Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04590

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04580 and AO353_04585 are separated by 39 nucleotidesAO353_04585 and AO353_04590 are separated by 113 nucleotidesAO353_04590 and AO353_04595 overlap by 11 nucleotides AO353_04580: AO353_04580 - GIY-YIG nuclease, at 989,392 to 989,712 _04580 AO353_04585: AO353_04585 - ketosteroid isomerase, at 989,752 to 990,222 _04585 AO353_04590: AO353_04590 - MFS transporter, at 990,336 to 991,652 _04590 AO353_04595: AO353_04595 - GntR family transcriptional regulator, at 991,642 to 992,301 _04595 Position (kb) 990 991 992Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 989.340 kb on + strandat 989.363 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.387 kb on - strandat 989.387 kb on - strandat 989.387 kb on - strandat 989.387 kb on - strandat 989.387 kb on - strandat 989.387 kb on - strandat 989.402 kb on - strandat 989.491 kb on - strand, within AO353_04580at 989.510 kb on + strand, within AO353_04580at 989.510 kb on + strand, within AO353_04580at 989.510 kb on + strand, within AO353_04580at 989.510 kb on + strand, within AO353_04580at 989.510 kb on + strand, within AO353_04580at 989.511 kb on - strand, within AO353_04580at 989.556 kb on + strand, within AO353_04580at 989.609 kb on + strand, within AO353_04580at 989.609 kb on + strand, within AO353_04580at 989.610 kb on - strand, within AO353_04580at 989.639 kb on + strand, within AO353_04580at 989.639 kb on + strand, within AO353_04580at 989.639 kb on + strand, within AO353_04580at 989.730 kb on + strandat 989.731 kb on - strandat 989.750 kb on + strandat 989.751 kb on - strandat 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.976 kb on - strand, within AO353_04585at 989.976 kb on - strand, within AO353_04585at 989.976 kb on - strand, within AO353_04585at 989.976 kb on - strand, within AO353_04585at 990.141 kb on - strand, within AO353_04585at 990.185 kb on + strandat 990.185 kb on + strandat 990.185 kb on + strandat 990.185 kb on + strandat 990.185 kb on + strandat 990.185 kb on + strandat 990.185 kb on + strandat 990.186 kb on - strandat 990.186 kb on - strandat 990.186 kb on - strandat 990.186 kb on - strandat 990.273 kb on + strandat 990.274 kb on - strandat 990.297 kb on - strandat 990.297 kb on - strandat 990.318 kb on - strandat 990.360 kb on + strandat 990.360 kb on + strandat 990.360 kb on + strandat 990.360 kb on + strandat 990.360 kb on + strandat 990.360 kb on + strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.364 kb on + strandat 990.413 kb on + strandat 990.414 kb on - strandat 990.414 kb on - strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.463 kb on - strandat 990.463 kb on - strandat 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.503 kb on - strand, within AO353_04590at 990.593 kb on + strand, within AO353_04590at 990.652 kb on + strand, within AO353_04590at 990.653 kb on - strand, within AO353_04590at 990.857 kb on - strand, within AO353_04590at 990.857 kb on - strand, within AO353_04590at 990.857 kb on - strand, within AO353_04590at 990.857 kb on - strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.883 kb on + strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 990.884 kb on - strand, within AO353_04590at 991.111 kb on + strand, within AO353_04590at 991.111 kb on + strand, within AO353_04590at 991.111 kb on + strand, within AO353_04590at 991.112 kb on - strand, within AO353_04590at 991.112 kb on - strand, within AO353_04590at 991.112 kb on - strand, within AO353_04590at 991.506 kb on + strand, within AO353_04590at 991.507 kb on - strand, within AO353_04590at 991.607 kb on + strandat 991.607 kb on + strandat 991.808 kb on + strand, within AO353_04595at 991.819 kb on - strand, within AO353_04595at 991.831 kb on - strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.880 kb on + strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.881 kb on - strand, within AO353_04595at 991.885 kb on - strand, within AO353_04595at 992.251 kb on + strandat 992.252 kb on - strandat 992.252 kb on - strandat 992.326 kb on + strandat 992.348 kb on + strandat 992.348 kb on + strandat 992.349 kb on - strandat 992.385 kb on - strandat 992.385 kb on - strandat 992.385 kb on - strandat 992.385 kb on - strandat 992.426 kb on - strandat 992.426 kb on - strandat 992.426 kb on - strandat 992.432 kb on + strandat 992.442 kb on + strandat 992.442 kb on + strandat 992.442 kb on + strandat 992.442 kb on + strandat 992.442 kb on + strandat 992.442 kb on + strandat 992.442 kb on + strandat 992.442 kb on + strandat 992.443 kb on - strandat 992.443 kb on - strandat 992.443 kb on - strandat 992.443 kb on - strandat 992.443 kb on - strandat 992.443 kb on - strandat 992.443 kb on - strandat 992.443 kb on - strandat 992.443 kb on - strandat 992.445 kb on + strandat 992.446 kb on - strandat 992.446 kb on - strandat 992.446 kb on - strandat 992.446 kb on - strandat 992.446 kb on - strandat 992.446 kb on - strandat 992.446 kb on - strandat 992.467 kb on + strandat 992.540 kb on + strandat 992.563 kb on - strandat 992.639 kb on + strandat 992.639 kb on + strandat 992.639 kb on + strandat 992.640 kb on - strandat 992.640 kb on - strandat 992.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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989,340 + +2.9
989,363 + +1.3
989,386 + -0.1
989,386 + +1.1
989,386 + +0.6
989,386 + +2.1
989,386 + +2.6
989,386 + -1.2
989,386 + -0.6
989,386 + -0.6
989,386 + +1.2
989,387 - -2.2
989,387 - -0.8
989,387 - -0.9
989,387 - +0.7
989,387 - +0.4
989,387 - +0.8
989,402 - -1.0
989,491 - AO353_04580 0.31 +2.0
989,510 + AO353_04580 0.37 +0.6
989,510 + AO353_04580 0.37 +1.0
989,510 + AO353_04580 0.37 +0.1
989,510 + AO353_04580 0.37 +1.1
989,510 + AO353_04580 0.37 -1.7
989,511 - AO353_04580 0.37 +0.2
989,556 + AO353_04580 0.51 +2.9
989,609 + AO353_04580 0.68 -1.4
989,609 + AO353_04580 0.68 +0.1
989,610 - AO353_04580 0.68 +0.4
989,639 + AO353_04580 0.77 +1.4
989,639 + AO353_04580 0.77 +0.4
989,639 + AO353_04580 0.77 -1.4
989,730 + -0.9
989,731 - +1.7
989,750 + +1.3
989,751 - +1.5
989,975 + AO353_04585 0.47 -2.5
989,975 + AO353_04585 0.47 -2.1
989,975 + AO353_04585 0.47 -1.4
989,975 + AO353_04585 0.47 +1.2
989,975 + AO353_04585 0.47 +0.3
989,975 + AO353_04585 0.47 -1.7
989,975 + AO353_04585 0.47 -1.2
989,976 - AO353_04585 0.48 +0.3
989,976 - AO353_04585 0.48 +0.7
989,976 - AO353_04585 0.48 +0.4
989,976 - AO353_04585 0.48 +0.1
990,141 - AO353_04585 0.83 +0.6
990,185 + +0.5
990,185 + +2.2
990,185 + -0.5
990,185 + +0.3
990,185 + +2.0
990,185 + -1.4
990,185 + +2.3
990,186 - +0.1
990,186 - -0.7
990,186 - +1.7
990,186 - +1.1
990,273 + -0.1
990,274 - +0.1
990,297 - +0.2
990,297 - -1.7
990,318 - -0.0
990,360 + -2.4
990,360 + +2.1
990,360 + -1.4
990,360 + -2.2
990,360 + +2.3
990,360 + -0.6
990,361 - +0.4
990,361 - +1.2
990,361 - -0.9
990,361 - +0.6
990,361 - -1.7
990,361 - +0.3
990,361 - -0.6
990,364 + -0.7
990,413 + -2.0
990,414 - +1.4
990,414 - -0.1
990,462 + -0.8
990,462 + -0.7
990,462 + -1.5
990,462 + +1.1
990,462 + +0.2
990,462 + -2.1
990,462 + +0.5
990,463 - -0.3
990,463 - +0.3
990,500 + AO353_04590 0.12 +0.2
990,500 + AO353_04590 0.12 -0.3
990,500 + AO353_04590 0.12 +1.0
990,500 + AO353_04590 0.12 -0.7
990,500 + AO353_04590 0.12 +1.1
990,500 + AO353_04590 0.12 -0.0
990,500 + AO353_04590 0.12 -0.6
990,500 + AO353_04590 0.12 -0.9
990,500 + AO353_04590 0.12 -0.1
990,500 + AO353_04590 0.12 +0.7
990,500 + AO353_04590 0.12 -1.0
990,500 + AO353_04590 0.12 -0.3
990,500 + AO353_04590 0.12 +1.5
990,500 + AO353_04590 0.12 -0.8
990,501 - AO353_04590 0.13 -2.0
990,501 - AO353_04590 0.13 -0.1
990,501 - AO353_04590 0.13 +0.1
990,501 - AO353_04590 0.13 +0.0
990,501 - AO353_04590 0.13 +1.4
990,501 - AO353_04590 0.13 -1.3
990,501 - AO353_04590 0.13 +0.3
990,501 - AO353_04590 0.13 +2.1
990,501 - AO353_04590 0.13 +0.7
990,501 - AO353_04590 0.13 -0.7
990,501 - AO353_04590 0.13 +0.8
990,501 - AO353_04590 0.13 -1.5
990,503 - AO353_04590 0.13 -0.3
990,593 + AO353_04590 0.20 -0.3
990,652 + AO353_04590 0.24 -1.0
990,653 - AO353_04590 0.24 -1.7
990,857 - AO353_04590 0.40 -1.9
990,857 - AO353_04590 0.40 -1.0
990,857 - AO353_04590 0.40 -0.1
990,857 - AO353_04590 0.40 +0.8
990,883 + AO353_04590 0.42 +0.7
990,883 + AO353_04590 0.42 +1.3
990,883 + AO353_04590 0.42 -0.1
990,883 + AO353_04590 0.42 +1.7
990,883 + AO353_04590 0.42 -0.3
990,883 + AO353_04590 0.42 +0.1
990,883 + AO353_04590 0.42 +2.1
990,883 + AO353_04590 0.42 +0.3
990,883 + AO353_04590 0.42 -0.2
990,883 + AO353_04590 0.42 +0.0
990,883 + AO353_04590 0.42 -1.8
990,884 - AO353_04590 0.42 +0.5
990,884 - AO353_04590 0.42 -2.0
990,884 - AO353_04590 0.42 -1.5
990,884 - AO353_04590 0.42 -0.1
990,884 - AO353_04590 0.42 -0.3
990,884 - AO353_04590 0.42 -0.4
990,884 - AO353_04590 0.42 -0.6
990,884 - AO353_04590 0.42 +0.9
990,884 - AO353_04590 0.42 +1.0
990,884 - AO353_04590 0.42 -0.5
990,884 - AO353_04590 0.42 +0.7
991,111 + AO353_04590 0.59 -0.4
991,111 + AO353_04590 0.59 +1.1
991,111 + AO353_04590 0.59 -0.0
991,112 - AO353_04590 0.59 -2.4
991,112 - AO353_04590 0.59 +4.0
991,112 - AO353_04590 0.59 +1.0
991,506 + AO353_04590 0.89 +0.9
991,507 - AO353_04590 0.89 +1.0
991,607 + -0.7
991,607 + -0.9
991,808 + AO353_04595 0.25 -1.1
991,819 - AO353_04595 0.27 +0.7
991,831 - AO353_04595 0.29 -2.5
991,880 + AO353_04595 0.36 -0.0
991,880 + AO353_04595 0.36 +0.8
991,880 + AO353_04595 0.36 +1.5
991,880 + AO353_04595 0.36 +0.1
991,880 + AO353_04595 0.36 +0.0
991,880 + AO353_04595 0.36 +1.7
991,880 + AO353_04595 0.36 -0.7
991,880 + AO353_04595 0.36 +0.4
991,880 + AO353_04595 0.36 -0.3
991,880 + AO353_04595 0.36 +1.6
991,880 + AO353_04595 0.36 +0.7
991,880 + AO353_04595 0.36 -0.4
991,880 + AO353_04595 0.36 -0.6
991,880 + AO353_04595 0.36 +0.9
991,880 + AO353_04595 0.36 -0.4
991,880 + AO353_04595 0.36 +1.1
991,880 + AO353_04595 0.36 -0.2
991,880 + AO353_04595 0.36 +0.6
991,880 + AO353_04595 0.36 -0.1
991,880 + AO353_04595 0.36 -1.2
991,880 + AO353_04595 0.36 +0.6
991,880 + AO353_04595 0.36 +0.4
991,880 + AO353_04595 0.36 -0.9
991,880 + AO353_04595 0.36 +0.4
991,880 + AO353_04595 0.36 +0.7
991,880 + AO353_04595 0.36 +0.8
991,880 + AO353_04595 0.36 +0.0
991,880 + AO353_04595 0.36 +0.6
991,881 - AO353_04595 0.36 +3.6
991,881 - AO353_04595 0.36 +1.6
991,881 - AO353_04595 0.36 +0.2
991,881 - AO353_04595 0.36 +0.3
991,881 - AO353_04595 0.36 -1.4
991,881 - AO353_04595 0.36 -0.6
991,881 - AO353_04595 0.36 +0.3
991,881 - AO353_04595 0.36 -1.3
991,881 - AO353_04595 0.36 -0.1
991,881 - AO353_04595 0.36 +0.7
991,881 - AO353_04595 0.36 -2.0
991,881 - AO353_04595 0.36 +2.0
991,881 - AO353_04595 0.36 -1.6
991,881 - AO353_04595 0.36 +0.9
991,881 - AO353_04595 0.36 +0.4
991,881 - AO353_04595 0.36 -1.7
991,881 - AO353_04595 0.36 +0.2
991,881 - AO353_04595 0.36 +0.4
991,881 - AO353_04595 0.36 -0.4
991,881 - AO353_04595 0.36 -0.4
991,881 - AO353_04595 0.36 -0.3
991,881 - AO353_04595 0.36 +0.1
991,881 - AO353_04595 0.36 -1.4
991,881 - AO353_04595 0.36 -0.2
991,881 - AO353_04595 0.36 +1.1
991,881 - AO353_04595 0.36 -1.7
991,881 - AO353_04595 0.36 +1.2
991,881 - AO353_04595 0.36 -0.8
991,881 - AO353_04595 0.36 +0.1
991,881 - AO353_04595 0.36 +0.7
991,881 - AO353_04595 0.36 -0.2
991,881 - AO353_04595 0.36 +0.4
991,885 - AO353_04595 0.37 +1.6
992,251 + -1.2
992,252 - +0.5
992,252 - +0.7
992,326 + -0.4
992,348 + -0.2
992,348 + -0.1
992,349 - +0.7
992,385 - -0.9
992,385 - +1.0
992,385 - -1.0
992,385 - -1.5
992,426 - -1.5
992,426 - +1.0
992,426 - -1.2
992,432 + -1.6
992,442 + +0.2
992,442 + -1.9
992,442 + +2.9
992,442 + -0.9
992,442 + -0.1
992,442 + -1.0
992,442 + +0.9
992,442 + -2.3
992,443 - -0.3
992,443 - +0.4
992,443 - +2.0
992,443 - -2.4
992,443 - +0.1
992,443 - -0.1
992,443 - +2.9
992,443 - -1.0
992,443 - -0.6
992,445 + -0.4
992,446 - +0.5
992,446 - -0.7
992,446 - +1.2
992,446 - +1.1
992,446 - -0.6
992,446 - +0.7
992,446 - -1.3
992,467 + -0.3
992,540 + +0.6
992,563 - -1.7
992,639 + -1.7
992,639 + -0.9
992,639 + -0.6
992,640 - -0.1
992,640 - +2.4
992,640 - +1.0

Or see this region's nucleotide sequence