,834 - AO353_08460 0.17 +0.0 1,859,834 - AO353_08460 0.17 +2.8 1,859,998 + AO353_08460 0.39 -0.5 1,859,998 + AO353_08460 0.39 -1.1 1,859,998 + AO353_08460 0.39 -0.6 1,859,998 + AO353_08460 0.39 +0.7 1,859,998 + AO353_08460 0.39 -0.5 1,859,998 + AO353_08460 0.39 +0.5 1,859,999 - AO353_08460 0.39 +0.8 1,859,999 - AO353_08460 0.39 -2.1 1,859,999 - AO353_08460 0.39 -1.2 1,859,999 - AO353_08460 0.39 -0.7 1,860,031 + AO353_08460 0.43 +0.4 1,860,031 + AO353_08460 0.43 +1.1 1,860,031 + AO353_08460 0.43 -0.3 1,860,032 - AO353_08460 0.44 +0.3 1,860,032 - AO353_08460 0.44 -0.0 1,860,032 - AO353_08460 0.44 +0.1 1,860,032 - AO353_08460 0.44 +1.2 1,860,043 - AO353_08460 0.45 -0.7 1,860,079 + AO353_08460 0.50 +3.9 1,860,080 - AO353_08460 0.50 +2.2 1,860,080 - AO353_08460 0.50 -0.0 1,860,080 - AO353_08460 0.50 +0.3 1,860,080 - AO353_08460 0.50 -1.1 1,860,080 - AO353_08460 0.50 +1.6 1,860,124 + AO353_08460 0.56 -0.1 1,860,124 + AO353_08460 0.56 +1.1 1,860,124 + AO353_08460 0.56 -0.8 1,860,124 + AO353_08460 0.56 -0.0 1,860,124 + AO353_08460 0.56 -1.5 1,860,124 + AO353_08460 0.56 +0.7 1,860,124 + AO353_08460 0.56 -0.1 1,860,124 + AO353_08460 0.56 -0.3 1,860,124 + AO353_08460 0.56 -1.7 1,860,124 + AO353_08460 0.56 -0.6 1,860,124 + AO353_08460 0.56 -1.4 1,860,124 + AO353_08460 0.56 -2.1 1,860,125 - AO353_08460 0.56 +1.2 1,860,125 - AO353_08460 0.56 -0.1 1,860,125 - AO353_08460 0.56 -0.3 1,860,125 - AO353_08460 0.56 -0.0 1,860,125 - AO353_08460 0.56 -1.4 1,860,125 - AO353_08460 0.56 -0.6 1,860,125 - AO353_08460 0.56 -0.6 1,860,125 - AO353_08460 0.56 -0.3 1,860,125 - AO353_08460 0.56 -0.5 1,860,125 - AO353_08460 0.56 -0.7 1,860,224 + AO353_08460 0.69 +0.3 1,860,224 + AO353_08460 0.69 +0.0 1,860,236 + AO353_08460 0.71 -0.2 1,860,236 + AO353_08460 0.71 +2.6 1,860,237 - AO353_08460 0.71 +0.6 1,860,305 + AO353_08460 0.80 -0.8 1,860,305 + AO353_08460 0.80 +0.0 1,860,305 + AO353_08460 0.80 +0.5 1,860,306 - AO353_08460 0.80 +3.1 1,860,306 - AO353_08460 0.80 -1.0 1,860,306 - AO353_08460 0.80 +1.9 1,860,337 + AO353_08460 0.84 +1.3 1,860,337 + AO353_08460 0.84 -1.1 1,860,337 + AO353_08460 0.84 -0.5 1,860,337 + AO353_08460 0.84 +0.7 1,860,337 + AO353_08460 0.84 -1.6 1,860,337 + AO353_08460 0.84 -0.4 1,860,337 + AO353_08460 0.84 -1.7 1,860,337 + AO353_08460 0.84 +1.3 1,860,337 + AO353_08460 0.84 +1.6 1,860,337 + AO353_08460 0.84 -1.3 1,860,337 + AO353_08460 0.84 +1.1 1,860,337 + AO353_08460 0.84 -1.1 1,860,337 + AO353_08460 0.84 -0.3 1,860,337 + AO353_08460 0.84 +0.3 1,860,337 + AO353_08460 0.84 +0.2 1,860,337 + AO353_08460 0.84 +1.3 1,860,337 + AO353_08460 0.84 +0.4 1,860,337 + AO353_08460 0.84 +0.1 1,860,337 + AO353_08460 0.84 +0.1 1,860,337 + AO353_08460 0.84 +0.7 1,860,337 + AO353_08460 0.84 +0.2 1,860,337 + AO353_08460 0.84 +4.1 1,860,338 - AO353_08460 0.84 -1.1 1,860,338 - AO353_08460 0.84 +3.1 1,860,338 - AO353_08460 0.84 -1.4 1,860,338 - AO353_08460 0.84 +0.3 1,860,338 - AO353_08460 0.84 -0.1 1,860,338 - AO353_08460 0.84 -1.2 1,860,338 - AO353_08460 0.84 +3.9 1,860,338 - AO353_08460 0.84 +0.2 1,860,338 - AO353_08460 0.84 +0.3 1,860,338 - AO353_08460 0.84 -0.9 1,860,338 - AO353_08460 0.84 +1.2 1,860,338 - AO353_08460 0.84 +1.2 1,860,338 - AO353_08460 0.84 +2.4 1,860,338 - AO353_08460 0.84 -0.5 1,860,338 - AO353_08460 0.84 +0.9 1,860,338 - AO353_08460 0.84 -0.3 1,860,338 - AO353_08460 0.84 +0.1 1,860,338 - AO353_08460 0.84 -0.8 1,860,338 - AO353_08460 0.84 +0.7 1,860,338 - AO353_08460 0.84 +0.2 1,860,338 - AO353_08460 0.84 +2.4 1,860,338 - AO353_08460 0.84 -1.0 1,860,338 - AO353_08460 0.84 +0.1 1,860,338 - AO353_08460 0.84 -1.3 1,860,338 - AO353_08460 0.84 +1.9 1,860,365 + AO353_08460 0.88 -1.0 1,860,365 + AO353_08460 0.88 -0.3 1,860,366 - AO353_08460 0.88 +0.4 1,860,390 + -0.6 1,860,390 + +0.8 1,860,390 + +0.1 1,860,390 + +0.7 1,860,390 + +0.4 1,860,390 + -0.6 1,860,390 + -0.5 1,860,391 - -1.3 1,860,451 + +1.8 1,860,538 + -0.3 1,860,538 + +0.4 1,860,538 + -0.1 1,860,538 + -0.4 1,860,538 + +2.6 1,860,539 - +1.1 1,860,539 - -0.7
Or see this region's nucleotide sequence