Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07460 and AO353_07465 overlap by 8 nucleotides AO353_07465 and AO353_07470 are separated by 254 nucleotides AO353_07470 and AO353_07475 overlap by 4 nucleotides AO353_07475 and AO353_07480 are separated by 101 nucleotides
AO353_07460: AO353_07460 - DNA-binding protein, at 1,642,432 to 1,642,752
_07460
AO353_07465: AO353_07465 - addiction module toxin RelE, at 1,642,745 to 1,643,101
_07465
AO353_07470: AO353_07470 - acetylornithine aminotransferase, at 1,643,356 to 1,644,633
_07470
AO353_07475: AO353_07475 - sulfurase, at 1,644,630 to 1,645,328
_07475
AO353_07480: AO353_07480 - LysR family transcriptional regulator, at 1,645,430 to 1,646,359
_07480
Position (kb)
1643
1644
1645 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1642.442 kb on - strand at 1642.442 kb on - strand at 1642.530 kb on + strand, within AO353_07460 at 1642.531 kb on - strand, within AO353_07460 at 1642.531 kb on - strand, within AO353_07460 at 1642.550 kb on + strand, within AO353_07460 at 1642.551 kb on - strand, within AO353_07460 at 1642.581 kb on + strand, within AO353_07460 at 1642.581 kb on + strand, within AO353_07460 at 1642.582 kb on - strand, within AO353_07460 at 1642.677 kb on + strand, within AO353_07460 at 1642.746 kb on + strand at 1642.746 kb on + strand at 1642.746 kb on + strand at 1642.747 kb on - strand at 1642.747 kb on - strand at 1642.747 kb on - strand at 1642.757 kb on + strand at 1642.757 kb on + strand at 1642.757 kb on + strand at 1642.757 kb on + strand at 1642.757 kb on + strand at 1642.757 kb on + strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.758 kb on - strand at 1642.777 kb on + strand at 1642.818 kb on + strand, within AO353_07465 at 1642.818 kb on + strand, within AO353_07465 at 1642.818 kb on + strand, within AO353_07465 at 1642.819 kb on - strand, within AO353_07465 at 1642.819 kb on - strand, within AO353_07465 at 1642.819 kb on - strand, within AO353_07465 at 1642.899 kb on + strand, within AO353_07465 at 1642.909 kb on - strand, within AO353_07465 at 1643.003 kb on - strand, within AO353_07465 at 1643.069 kb on - strand at 1643.139 kb on - strand at 1643.139 kb on - strand at 1643.140 kb on + strand at 1643.244 kb on + strand at 1643.245 kb on - strand at 1643.313 kb on + strand at 1643.314 kb on - strand at 1643.314 kb on - strand at 1643.314 kb on - strand at 1643.314 kb on - strand at 1643.315 kb on + strand at 1643.315 kb on + strand at 1643.315 kb on + strand at 1643.337 kb on + strand at 1643.337 kb on + strand at 1643.337 kb on + strand at 1643.337 kb on + strand at 1643.337 kb on + strand at 1643.338 kb on - strand at 1643.338 kb on - strand at 1643.338 kb on - strand at 1643.338 kb on - strand at 1643.338 kb on - strand at 1643.442 kb on + strand at 1643.519 kb on + strand, within AO353_07470 at 1643.519 kb on + strand, within AO353_07470 at 1643.519 kb on + strand, within AO353_07470 at 1643.519 kb on + strand, within AO353_07470 at 1643.519 kb on + strand, within AO353_07470 at 1643.519 kb on + strand, within AO353_07470 at 1643.519 kb on + strand, within AO353_07470 at 1643.519 kb on + strand, within AO353_07470 at 1643.520 kb on - strand, within AO353_07470 at 1643.520 kb on - strand, within AO353_07470 at 1643.520 kb on - strand, within AO353_07470 at 1643.861 kb on + strand, within AO353_07470 at 1643.862 kb on - strand, within AO353_07470 at 1643.862 kb on - strand, within AO353_07470 at 1643.947 kb on + strand, within AO353_07470 at 1643.947 kb on + strand, within AO353_07470 at 1643.947 kb on + strand, within AO353_07470 at 1643.948 kb on - strand, within AO353_07470 at 1643.948 kb on - strand, within AO353_07470 at 1643.948 kb on - strand, within AO353_07470 at 1643.969 kb on + strand, within AO353_07470 at 1643.969 kb on + strand, within AO353_07470 at 1643.969 kb on + strand, within AO353_07470 at 1643.969 kb on + strand, within AO353_07470 at 1643.969 kb on + strand, within AO353_07470 at 1643.969 kb on + strand, within AO353_07470 at 1643.969 kb on + strand, within AO353_07470 at 1643.970 kb on - strand, within AO353_07470 at 1643.970 kb on - strand, within AO353_07470 at 1644.024 kb on + strand, within AO353_07470 at 1644.024 kb on + strand, within AO353_07470 at 1644.024 kb on + strand, within AO353_07470 at 1644.024 kb on + strand, within AO353_07470 at 1644.025 kb on - strand, within AO353_07470 at 1644.028 kb on + strand, within AO353_07470 at 1644.028 kb on + strand, within AO353_07470 at 1644.028 kb on + strand, within AO353_07470 at 1644.028 kb on + strand, within AO353_07470 at 1644.029 kb on - strand, within AO353_07470 at 1644.029 kb on - strand, within AO353_07470 at 1644.029 kb on - strand, within AO353_07470 at 1644.029 kb on - strand, within AO353_07470 at 1644.029 kb on - strand, within AO353_07470 at 1644.043 kb on + strand, within AO353_07470 at 1644.044 kb on - strand, within AO353_07470 at 1644.044 kb on - strand, within AO353_07470 at 1644.055 kb on + strand, within AO353_07470 at 1644.055 kb on + strand, within AO353_07470 at 1644.055 kb on + strand, within AO353_07470 at 1644.055 kb on + strand, within AO353_07470 at 1644.055 kb on + strand, within AO353_07470 at 1644.055 kb on + strand, within AO353_07470 at 1644.055 kb on + strand, within AO353_07470 at 1644.056 kb on - strand, within AO353_07470 at 1644.056 kb on - strand, within AO353_07470 at 1644.056 kb on - strand, within AO353_07470 at 1644.056 kb on - strand, within AO353_07470 at 1644.056 kb on - strand, within AO353_07470 at 1644.056 kb on - strand, within AO353_07470 at 1644.056 kb on - strand, within AO353_07470 at 1644.056 kb on - strand, within AO353_07470 at 1644.056 kb on - strand, within AO353_07470 at 1644.168 kb on + strand, within AO353_07470 at 1644.168 kb on + strand, within AO353_07470 at 1644.169 kb on - strand, within AO353_07470 at 1644.275 kb on + strand, within AO353_07470 at 1644.275 kb on + strand, within AO353_07470 at 1644.275 kb on + strand, within AO353_07470 at 1644.275 kb on + strand, within AO353_07470 at 1644.275 kb on + strand, within AO353_07470 at 1644.276 kb on - strand, within AO353_07470 at 1644.276 kb on - strand, within AO353_07470 at 1644.337 kb on - strand, within AO353_07470 at 1644.408 kb on + strand, within AO353_07470 at 1644.409 kb on - strand, within AO353_07470 at 1644.452 kb on + strand, within AO353_07470 at 1644.453 kb on - strand, within AO353_07470 at 1644.716 kb on + strand, within AO353_07475 at 1644.716 kb on + strand, within AO353_07475 at 1644.717 kb on - strand, within AO353_07475 at 1644.717 kb on - strand, within AO353_07475 at 1644.717 kb on - strand, within AO353_07475 at 1644.790 kb on + strand, within AO353_07475 at 1644.829 kb on + strand, within AO353_07475 at 1644.893 kb on - strand, within AO353_07475 at 1644.914 kb on + strand, within AO353_07475 at 1644.915 kb on - strand, within AO353_07475 at 1644.997 kb on - strand, within AO353_07475 at 1644.997 kb on - strand, within AO353_07475 at 1644.997 kb on - strand, within AO353_07475 at 1644.997 kb on - strand, within AO353_07475 at 1644.997 kb on - strand, within AO353_07475 at 1645.022 kb on + strand, within AO353_07475 at 1645.022 kb on + strand, within AO353_07475 at 1645.022 kb on + strand, within AO353_07475 at 1645.023 kb on - strand, within AO353_07475 at 1645.123 kb on + strand, within AO353_07475 at 1645.124 kb on - strand, within AO353_07475 at 1645.124 kb on - strand, within AO353_07475 at 1645.129 kb on + strand, within AO353_07475 at 1645.129 kb on + strand, within AO353_07475 at 1645.130 kb on - strand, within AO353_07475 at 1645.130 kb on - strand, within AO353_07475 at 1645.130 kb on - strand, within AO353_07475 at 1645.130 kb on - strand, within AO353_07475 at 1645.130 kb on - strand, within AO353_07475 at 1645.130 kb on - strand, within AO353_07475 at 1645.130 kb on - strand, within AO353_07475 at 1645.130 kb on - strand, within AO353_07475 at 1645.130 kb on - strand, within AO353_07475 at 1645.130 kb on - strand, within AO353_07475 at 1645.172 kb on + strand, within AO353_07475 at 1645.296 kb on + strand at 1645.296 kb on + strand at 1645.296 kb on + strand at 1645.297 kb on - strand at 1645.300 kb on + strand at 1645.316 kb on - strand at 1645.316 kb on - strand at 1645.323 kb on - strand at 1645.346 kb on + strand at 1645.347 kb on - strand at 1645.371 kb on - strand at 1645.371 kb on - strand at 1645.429 kb on + strand at 1645.466 kb on + strand at 1645.466 kb on + strand at 1645.466 kb on + strand at 1645.466 kb on + strand at 1645.466 kb on + strand at 1645.467 kb on - strand at 1645.467 kb on - strand at 1645.467 kb on - strand at 1645.467 kb on - strand at 1645.585 kb on + strand, within AO353_07480 at 1645.586 kb on - strand, within AO353_07480 at 1645.586 kb on - strand, within AO353_07480 at 1645.615 kb on + strand, within AO353_07480 at 1645.615 kb on + strand, within AO353_07480 at 1645.615 kb on + strand, within AO353_07480 at 1645.615 kb on + strand, within AO353_07480 at 1645.615 kb on + strand, within AO353_07480 at 1645.616 kb on - strand, within AO353_07480 at 1645.616 kb on - strand, within AO353_07480 at 1645.616 kb on - strand, within AO353_07480 at 1645.616 kb on - strand, within AO353_07480 at 1645.616 kb on - strand, within AO353_07480 at 1645.616 kb on - strand, within AO353_07480 at 1645.616 kb on - strand, within AO353_07480 at 1645.616 kb on - strand, within AO353_07480 at 1645.616 kb on - strand, within AO353_07480 at 1645.622 kb on + strand, within AO353_07480 at 1645.622 kb on + strand, within AO353_07480 at 1645.622 kb on + strand, within AO353_07480 at 1645.622 kb on + strand, within AO353_07480 at 1645.622 kb on + strand, within AO353_07480 at 1645.622 kb on + strand, within AO353_07480 at 1645.623 kb on - strand, within AO353_07480 at 1645.623 kb on - strand, within AO353_07480 at 1645.623 kb on - strand, within AO353_07480 at 1645.623 kb on - strand, within AO353_07480 at 1645.623 kb on - strand, within AO353_07480 at 1645.623 kb on - strand, within AO353_07480
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,642,442 - -2.0 1,642,442 - -0.3 1,642,530 + AO353_07460 0.31 +0.7 1,642,531 - AO353_07460 0.31 -0.3 1,642,531 - AO353_07460 0.31 -0.8 1,642,550 + AO353_07460 0.37 -1.5 1,642,551 - AO353_07460 0.37 +0.7 1,642,581 + AO353_07460 0.46 -0.5 1,642,581 + AO353_07460 0.46 -0.8 1,642,582 - AO353_07460 0.47 -0.1 1,642,677 + AO353_07460 0.76 -0.4 1,642,746 + +1.7 1,642,746 + +0.3 1,642,746 + +3.4 1,642,747 - +0.4 1,642,747 - +2.0 1,642,747 - +5.4 1,642,757 + -0.7 1,642,757 + -1.2 1,642,757 + -1.1 1,642,757 + +0.6 1,642,757 + -0.1 1,642,757 + -0.9 1,642,758 - -0.3 1,642,758 - -0.1 1,642,758 - -0.1 1,642,758 - -0.1 1,642,758 - -0.4 1,642,758 - +1.1 1,642,758 - +0.2 1,642,758 - -0.4 1,642,758 - +0.7 1,642,758 - -1.5 1,642,758 - -1.3 1,642,758 - +3.3 1,642,758 - -0.9 1,642,758 - -0.3 1,642,777 + +4.2 1,642,818 + AO353_07465 0.20 +0.6 1,642,818 + AO353_07465 0.20 +3.4 1,642,818 + AO353_07465 0.20 +0.2 1,642,819 - AO353_07465 0.21 -0.5 1,642,819 - AO353_07465 0.21 +1.0 1,642,819 - AO353_07465 0.21 -0.5 1,642,899 + AO353_07465 0.43 +0.6 1,642,909 - AO353_07465 0.46 +0.3 1,643,003 - AO353_07465 0.72 -0.3 1,643,069 - -1.3 1,643,139 - +0.1 1,643,139 - -1.2 1,643,140 + -1.4 1,643,244 + -1.0 1,643,245 - -0.9 1,643,313 + -1.9 1,643,314 - -2.1 1,643,314 - +1.1 1,643,314 - +1.2 1,643,314 - -2.1 1,643,315 + +1.1 1,643,315 + -0.7 1,643,315 + +1.1 1,643,337 + +0.3 1,643,337 + +0.1 1,643,337 + +2.3 1,643,337 + +2.3 1,643,337 + +0.5 1,643,338 - -1.6 1,643,338 - -1.3 1,643,338 - +0.3 1,643,338 - +0.5 1,643,338 - -1.3 1,643,442 + -2.4 1,643,519 + AO353_07470 0.13 +0.8 1,643,519 + AO353_07470 0.13 +1.0 1,643,519 + AO353_07470 0.13 -1.1 1,643,519 + AO353_07470 0.13 -1.1 1,643,519 + AO353_07470 0.13 -2.3 1,643,519 + AO353_07470 0.13 +0.3 1,643,519 + AO353_07470 0.13 +0.1 1,643,519 + AO353_07470 0.13 -1.8 1,643,520 - AO353_07470 0.13 -0.3 1,643,520 - AO353_07470 0.13 -1.7 1,643,520 - AO353_07470 0.13 -0.5 1,643,861 + AO353_07470 0.40 -2.8 1,643,862 - AO353_07470 0.40 -2.0 1,643,862 - AO353_07470 0.40 -0.7 1,643,947 + AO353_07470 0.46 +1.9 1,643,947 + AO353_07470 0.46 +0.9 1,643,947 + AO353_07470 0.46 +0.2 1,643,948 - AO353_07470 0.46 +0.4 1,643,948 - AO353_07470 0.46 -1.3 1,643,948 - AO353_07470 0.46 +0.6 1,643,969 + AO353_07470 0.48 -0.8 1,643,969 + AO353_07470 0.48 -1.2 1,643,969 + AO353_07470 0.48 +2.2 1,643,969 + AO353_07470 0.48 -0.7 1,643,969 + AO353_07470 0.48 -0.8 1,643,969 + AO353_07470 0.48 +0.2 1,643,969 + AO353_07470 0.48 -1.0 1,643,970 - AO353_07470 0.48 +0.6 1,643,970 - AO353_07470 0.48 -0.3 1,644,024 + AO353_07470 0.52 -1.3 1,644,024 + AO353_07470 0.52 +0.5 1,644,024 + AO353_07470 0.52 -0.2 1,644,024 + AO353_07470 0.52 -1.0 1,644,025 - AO353_07470 0.52 -1.1 1,644,028 + AO353_07470 0.53 -1.2 1,644,028 + AO353_07470 0.53 -0.5 1,644,028 + AO353_07470 0.53 -0.3 1,644,028 + AO353_07470 0.53 -2.0 1,644,029 - AO353_07470 0.53 -2.5 1,644,029 - AO353_07470 0.53 -1.1 1,644,029 - AO353_07470 0.53 +0.2 1,644,029 - AO353_07470 0.53 -1.0 1,644,029 - AO353_07470 0.53 -2.4 1,644,043 + AO353_07470 0.54 +0.1 1,644,044 - AO353_07470 0.54 -2.2 1,644,044 - AO353_07470 0.54 -2.5 1,644,055 + AO353_07470 0.55 -1.8 1,644,055 + AO353_07470 0.55 -2.2 1,644,055 + AO353_07470 0.55 -1.3 1,644,055 + AO353_07470 0.55 -2.2 1,644,055 + AO353_07470 0.55 -3.4 1,644,055 + AO353_07470 0.55 -1.6 1,644,055 + AO353_07470 0.55 -1.7 1,644,056 - AO353_07470 0.55 -1.3 1,644,056 - AO353_07470 0.55 -0.7 1,644,056 - AO353_07470 0.55 -0.1 1,644,056 - AO353_07470 0.55 -2.2 1,644,056 - AO353_07470 0.55 -1.9 1,644,056 - AO353_07470 0.55 -1.0 1,644,056 - AO353_07470 0.55 -1.4 1,644,056 - AO353_07470 0.55 -1.4 1,644,056 - AO353_07470 0.55 -1.6 1,644,168 + AO353_07470 0.64 +0.1 1,644,168 + AO353_07470 0.64 -1.5 1,644,169 - AO353_07470 0.64 -1.4 1,644,275 + AO353_07470 0.72 -1.1 1,644,275 + AO353_07470 0.72 -0.3 1,644,275 + AO353_07470 0.72 -0.2 1,644,275 + AO353_07470 0.72 -1.8 1,644,275 + AO353_07470 0.72 -2.5 1,644,276 - AO353_07470 0.72 +1.3 1,644,276 - AO353_07470 0.72 -2.3 1,644,337 - AO353_07470 0.77 -1.3 1,644,408 + AO353_07470 0.82 -2.5 1,644,409 - AO353_07470 0.82 -0.1 1,644,452 + AO353_07470 0.86 -2.1 1,644,453 - AO353_07470 0.86 +0.3 1,644,716 + AO353_07475 0.12 -1.5 1,644,716 + AO353_07475 0.12 -1.5 1,644,717 - AO353_07475 0.12 -0.7 1,644,717 - AO353_07475 0.12 -1.8 1,644,717 - AO353_07475 0.12 -2.1 1,644,790 + AO353_07475 0.23 -0.3 1,644,829 + AO353_07475 0.28 -1.8 1,644,893 - AO353_07475 0.38 -2.1 1,644,914 + AO353_07475 0.41 -2.0 1,644,915 - AO353_07475 0.41 -1.1 1,644,997 - AO353_07475 0.53 -0.9 1,644,997 - AO353_07475 0.53 +0.1 1,644,997 - AO353_07475 0.53 -3.2 1,644,997 - AO353_07475 0.53 -0.3 1,644,997 - AO353_07475 0.53 -1.0 1,645,022 + AO353_07475 0.56 -1.7 1,645,022 + AO353_07475 0.56 -2.1 1,645,022 + AO353_07475 0.56 +0.7 1,645,023 - AO353_07475 0.56 -0.7 1,645,123 + AO353_07475 0.71 +0.1 1,645,124 - AO353_07475 0.71 -2.2 1,645,124 - AO353_07475 0.71 -1.6 1,645,129 + AO353_07475 0.71 -2.3 1,645,129 + AO353_07475 0.71 +0.3 1,645,130 - AO353_07475 0.72 -0.8 1,645,130 - AO353_07475 0.72 -2.6 1,645,130 - AO353_07475 0.72 -0.5 1,645,130 - AO353_07475 0.72 -2.5 1,645,130 - AO353_07475 0.72 -0.8 1,645,130 - AO353_07475 0.72 -1.0 1,645,130 - AO353_07475 0.72 -1.0 1,645,130 - AO353_07475 0.72 -2.1 1,645,130 - AO353_07475 0.72 -2.6 1,645,130 - AO353_07475 0.72 +0.3 1,645,172 + AO353_07475 0.78 +0.6 1,645,296 + -0.8 1,645,296 + +0.3 1,645,296 + -0.7 1,645,297 - -0.0 1,645,300 + -0.8 1,645,316 - -1.2 1,645,316 - -3.1 1,645,323 - -0.4 1,645,346 + -1.1 1,645,347 - -1.5 1,645,371 - -0.7 1,645,371 - +0.5 1,645,429 + +1.5 1,645,466 + -3.3 1,645,466 + -1.2 1,645,466 + -1.2 1,645,466 + -1.7 1,645,466 + -1.6 1,645,467 - -1.5 1,645,467 - -1.3 1,645,467 - -1.7 1,645,467 - -1.9 1,645,585 + AO353_07480 0.17 -2.6 1,645,586 - AO353_07480 0.17 -2.3 1,645,586 - AO353_07480 0.17 +0.5 1,645,615 + AO353_07480 0.20 -0.9 1,645,615 + AO353_07480 0.20 -2.1 1,645,615 + AO353_07480 0.20 -2.0 1,645,615 + AO353_07480 0.20 -1.6 1,645,615 + AO353_07480 0.20 +0.1 1,645,616 - AO353_07480 0.20 -1.3 1,645,616 - AO353_07480 0.20 -2.6 1,645,616 - AO353_07480 0.20 -2.6 1,645,616 - AO353_07480 0.20 -0.5 1,645,616 - AO353_07480 0.20 -1.1 1,645,616 - AO353_07480 0.20 -0.9 1,645,616 - AO353_07480 0.20 -2.0 1,645,616 - AO353_07480 0.20 +0.1 1,645,616 - AO353_07480 0.20 +0.2 1,645,622 + AO353_07480 0.21 -1.5 1,645,622 + AO353_07480 0.21 -0.1 1,645,622 + AO353_07480 0.21 -2.0 1,645,622 + AO353_07480 0.21 -0.4 1,645,622 + AO353_07480 0.21 -2.5 1,645,622 + AO353_07480 0.21 -1.2 1,645,623 - AO353_07480 0.21 -0.9 1,645,623 - AO353_07480 0.21 -0.5 1,645,623 - AO353_07480 0.21 -1.2 1,645,623 - AO353_07480 0.21 -1.1 1,645,623 - AO353_07480 0.21 -1.9 1,645,623 - AO353_07480 0.21 -1.1
Or see this region's nucleotide sequence