Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07470

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07460 and AO353_07465 overlap by 8 nucleotidesAO353_07465 and AO353_07470 are separated by 254 nucleotidesAO353_07470 and AO353_07475 overlap by 4 nucleotidesAO353_07475 and AO353_07480 are separated by 101 nucleotides AO353_07460: AO353_07460 - DNA-binding protein, at 1,642,432 to 1,642,752 _07460 AO353_07465: AO353_07465 - addiction module toxin RelE, at 1,642,745 to 1,643,101 _07465 AO353_07470: AO353_07470 - acetylornithine aminotransferase, at 1,643,356 to 1,644,633 _07470 AO353_07475: AO353_07475 - sulfurase, at 1,644,630 to 1,645,328 _07475 AO353_07480: AO353_07480 - LysR family transcriptional regulator, at 1,645,430 to 1,646,359 _07480 Position (kb) 1643 1644 1645Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1642.442 kb on - strandat 1642.442 kb on - strandat 1642.530 kb on + strand, within AO353_07460at 1642.531 kb on - strand, within AO353_07460at 1642.531 kb on - strand, within AO353_07460at 1642.550 kb on + strand, within AO353_07460at 1642.551 kb on - strand, within AO353_07460at 1642.581 kb on + strand, within AO353_07460at 1642.581 kb on + strand, within AO353_07460at 1642.582 kb on - strand, within AO353_07460at 1642.677 kb on + strand, within AO353_07460at 1642.746 kb on + strandat 1642.746 kb on + strandat 1642.746 kb on + strandat 1642.747 kb on - strandat 1642.747 kb on - strandat 1642.747 kb on - strandat 1642.757 kb on + strandat 1642.757 kb on + strandat 1642.757 kb on + strandat 1642.757 kb on + strandat 1642.757 kb on + strandat 1642.757 kb on + strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.758 kb on - strandat 1642.777 kb on + strandat 1642.818 kb on + strand, within AO353_07465at 1642.818 kb on + strand, within AO353_07465at 1642.818 kb on + strand, within AO353_07465at 1642.819 kb on - strand, within AO353_07465at 1642.819 kb on - strand, within AO353_07465at 1642.819 kb on - strand, within AO353_07465at 1642.899 kb on + strand, within AO353_07465at 1642.909 kb on - strand, within AO353_07465at 1643.003 kb on - strand, within AO353_07465at 1643.069 kb on - strandat 1643.139 kb on - strandat 1643.139 kb on - strandat 1643.140 kb on + strandat 1643.244 kb on + strandat 1643.245 kb on - strandat 1643.313 kb on + strandat 1643.314 kb on - strandat 1643.314 kb on - strandat 1643.314 kb on - strandat 1643.314 kb on - strandat 1643.315 kb on + strandat 1643.315 kb on + strandat 1643.315 kb on + strandat 1643.337 kb on + strandat 1643.337 kb on + strandat 1643.337 kb on + strandat 1643.337 kb on + strandat 1643.337 kb on + strandat 1643.338 kb on - strandat 1643.338 kb on - strandat 1643.338 kb on - strandat 1643.338 kb on - strandat 1643.338 kb on - strandat 1643.442 kb on + strandat 1643.519 kb on + strand, within AO353_07470at 1643.519 kb on + strand, within AO353_07470at 1643.519 kb on + strand, within AO353_07470at 1643.519 kb on + strand, within AO353_07470at 1643.519 kb on + strand, within AO353_07470at 1643.519 kb on + strand, within AO353_07470at 1643.519 kb on + strand, within AO353_07470at 1643.519 kb on + strand, within AO353_07470at 1643.520 kb on - strand, within AO353_07470at 1643.520 kb on - strand, within AO353_07470at 1643.520 kb on - strand, within AO353_07470at 1643.861 kb on + strand, within AO353_07470at 1643.862 kb on - strand, within AO353_07470at 1643.862 kb on - strand, within AO353_07470at 1643.947 kb on + strand, within AO353_07470at 1643.947 kb on + strand, within AO353_07470at 1643.947 kb on + strand, within AO353_07470at 1643.948 kb on - strand, within AO353_07470at 1643.948 kb on - strand, within AO353_07470at 1643.948 kb on - strand, within AO353_07470at 1643.969 kb on + strand, within AO353_07470at 1643.969 kb on + strand, within AO353_07470at 1643.969 kb on + strand, within AO353_07470at 1643.969 kb on + strand, within AO353_07470at 1643.969 kb on + strand, within AO353_07470at 1643.969 kb on + strand, within AO353_07470at 1643.969 kb on + strand, within AO353_07470at 1643.970 kb on - strand, within AO353_07470at 1643.970 kb on - strand, within AO353_07470at 1644.024 kb on + strand, within AO353_07470at 1644.024 kb on + strand, within AO353_07470at 1644.024 kb on + strand, within AO353_07470at 1644.024 kb on + strand, within AO353_07470at 1644.025 kb on - strand, within AO353_07470at 1644.028 kb on + strand, within AO353_07470at 1644.028 kb on + strand, within AO353_07470at 1644.028 kb on + strand, within AO353_07470at 1644.028 kb on + strand, within AO353_07470at 1644.029 kb on - strand, within AO353_07470at 1644.029 kb on - strand, within AO353_07470at 1644.029 kb on - strand, within AO353_07470at 1644.029 kb on - strand, within AO353_07470at 1644.029 kb on - strand, within AO353_07470at 1644.043 kb on + strand, within AO353_07470at 1644.044 kb on - strand, within AO353_07470at 1644.044 kb on - strand, within AO353_07470at 1644.055 kb on + strand, within AO353_07470at 1644.055 kb on + strand, within AO353_07470at 1644.055 kb on + strand, within AO353_07470at 1644.055 kb on + strand, within AO353_07470at 1644.055 kb on + strand, within AO353_07470at 1644.055 kb on + strand, within AO353_07470at 1644.055 kb on + strand, within AO353_07470at 1644.056 kb on - strand, within AO353_07470at 1644.056 kb on - strand, within AO353_07470at 1644.056 kb on - strand, within AO353_07470at 1644.056 kb on - strand, within AO353_07470at 1644.056 kb on - strand, within AO353_07470at 1644.056 kb on - strand, within AO353_07470at 1644.056 kb on - strand, within AO353_07470at 1644.056 kb on - strand, within AO353_07470at 1644.056 kb on - strand, within AO353_07470at 1644.168 kb on + strand, within AO353_07470at 1644.168 kb on + strand, within AO353_07470at 1644.169 kb on - strand, within AO353_07470at 1644.275 kb on + strand, within AO353_07470at 1644.275 kb on + strand, within AO353_07470at 1644.275 kb on + strand, within AO353_07470at 1644.275 kb on + strand, within AO353_07470at 1644.275 kb on + strand, within AO353_07470at 1644.276 kb on - strand, within AO353_07470at 1644.276 kb on - strand, within AO353_07470at 1644.337 kb on - strand, within AO353_07470at 1644.408 kb on + strand, within AO353_07470at 1644.409 kb on - strand, within AO353_07470at 1644.452 kb on + strand, within AO353_07470at 1644.453 kb on - strand, within AO353_07470at 1644.716 kb on + strand, within AO353_07475at 1644.716 kb on + strand, within AO353_07475at 1644.717 kb on - strand, within AO353_07475at 1644.717 kb on - strand, within AO353_07475at 1644.717 kb on - strand, within AO353_07475at 1644.790 kb on + strand, within AO353_07475at 1644.829 kb on + strand, within AO353_07475at 1644.893 kb on - strand, within AO353_07475at 1644.914 kb on + strand, within AO353_07475at 1644.915 kb on - strand, within AO353_07475at 1644.997 kb on - strand, within AO353_07475at 1644.997 kb on - strand, within AO353_07475at 1644.997 kb on - strand, within AO353_07475at 1644.997 kb on - strand, within AO353_07475at 1644.997 kb on - strand, within AO353_07475at 1645.022 kb on + strand, within AO353_07475at 1645.022 kb on + strand, within AO353_07475at 1645.022 kb on + strand, within AO353_07475at 1645.023 kb on - strand, within AO353_07475at 1645.123 kb on + strand, within AO353_07475at 1645.124 kb on - strand, within AO353_07475at 1645.124 kb on - strand, within AO353_07475at 1645.129 kb on + strand, within AO353_07475at 1645.129 kb on + strand, within AO353_07475at 1645.130 kb on - strand, within AO353_07475at 1645.130 kb on - strand, within AO353_07475at 1645.130 kb on - strand, within AO353_07475at 1645.130 kb on - strand, within AO353_07475at 1645.130 kb on - strand, within AO353_07475at 1645.130 kb on - strand, within AO353_07475at 1645.130 kb on - strand, within AO353_07475at 1645.130 kb on - strand, within AO353_07475at 1645.130 kb on - strand, within AO353_07475at 1645.130 kb on - strand, within AO353_07475at 1645.172 kb on + strand, within AO353_07475at 1645.296 kb on + strandat 1645.296 kb on + strandat 1645.296 kb on + strandat 1645.297 kb on - strandat 1645.300 kb on + strandat 1645.316 kb on - strandat 1645.316 kb on - strandat 1645.323 kb on - strandat 1645.346 kb on + strandat 1645.347 kb on - strandat 1645.371 kb on - strandat 1645.371 kb on - strandat 1645.429 kb on + strandat 1645.466 kb on + strandat 1645.466 kb on + strandat 1645.466 kb on + strandat 1645.466 kb on + strandat 1645.466 kb on + strandat 1645.467 kb on - strandat 1645.467 kb on - strandat 1645.467 kb on - strandat 1645.467 kb on - strandat 1645.585 kb on + strand, within AO353_07480at 1645.586 kb on - strand, within AO353_07480at 1645.586 kb on - strand, within AO353_07480at 1645.615 kb on + strand, within AO353_07480at 1645.615 kb on + strand, within AO353_07480at 1645.615 kb on + strand, within AO353_07480at 1645.615 kb on + strand, within AO353_07480at 1645.615 kb on + strand, within AO353_07480at 1645.616 kb on - strand, within AO353_07480at 1645.616 kb on - strand, within AO353_07480at 1645.616 kb on - strand, within AO353_07480at 1645.616 kb on - strand, within AO353_07480at 1645.616 kb on - strand, within AO353_07480at 1645.616 kb on - strand, within AO353_07480at 1645.616 kb on - strand, within AO353_07480at 1645.616 kb on - strand, within AO353_07480at 1645.616 kb on - strand, within AO353_07480at 1645.622 kb on + strand, within AO353_07480at 1645.622 kb on + strand, within AO353_07480at 1645.622 kb on + strand, within AO353_07480at 1645.622 kb on + strand, within AO353_07480at 1645.622 kb on + strand, within AO353_07480at 1645.622 kb on + strand, within AO353_07480at 1645.623 kb on - strand, within AO353_07480at 1645.623 kb on - strand, within AO353_07480at 1645.623 kb on - strand, within AO353_07480at 1645.623 kb on - strand, within AO353_07480at 1645.623 kb on - strand, within AO353_07480at 1645.623 kb on - strand, within AO353_07480

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,642,442 - -2.0
1,642,442 - -0.3
1,642,530 + AO353_07460 0.31 +0.7
1,642,531 - AO353_07460 0.31 -0.3
1,642,531 - AO353_07460 0.31 -0.8
1,642,550 + AO353_07460 0.37 -1.5
1,642,551 - AO353_07460 0.37 +0.7
1,642,581 + AO353_07460 0.46 -0.5
1,642,581 + AO353_07460 0.46 -0.8
1,642,582 - AO353_07460 0.47 -0.1
1,642,677 + AO353_07460 0.76 -0.4
1,642,746 + +1.7
1,642,746 + +0.3
1,642,746 + +3.4
1,642,747 - +0.4
1,642,747 - +2.0
1,642,747 - +5.4
1,642,757 + -0.7
1,642,757 + -1.2
1,642,757 + -1.1
1,642,757 + +0.6
1,642,757 + -0.1
1,642,757 + -0.9
1,642,758 - -0.3
1,642,758 - -0.1
1,642,758 - -0.1
1,642,758 - -0.1
1,642,758 - -0.4
1,642,758 - +1.1
1,642,758 - +0.2
1,642,758 - -0.4
1,642,758 - +0.7
1,642,758 - -1.5
1,642,758 - -1.3
1,642,758 - +3.3
1,642,758 - -0.9
1,642,758 - -0.3
1,642,777 + +4.2
1,642,818 + AO353_07465 0.20 +0.6
1,642,818 + AO353_07465 0.20 +3.4
1,642,818 + AO353_07465 0.20 +0.2
1,642,819 - AO353_07465 0.21 -0.5
1,642,819 - AO353_07465 0.21 +1.0
1,642,819 - AO353_07465 0.21 -0.5
1,642,899 + AO353_07465 0.43 +0.6
1,642,909 - AO353_07465 0.46 +0.3
1,643,003 - AO353_07465 0.72 -0.3
1,643,069 - -1.3
1,643,139 - +0.1
1,643,139 - -1.2
1,643,140 + -1.4
1,643,244 + -1.0
1,643,245 - -0.9
1,643,313 + -1.9
1,643,314 - -2.1
1,643,314 - +1.1
1,643,314 - +1.2
1,643,314 - -2.1
1,643,315 + +1.1
1,643,315 + -0.7
1,643,315 + +1.1
1,643,337 + +0.3
1,643,337 + +0.1
1,643,337 + +2.3
1,643,337 + +2.3
1,643,337 + +0.5
1,643,338 - -1.6
1,643,338 - -1.3
1,643,338 - +0.3
1,643,338 - +0.5
1,643,338 - -1.3
1,643,442 + -2.4
1,643,519 + AO353_07470 0.13 +0.8
1,643,519 + AO353_07470 0.13 +1.0
1,643,519 + AO353_07470 0.13 -1.1
1,643,519 + AO353_07470 0.13 -1.1
1,643,519 + AO353_07470 0.13 -2.3
1,643,519 + AO353_07470 0.13 +0.3
1,643,519 + AO353_07470 0.13 +0.1
1,643,519 + AO353_07470 0.13 -1.8
1,643,520 - AO353_07470 0.13 -0.3
1,643,520 - AO353_07470 0.13 -1.7
1,643,520 - AO353_07470 0.13 -0.5
1,643,861 + AO353_07470 0.40 -2.8
1,643,862 - AO353_07470 0.40 -2.0
1,643,862 - AO353_07470 0.40 -0.7
1,643,947 + AO353_07470 0.46 +1.9
1,643,947 + AO353_07470 0.46 +0.9
1,643,947 + AO353_07470 0.46 +0.2
1,643,948 - AO353_07470 0.46 +0.4
1,643,948 - AO353_07470 0.46 -1.3
1,643,948 - AO353_07470 0.46 +0.6
1,643,969 + AO353_07470 0.48 -0.8
1,643,969 + AO353_07470 0.48 -1.2
1,643,969 + AO353_07470 0.48 +2.2
1,643,969 + AO353_07470 0.48 -0.7
1,643,969 + AO353_07470 0.48 -0.8
1,643,969 + AO353_07470 0.48 +0.2
1,643,969 + AO353_07470 0.48 -1.0
1,643,970 - AO353_07470 0.48 +0.6
1,643,970 - AO353_07470 0.48 -0.3
1,644,024 + AO353_07470 0.52 -1.3
1,644,024 + AO353_07470 0.52 +0.5
1,644,024 + AO353_07470 0.52 -0.2
1,644,024 + AO353_07470 0.52 -1.0
1,644,025 - AO353_07470 0.52 -1.1
1,644,028 + AO353_07470 0.53 -1.2
1,644,028 + AO353_07470 0.53 -0.5
1,644,028 + AO353_07470 0.53 -0.3
1,644,028 + AO353_07470 0.53 -2.0
1,644,029 - AO353_07470 0.53 -2.5
1,644,029 - AO353_07470 0.53 -1.1
1,644,029 - AO353_07470 0.53 +0.2
1,644,029 - AO353_07470 0.53 -1.0
1,644,029 - AO353_07470 0.53 -2.4
1,644,043 + AO353_07470 0.54 +0.1
1,644,044 - AO353_07470 0.54 -2.2
1,644,044 - AO353_07470 0.54 -2.5
1,644,055 + AO353_07470 0.55 -1.8
1,644,055 + AO353_07470 0.55 -2.2
1,644,055 + AO353_07470 0.55 -1.3
1,644,055 + AO353_07470 0.55 -2.2
1,644,055 + AO353_07470 0.55 -3.4
1,644,055 + AO353_07470 0.55 -1.6
1,644,055 + AO353_07470 0.55 -1.7
1,644,056 - AO353_07470 0.55 -1.3
1,644,056 - AO353_07470 0.55 -0.7
1,644,056 - AO353_07470 0.55 -0.1
1,644,056 - AO353_07470 0.55 -2.2
1,644,056 - AO353_07470 0.55 -1.9
1,644,056 - AO353_07470 0.55 -1.0
1,644,056 - AO353_07470 0.55 -1.4
1,644,056 - AO353_07470 0.55 -1.4
1,644,056 - AO353_07470 0.55 -1.6
1,644,168 + AO353_07470 0.64 +0.1
1,644,168 + AO353_07470 0.64 -1.5
1,644,169 - AO353_07470 0.64 -1.4
1,644,275 + AO353_07470 0.72 -1.1
1,644,275 + AO353_07470 0.72 -0.3
1,644,275 + AO353_07470 0.72 -0.2
1,644,275 + AO353_07470 0.72 -1.8
1,644,275 + AO353_07470 0.72 -2.5
1,644,276 - AO353_07470 0.72 +1.3
1,644,276 - AO353_07470 0.72 -2.3
1,644,337 - AO353_07470 0.77 -1.3
1,644,408 + AO353_07470 0.82 -2.5
1,644,409 - AO353_07470 0.82 -0.1
1,644,452 + AO353_07470 0.86 -2.1
1,644,453 - AO353_07470 0.86 +0.3
1,644,716 + AO353_07475 0.12 -1.5
1,644,716 + AO353_07475 0.12 -1.5
1,644,717 - AO353_07475 0.12 -0.7
1,644,717 - AO353_07475 0.12 -1.8
1,644,717 - AO353_07475 0.12 -2.1
1,644,790 + AO353_07475 0.23 -0.3
1,644,829 + AO353_07475 0.28 -1.8
1,644,893 - AO353_07475 0.38 -2.1
1,644,914 + AO353_07475 0.41 -2.0
1,644,915 - AO353_07475 0.41 -1.1
1,644,997 - AO353_07475 0.53 -0.9
1,644,997 - AO353_07475 0.53 +0.1
1,644,997 - AO353_07475 0.53 -3.2
1,644,997 - AO353_07475 0.53 -0.3
1,644,997 - AO353_07475 0.53 -1.0
1,645,022 + AO353_07475 0.56 -1.7
1,645,022 + AO353_07475 0.56 -2.1
1,645,022 + AO353_07475 0.56 +0.7
1,645,023 - AO353_07475 0.56 -0.7
1,645,123 + AO353_07475 0.71 +0.1
1,645,124 - AO353_07475 0.71 -2.2
1,645,124 - AO353_07475 0.71 -1.6
1,645,129 + AO353_07475 0.71 -2.3
1,645,129 + AO353_07475 0.71 +0.3
1,645,130 - AO353_07475 0.72 -0.8
1,645,130 - AO353_07475 0.72 -2.6
1,645,130 - AO353_07475 0.72 -0.5
1,645,130 - AO353_07475 0.72 -2.5
1,645,130 - AO353_07475 0.72 -0.8
1,645,130 - AO353_07475 0.72 -1.0
1,645,130 - AO353_07475 0.72 -1.0
1,645,130 - AO353_07475 0.72 -2.1
1,645,130 - AO353_07475 0.72 -2.6
1,645,130 - AO353_07475 0.72 +0.3
1,645,172 + AO353_07475 0.78 +0.6
1,645,296 + -0.8
1,645,296 + +0.3
1,645,296 + -0.7
1,645,297 - -0.0
1,645,300 + -0.8
1,645,316 - -1.2
1,645,316 - -3.1
1,645,323 - -0.4
1,645,346 + -1.1
1,645,347 - -1.5
1,645,371 - -0.7
1,645,371 - +0.5
1,645,429 + +1.5
1,645,466 + -3.3
1,645,466 + -1.2
1,645,466 + -1.2
1,645,466 + -1.7
1,645,466 + -1.6
1,645,467 - -1.5
1,645,467 - -1.3
1,645,467 - -1.7
1,645,467 - -1.9
1,645,585 + AO353_07480 0.17 -2.6
1,645,586 - AO353_07480 0.17 -2.3
1,645,586 - AO353_07480 0.17 +0.5
1,645,615 + AO353_07480 0.20 -0.9
1,645,615 + AO353_07480 0.20 -2.1
1,645,615 + AO353_07480 0.20 -2.0
1,645,615 + AO353_07480 0.20 -1.6
1,645,615 + AO353_07480 0.20 +0.1
1,645,616 - AO353_07480 0.20 -1.3
1,645,616 - AO353_07480 0.20 -2.6
1,645,616 - AO353_07480 0.20 -2.6
1,645,616 - AO353_07480 0.20 -0.5
1,645,616 - AO353_07480 0.20 -1.1
1,645,616 - AO353_07480 0.20 -0.9
1,645,616 - AO353_07480 0.20 -2.0
1,645,616 - AO353_07480 0.20 +0.1
1,645,616 - AO353_07480 0.20 +0.2
1,645,622 + AO353_07480 0.21 -1.5
1,645,622 + AO353_07480 0.21 -0.1
1,645,622 + AO353_07480 0.21 -2.0
1,645,622 + AO353_07480 0.21 -0.4
1,645,622 + AO353_07480 0.21 -2.5
1,645,622 + AO353_07480 0.21 -1.2
1,645,623 - AO353_07480 0.21 -0.9
1,645,623 - AO353_07480 0.21 -0.5
1,645,623 - AO353_07480 0.21 -1.2
1,645,623 - AO353_07480 0.21 -1.1
1,645,623 - AO353_07480 0.21 -1.9
1,645,623 - AO353_07480 0.21 -1.1

Or see this region's nucleotide sequence