Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06390

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06380 and AO353_06385 overlap by 8 nucleotidesAO353_06385 and AO353_06390 are separated by 5 nucleotidesAO353_06390 and AO353_06395 are separated by 8 nucleotides AO353_06380: AO353_06380 - ATP-binding protein, at 1,423,054 to 1,424,073 _06380 AO353_06385: AO353_06385 - rRNA maturation factor, at 1,424,066 to 1,424,560 _06385 AO353_06390: AO353_06390 - magnesium transporter, at 1,424,566 to 1,425,405 _06390 AO353_06395: AO353_06395 - acyltransferase, at 1,425,414 to 1,426,937 _06395 Position (kb) 1424 1425 1426Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1423.636 kb on + strand, within AO353_06380at 1423.636 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.935 kb on + strand, within AO353_06380at 1423.935 kb on + strand, within AO353_06380at 1423.996 kb on + strandat 1424.539 kb on + strandat 1424.539 kb on + strandat 1424.558 kb on + strandat 1424.565 kb on + strandat 1424.753 kb on + strand, within AO353_06390at 1424.753 kb on + strand, within AO353_06390at 1424.753 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.157 kb on + strand, within AO353_06390at 1425.393 kb on + strandat 1425.393 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,423,636 + AO353_06380 0.57 +0.5
1,423,636 + AO353_06380 0.57 -1.1
1,423,720 + AO353_06380 0.65 +0.4
1,423,720 + AO353_06380 0.65 -1.0
1,423,720 + AO353_06380 0.65 +1.0
1,423,720 + AO353_06380 0.65 -0.1
1,423,720 + AO353_06380 0.65 +0.2
1,423,720 + AO353_06380 0.65 -0.6
1,423,720 + AO353_06380 0.65 -2.1
1,423,935 + AO353_06380 0.86 -2.7
1,423,935 + AO353_06380 0.86 +1.9
1,423,996 + +1.3
1,424,539 + +1.8
1,424,539 + +0.8
1,424,558 + -2.6
1,424,565 + +2.2
1,424,753 + AO353_06390 0.22 -1.9
1,424,753 + AO353_06390 0.22 -2.0
1,424,753 + AO353_06390 0.22 -2.8
1,425,157 + AO353_06390 0.70 +0.0
1,425,157 + AO353_06390 0.70 -0.7
1,425,157 + AO353_06390 0.70 -1.1
1,425,157 + AO353_06390 0.70 -1.1
1,425,157 + AO353_06390 0.70 -1.6
1,425,157 + AO353_06390 0.70 -3.0
1,425,157 + AO353_06390 0.70 -2.2
1,425,157 + AO353_06390 0.70 +0.8
1,425,157 + AO353_06390 0.70 -1.3
1,425,157 + AO353_06390 0.70 -1.2
1,425,157 + AO353_06390 0.70 -1.5
1,425,157 + AO353_06390 0.70 -2.4
1,425,157 + AO353_06390 0.70 -0.7
1,425,157 + AO353_06390 0.70 -0.0
1,425,157 + AO353_06390 0.70 -0.3
1,425,157 + AO353_06390 0.70 -1.6
1,425,393 + +0.0
1,425,393 + -0.2

Or see this region's nucleotide sequence