Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03145 and AO353_03150 are separated by 122 nucleotides AO353_03150 and AO353_03155 are separated by 76 nucleotides AO353_03155 and AO353_03160 are separated by 268 nucleotides
AO353_03145: AO353_03145 - glycerophosphodiester phosphodiesterase, at 671,264 to 672,391
_03145
AO353_03150: AO353_03150 - peptidase M4, at 672,514 to 672,834
_03150
AO353_03155: AO353_03155 - hypothetical protein, at 672,911 to 673,282
_03155
AO353_03160: AO353_03160 - chemotaxis protein, at 673,551 to 675,176
_03160
Position (kb) 672
673
674 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 672.053 kb on + strand, within AO353_03145 at 672.053 kb on + strand, within AO353_03145 at 672.053 kb on + strand, within AO353_03145 at 672.053 kb on + strand, within AO353_03145 at 672.053 kb on + strand, within AO353_03145 at 672.053 kb on + strand, within AO353_03145 at 672.053 kb on + strand, within AO353_03145 at 672.053 kb on + strand, within AO353_03145 at 672.053 kb on + strand, within AO353_03145 at 672.053 kb on + strand, within AO353_03145 at 672.054 kb on - strand, within AO353_03145 at 672.054 kb on - strand, within AO353_03145 at 672.054 kb on - strand, within AO353_03145 at 672.054 kb on - strand, within AO353_03145 at 672.054 kb on - strand, within AO353_03145 at 672.054 kb on - strand, within AO353_03145 at 672.054 kb on - strand, within AO353_03145 at 672.054 kb on - strand, within AO353_03145 at 672.054 kb on - strand, within AO353_03145 at 672.054 kb on - strand, within AO353_03145 at 672.056 kb on + strand, within AO353_03145 at 672.056 kb on + strand, within AO353_03145 at 672.057 kb on - strand, within AO353_03145 at 672.057 kb on - strand, within AO353_03145 at 672.176 kb on + strand, within AO353_03145 at 672.176 kb on + strand, within AO353_03145 at 672.176 kb on + strand, within AO353_03145 at 672.176 kb on + strand, within AO353_03145 at 672.177 kb on - strand, within AO353_03145 at 672.177 kb on - strand, within AO353_03145 at 672.177 kb on - strand, within AO353_03145 at 672.209 kb on + strand, within AO353_03145 at 672.209 kb on + strand, within AO353_03145 at 672.209 kb on + strand, within AO353_03145 at 672.210 kb on - strand, within AO353_03145 at 672.210 kb on - strand, within AO353_03145 at 672.242 kb on + strand, within AO353_03145 at 672.242 kb on + strand, within AO353_03145 at 672.242 kb on + strand, within AO353_03145 at 672.242 kb on + strand, within AO353_03145 at 672.242 kb on + strand, within AO353_03145 at 672.243 kb on - strand, within AO353_03145 at 672.243 kb on - strand, within AO353_03145 at 672.266 kb on + strand, within AO353_03145 at 672.266 kb on + strand, within AO353_03145 at 672.267 kb on - strand, within AO353_03145 at 672.267 kb on - strand, within AO353_03145 at 672.267 kb on - strand, within AO353_03145 at 672.333 kb on - strand at 672.333 kb on - strand at 672.333 kb on - strand at 672.333 kb on - strand at 672.333 kb on - strand at 672.333 kb on - strand at 672.335 kb on + strand at 672.335 kb on + strand at 672.335 kb on + strand at 672.335 kb on + strand at 672.335 kb on + strand at 672.335 kb on + strand at 672.335 kb on + strand at 672.335 kb on + strand at 672.335 kb on + strand at 672.336 kb on - strand at 672.336 kb on - strand at 672.336 kb on - strand at 672.336 kb on - strand at 672.336 kb on - strand at 672.386 kb on + strand at 672.387 kb on - strand at 672.389 kb on + strand at 672.389 kb on + strand at 672.389 kb on + strand at 672.389 kb on + strand at 672.389 kb on + strand at 672.389 kb on + strand at 672.389 kb on + strand at 672.389 kb on + strand at 672.389 kb on + strand at 672.389 kb on + strand at 672.389 kb on + strand at 672.390 kb on - strand at 672.390 kb on - strand at 672.390 kb on - strand at 672.390 kb on - strand at 672.390 kb on - strand at 672.390 kb on - strand at 672.390 kb on - strand at 672.390 kb on - strand at 672.390 kb on - strand at 672.390 kb on - strand at 672.390 kb on - strand at 672.392 kb on + strand at 672.392 kb on + strand at 672.392 kb on + strand at 672.392 kb on + strand at 672.392 kb on + strand at 672.393 kb on - strand at 672.393 kb on - strand at 672.393 kb on - strand at 672.393 kb on - strand at 672.393 kb on - strand at 672.393 kb on - strand at 672.393 kb on - strand at 672.448 kb on + strand at 672.448 kb on + strand at 672.448 kb on + strand at 672.448 kb on + strand at 672.449 kb on - strand at 672.449 kb on - strand at 672.449 kb on - strand at 672.449 kb on - strand at 672.459 kb on + strand at 672.459 kb on + strand at 672.459 kb on + strand at 672.459 kb on + strand at 672.460 kb on - strand at 672.460 kb on - strand at 672.460 kb on - strand at 672.460 kb on - strand at 672.460 kb on - strand at 672.460 kb on - strand at 672.488 kb on + strand at 672.488 kb on + strand at 672.488 kb on + strand at 672.489 kb on - strand at 672.489 kb on - strand at 672.489 kb on - strand at 672.733 kb on + strand, within AO353_03150 at 672.733 kb on + strand, within AO353_03150 at 672.734 kb on - strand, within AO353_03150 at 672.739 kb on + strand, within AO353_03150 at 672.740 kb on - strand, within AO353_03150 at 672.740 kb on - strand, within AO353_03150 at 672.740 kb on - strand, within AO353_03150 at 672.740 kb on - strand, within AO353_03150 at 672.740 kb on - strand, within AO353_03150 at 672.816 kb on + strand at 672.816 kb on + strand at 672.816 kb on + strand at 672.816 kb on + strand at 672.817 kb on - strand at 672.817 kb on - strand at 672.817 kb on - strand at 672.817 kb on - strand at 672.819 kb on + strand at 672.819 kb on + strand at 672.819 kb on + strand at 672.820 kb on - strand at 672.820 kb on - strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.832 kb on + strand at 672.833 kb on - strand at 672.833 kb on - strand at 672.833 kb on - strand at 672.833 kb on - strand at 672.833 kb on - strand at 672.932 kb on + strand at 672.932 kb on + strand at 672.933 kb on - strand at 672.933 kb on - strand at 672.933 kb on - strand at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.961 kb on + strand, within AO353_03155 at 672.962 kb on - strand, within AO353_03155 at 672.962 kb on - strand, within AO353_03155 at 672.962 kb on - strand, within AO353_03155 at 672.962 kb on - strand, within AO353_03155 at 672.968 kb on + strand, within AO353_03155 at 672.968 kb on + strand, within AO353_03155 at 672.968 kb on + strand, within AO353_03155 at 672.968 kb on + strand, within AO353_03155 at 672.968 kb on + strand, within AO353_03155 at 672.969 kb on - strand, within AO353_03155 at 672.969 kb on - strand, within AO353_03155 at 672.969 kb on - strand, within AO353_03155 at 672.969 kb on - strand, within AO353_03155 at 672.971 kb on + strand, within AO353_03155 at 672.971 kb on + strand at 672.971 kb on + strand, within AO353_03155 at 672.971 kb on + strand, within AO353_03155 at 672.971 kb on + strand, within AO353_03155 at 672.971 kb on + strand, within AO353_03155 at 672.971 kb on + strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 672.972 kb on - strand, within AO353_03155 at 673.017 kb on + strand, within AO353_03155 at 673.017 kb on + strand, within AO353_03155 at 673.017 kb on + strand, within AO353_03155 at 673.018 kb on - strand, within AO353_03155 at 673.018 kb on - strand, within AO353_03155 at 673.018 kb on - strand, within AO353_03155 at 673.018 kb on - strand, within AO353_03155 at 673.018 kb on - strand, within AO353_03155 at 673.043 kb on - strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.047 kb on + strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.048 kb on - strand, within AO353_03155 at 673.061 kb on - strand, within AO353_03155 at 673.093 kb on + strand, within AO353_03155 at 673.094 kb on - strand, within AO353_03155 at 673.108 kb on + strand, within AO353_03155 at 673.108 kb on + strand, within AO353_03155 at 673.108 kb on + strand, within AO353_03155 at 673.108 kb on + strand, within AO353_03155 at 673.112 kb on + strand, within AO353_03155 at 673.112 kb on + strand, within AO353_03155 at 673.112 kb on + strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.113 kb on - strand, within AO353_03155 at 673.131 kb on + strand, within AO353_03155 at 673.132 kb on - strand, within AO353_03155 at 673.132 kb on - strand, within AO353_03155 at 673.132 kb on - strand, within AO353_03155 at 673.267 kb on + strand at 673.267 kb on + strand at 673.268 kb on - strand at 673.268 kb on - strand at 673.307 kb on - strand at 673.307 kb on - strand at 673.332 kb on + strand at 673.332 kb on + strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.333 kb on - strand at 673.359 kb on + strand at 673.360 kb on - strand at 673.371 kb on + strand at 673.371 kb on + strand at 673.372 kb on - strand at 673.372 kb on - strand at 673.372 kb on - strand at 673.378 kb on + strand at 673.378 kb on + strand at 673.378 kb on + strand at 673.379 kb on - strand at 673.379 kb on - strand at 673.379 kb on - strand at 673.379 kb on - strand at 673.379 kb on - strand at 673.513 kb on - strand at 673.553 kb on - strand at 673.649 kb on + strand at 673.769 kb on + strand, within AO353_03160 at 673.769 kb on + strand, within AO353_03160 at 673.769 kb on + strand, within AO353_03160 at 673.784 kb on + strand, within AO353_03160 at 673.785 kb on - strand, within AO353_03160 at 673.860 kb on + strand, within AO353_03160 at 673.860 kb on + strand, within AO353_03160 at 673.938 kb on + strand, within AO353_03160 at 673.938 kb on + strand, within AO353_03160 at 673.938 kb on + strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160 at 673.939 kb on - strand, within AO353_03160
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 672,053 + AO353_03145 0.70 +1.3 672,053 + AO353_03145 0.70 -1.0 672,053 + AO353_03145 0.70 +0.2 672,053 + AO353_03145 0.70 -0.2 672,053 + AO353_03145 0.70 +1.0 672,053 + AO353_03145 0.70 -0.9 672,053 + AO353_03145 0.70 -0.6 672,053 + AO353_03145 0.70 -0.0 672,053 + AO353_03145 0.70 +3.8 672,053 + AO353_03145 0.70 +2.1 672,054 - AO353_03145 0.70 -0.0 672,054 - AO353_03145 0.70 +1.5 672,054 - AO353_03145 0.70 +2.0 672,054 - AO353_03145 0.70 -0.0 672,054 - AO353_03145 0.70 -1.8 672,054 - AO353_03145 0.70 +0.7 672,054 - AO353_03145 0.70 +0.8 672,054 - AO353_03145 0.70 -0.5 672,054 - AO353_03145 0.70 +0.0 672,054 - AO353_03145 0.70 +0.8 672,056 + AO353_03145 0.70 +0.6 672,056 + AO353_03145 0.70 -0.6 672,057 - AO353_03145 0.70 +1.2 672,057 - AO353_03145 0.70 -0.3 672,176 + AO353_03145 0.81 +1.1 672,176 + AO353_03145 0.81 -2.2 672,176 + AO353_03145 0.81 +0.7 672,176 + AO353_03145 0.81 -1.9 672,177 - AO353_03145 0.81 -1.0 672,177 - AO353_03145 0.81 +1.7 672,177 - AO353_03145 0.81 -0.3 672,209 + AO353_03145 0.84 +0.4 672,209 + AO353_03145 0.84 +1.0 672,209 + AO353_03145 0.84 -2.0 672,210 - AO353_03145 0.84 -0.6 672,210 - AO353_03145 0.84 -0.3 672,242 + AO353_03145 0.87 +0.4 672,242 + AO353_03145 0.87 +2.5 672,242 + AO353_03145 0.87 +1.0 672,242 + AO353_03145 0.87 -0.8 672,242 + AO353_03145 0.87 -0.3 672,243 - AO353_03145 0.87 -0.9 672,243 - AO353_03145 0.87 +1.0 672,266 + AO353_03145 0.89 +1.7 672,266 + AO353_03145 0.89 -0.1 672,267 - AO353_03145 0.89 +0.3 672,267 - AO353_03145 0.89 -1.0 672,267 - AO353_03145 0.89 +0.5 672,333 - -0.2 672,333 - +1.5 672,333 - -0.3 672,333 - +1.6 672,333 - -0.3 672,333 - -0.2 672,335 + -0.2 672,335 + +0.5 672,335 + -0.5 672,335 + -1.0 672,335 + -0.1 672,335 + -0.3 672,335 + -1.5 672,335 + +0.4 672,335 + +0.2 672,336 - +1.0 672,336 - -0.3 672,336 - +1.8 672,336 - -2.6 672,336 - -1.9 672,386 + +1.0 672,387 - -0.2 672,389 + +0.7 672,389 + +1.0 672,389 + -0.6 672,389 + -0.3 672,389 + -1.3 672,389 + +1.5 672,389 + -0.9 672,389 + +0.0 672,389 + +1.0 672,389 + -0.9 672,389 + -0.6 672,390 - +2.7 672,390 - -1.4 672,390 - -0.8 672,390 - -1.1 672,390 - -1.4 672,390 - -0.7 672,390 - +0.2 672,390 - +2.0 672,390 - +1.4 672,390 - +1.6 672,390 - -1.4 672,392 + -1.5 672,392 + +1.8 672,392 + +0.4 672,392 + +1.7 672,392 + -1.0 672,393 - +2.2 672,393 - -1.3 672,393 - -0.4 672,393 - +1.4 672,393 - +3.8 672,393 - -1.5 672,393 - -0.8 672,448 + +1.0 672,448 + -0.5 672,448 + -0.5 672,448 + +0.5 672,449 - -1.0 672,449 - +0.4 672,449 - -0.6 672,449 - -1.5 672,459 + +0.6 672,459 + -0.6 672,459 + +0.2 672,459 + -0.1 672,460 - -0.5 672,460 - +0.5 672,460 - +0.9 672,460 - +1.3 672,460 - -2.1 672,460 - -0.5 672,488 + -0.1 672,488 + -0.7 672,488 + +0.5 672,489 - +0.1 672,489 - -1.6 672,489 - +1.1 672,733 + AO353_03150 0.68 +0.5 672,733 + AO353_03150 0.68 -0.1 672,734 - AO353_03150 0.69 -0.5 672,739 + AO353_03150 0.70 -1.3 672,740 - AO353_03150 0.70 -0.5 672,740 - AO353_03150 0.70 -0.8 672,740 - AO353_03150 0.70 -1.0 672,740 - AO353_03150 0.70 -2.1 672,740 - AO353_03150 0.70 -1.6 672,816 + -1.3 672,816 + +0.9 672,816 + +0.3 672,816 + +0.8 672,817 - -0.5 672,817 - +0.5 672,817 - +0.6 672,817 - +1.3 672,819 + -0.4 672,819 + +1.9 672,819 + -1.1 672,820 - -1.7 672,820 - +0.0 672,832 + -0.4 672,832 + -0.5 672,832 + -0.5 672,832 + +1.0 672,832 + -0.0 672,832 + +1.5 672,832 + +0.4 672,832 + -0.9 672,832 + +1.0 672,833 - +2.6 672,833 - +0.1 672,833 - +0.8 672,833 - +2.2 672,833 - +0.5 672,932 + -0.4 672,932 + +0.3 672,933 - -1.5 672,933 - +1.5 672,933 - +1.5 672,961 + AO353_03155 0.13 +0.7 672,961 + AO353_03155 0.13 -2.0 672,961 + AO353_03155 0.13 -0.9 672,961 + AO353_03155 0.13 +0.8 672,961 + AO353_03155 0.13 -0.5 672,961 + AO353_03155 0.13 -0.6 672,961 + AO353_03155 0.13 -0.1 672,961 + AO353_03155 0.13 -1.3 672,962 - AO353_03155 0.14 -0.5 672,962 - AO353_03155 0.14 +0.2 672,962 - AO353_03155 0.14 -2.4 672,962 - AO353_03155 0.14 -0.3 672,968 + AO353_03155 0.15 -0.3 672,968 + AO353_03155 0.15 -0.3 672,968 + AO353_03155 0.15 +1.7 672,968 + AO353_03155 0.15 -1.2 672,968 + AO353_03155 0.15 -0.5 672,969 - AO353_03155 0.16 -1.8 672,969 - AO353_03155 0.16 -0.5 672,969 - AO353_03155 0.16 -1.4 672,969 - AO353_03155 0.16 -0.8 672,971 + AO353_03155 0.16 -0.3 672,971 + -0.3 672,971 + AO353_03155 0.16 -1.3 672,971 + AO353_03155 0.16 +0.2 672,971 + AO353_03155 0.16 -0.4 672,971 + AO353_03155 0.16 -0.0 672,971 + AO353_03155 0.16 +0.1 672,972 - AO353_03155 0.16 -0.3 672,972 - AO353_03155 0.16 -2.0 672,972 - AO353_03155 0.16 +0.8 672,972 - AO353_03155 0.16 +1.2 672,972 - AO353_03155 0.16 +0.3 672,972 - AO353_03155 0.16 -1.2 673,017 + AO353_03155 0.28 +1.7 673,017 + AO353_03155 0.28 -0.3 673,017 + AO353_03155 0.28 +0.8 673,018 - AO353_03155 0.29 -0.0 673,018 - AO353_03155 0.29 -0.5 673,018 - AO353_03155 0.29 -0.7 673,018 - AO353_03155 0.29 -2.8 673,018 - AO353_03155 0.29 -1.0 673,043 - AO353_03155 0.35 -0.2 673,047 + AO353_03155 0.37 +0.5 673,047 + AO353_03155 0.37 +0.1 673,047 + AO353_03155 0.37 -0.9 673,047 + AO353_03155 0.37 +0.2 673,047 + AO353_03155 0.37 +0.3 673,047 + AO353_03155 0.37 +1.0 673,047 + AO353_03155 0.37 -0.0 673,048 - AO353_03155 0.37 +1.1 673,048 - AO353_03155 0.37 -0.4 673,048 - AO353_03155 0.37 -0.4 673,048 - AO353_03155 0.37 +0.2 673,048 - AO353_03155 0.37 +3.5 673,048 - AO353_03155 0.37 -0.6 673,048 - AO353_03155 0.37 +0.1 673,048 - AO353_03155 0.37 -0.4 673,048 - AO353_03155 0.37 -0.5 673,048 - AO353_03155 0.37 +0.5 673,061 - AO353_03155 0.40 +0.5 673,093 + AO353_03155 0.49 -2.7 673,094 - AO353_03155 0.49 -0.3 673,108 + AO353_03155 0.53 +0.2 673,108 + AO353_03155 0.53 +0.3 673,108 + AO353_03155 0.53 +2.8 673,108 + AO353_03155 0.53 +0.4 673,112 + AO353_03155 0.54 -1.9 673,112 + AO353_03155 0.54 +0.9 673,112 + AO353_03155 0.54 -0.8 673,113 - AO353_03155 0.54 +1.0 673,113 - AO353_03155 0.54 -0.4 673,113 - AO353_03155 0.54 -0.5 673,113 - AO353_03155 0.54 -1.0 673,113 - AO353_03155 0.54 -1.2 673,113 - AO353_03155 0.54 -0.6 673,131 + AO353_03155 0.59 +1.1 673,132 - AO353_03155 0.59 -0.5 673,132 - AO353_03155 0.59 +0.4 673,132 - AO353_03155 0.59 +0.3 673,267 + -1.6 673,267 + +1.2 673,268 - +3.1 673,268 - -2.0 673,307 - +2.7 673,307 - -0.2 673,332 + -1.4 673,332 + -0.8 673,333 - +0.7 673,333 - -1.6 673,333 - +1.5 673,333 - +1.3 673,333 - -0.3 673,333 - -0.3 673,333 - +0.8 673,359 + +1.0 673,360 - +1.5 673,371 + +2.1 673,371 + -1.6 673,372 - +0.6 673,372 - +2.0 673,372 - -0.3 673,378 + +1.2 673,378 + +0.7 673,378 + +0.7 673,379 - -0.8 673,379 - -0.2 673,379 - -2.0 673,379 - +0.8 673,379 - -1.3 673,513 - -0.4 673,553 - -0.7 673,649 + -2.5 673,769 + AO353_03160 0.13 -0.0 673,769 + AO353_03160 0.13 -1.4 673,769 + AO353_03160 0.13 +1.2 673,784 + AO353_03160 0.14 -2.4 673,785 - AO353_03160 0.14 -1.3 673,860 + AO353_03160 0.19 -2.5 673,860 + AO353_03160 0.19 -0.5 673,938 + AO353_03160 0.24 +2.9 673,938 + AO353_03160 0.24 +0.2 673,938 + AO353_03160 0.24 +0.7 673,939 - AO353_03160 0.24 +0.7 673,939 - AO353_03160 0.24 -0.8 673,939 - AO353_03160 0.24 +2.0 673,939 - AO353_03160 0.24 -0.5 673,939 - AO353_03160 0.24 -1.2 673,939 - AO353_03160 0.24 +2.0 673,939 - AO353_03160 0.24 +2.7 673,939 - AO353_03160 0.24 -0.0 673,939 - AO353_03160 0.24 -1.7
Or see this region's nucleotide sequence