Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02990

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02985 and AO353_02990 are separated by 506 nucleotidesAO353_02990 and AO353_02995 are separated by 122 nucleotides AO353_02985: AO353_02985 - threonine aldolase, at 633,066 to 634,070 _02985 AO353_02990: AO353_02990 - 6,7-dimethyl-8-ribityllumazine synthase, at 634,577 to 635,086 _02990 AO353_02995: AO353_02995 - succinylglutamate desuccinylase, at 635,209 to 636,219 _02995 Position (kb) 634 635 636Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 633.622 kb on + strand, within AO353_02985at 633.623 kb on - strand, within AO353_02985at 633.623 kb on - strand, within AO353_02985at 633.623 kb on - strand, within AO353_02985at 633.623 kb on - strand, within AO353_02985at 633.636 kb on + strand, within AO353_02985at 633.636 kb on + strand, within AO353_02985at 633.636 kb on + strand, within AO353_02985at 633.637 kb on - strand, within AO353_02985at 633.637 kb on - strand, within AO353_02985at 633.637 kb on - strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.806 kb on - strand, within AO353_02985at 633.806 kb on - strand, within AO353_02985at 633.806 kb on - strand, within AO353_02985at 633.806 kb on - strand, within AO353_02985at 633.806 kb on - strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strandat 633.809 kb on + strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.838 kb on + strand, within AO353_02985at 633.838 kb on + strand, within AO353_02985at 633.838 kb on + strand, within AO353_02985at 633.838 kb on + strand, within AO353_02985at 633.838 kb on + strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 634.088 kb on - strandat 634.110 kb on + strandat 634.136 kb on + strandat 634.137 kb on - strandat 634.137 kb on - strandat 634.137 kb on - strandat 634.137 kb on - strandat 634.157 kb on + strandat 634.157 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.209 kb on + strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.210 kb on - strandat 634.211 kb on + strandat 634.211 kb on + strandat 634.212 kb on - strandat 634.212 kb on - strandat 634.212 kb on - strandat 634.212 kb on - strandat 634.245 kb on + strandat 634.245 kb on + strandat 634.245 kb on + strandat 634.245 kb on + strandat 634.245 kb on + strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.246 kb on - strandat 634.324 kb on + strandat 634.432 kb on + strandat 634.432 kb on + strandat 634.432 kb on + strandat 634.432 kb on + strandat 634.433 kb on - strandat 634.433 kb on - strandat 634.491 kb on + strandat 634.492 kb on - strandat 634.492 kb on - strandat 634.492 kb on - strandat 634.492 kb on - strandat 634.492 kb on - strandat 634.515 kb on + strandat 634.515 kb on + strandat 634.515 kb on + strandat 634.515 kb on + strandat 634.515 kb on + strandat 634.515 kb on + strandat 634.516 kb on - strandat 634.516 kb on - strandat 634.516 kb on - strandat 634.516 kb on - strandat 634.516 kb on - strandat 634.521 kb on + strandat 634.521 kb on + strandat 634.521 kb on + strandat 634.522 kb on - strandat 634.522 kb on - strandat 634.540 kb on - strandat 634.679 kb on - strand, within AO353_02990at 634.824 kb on + strand, within AO353_02990at 634.825 kb on - strand, within AO353_02990at 634.844 kb on + strand, within AO353_02990at 634.844 kb on + strand, within AO353_02990at 634.844 kb on + strand, within AO353_02990at 634.844 kb on + strand, within AO353_02990at 634.844 kb on + strand, within AO353_02990at 634.844 kb on + strand, within AO353_02990at 634.845 kb on - strand, within AO353_02990at 634.845 kb on - strand, within AO353_02990at 634.845 kb on - strand, within AO353_02990at 635.076 kb on + strandat 635.085 kb on - strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.106 kb on - strandat 635.106 kb on - strandat 635.112 kb on - strandat 635.143 kb on + strandat 635.189 kb on + strandat 635.351 kb on + strand, within AO353_02995at 635.352 kb on - strand, within AO353_02995at 635.609 kb on + strand, within AO353_02995at 635.609 kb on + strand, within AO353_02995at 635.609 kb on + strand, within AO353_02995at 635.610 kb on - strand, within AO353_02995at 635.610 kb on - strand, within AO353_02995at 635.610 kb on - strand, within AO353_02995at 635.610 kb on - strand, within AO353_02995at 635.610 kb on - strand, within AO353_02995at 635.615 kb on + strand, within AO353_02995at 635.616 kb on - strand, within AO353_02995at 635.616 kb on - strand, within AO353_02995at 635.726 kb on + strand, within AO353_02995at 635.777 kb on + strand, within AO353_02995at 635.778 kb on - strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.962 kb on - strand, within AO353_02995at 635.962 kb on - strand, within AO353_02995at 635.962 kb on - strand, within AO353_02995at 636.017 kb on - strand, within AO353_02995at 636.017 kb on - strand, within AO353_02995

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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633,622 + AO353_02985 0.55 -2.0
633,623 - AO353_02985 0.55 -0.1
633,623 - AO353_02985 0.55 -0.1
633,623 - AO353_02985 0.55 -0.4
633,623 - AO353_02985 0.55 -2.0
633,636 + AO353_02985 0.57 -0.3
633,636 + AO353_02985 0.57 +0.5
633,636 + AO353_02985 0.57 -2.2
633,637 - AO353_02985 0.57 +1.7
633,637 - AO353_02985 0.57 -1.1
633,637 - AO353_02985 0.57 +0.2
633,805 + AO353_02985 0.74 +0.2
633,805 + AO353_02985 0.74 -1.2
633,805 + AO353_02985 0.74 +0.8
633,805 + AO353_02985 0.74 +1.1
633,805 + AO353_02985 0.74 -1.4
633,805 + AO353_02985 0.74 -0.3
633,806 - AO353_02985 0.74 -0.1
633,806 - AO353_02985 0.74 -0.9
633,806 - AO353_02985 0.74 +0.5
633,806 - AO353_02985 0.74 -0.2
633,806 - AO353_02985 0.74 -1.9
633,809 + AO353_02985 0.74 -0.3
633,809 + AO353_02985 0.74 -0.2
633,809 + AO353_02985 0.74 -0.8
633,809 + AO353_02985 0.74 +0.6
633,809 + AO353_02985 0.74 +1.0
633,809 + AO353_02985 0.74 -1.9
633,809 + AO353_02985 0.74 -1.9
633,809 + +0.9
633,809 + AO353_02985 0.74 +0.6
633,810 - AO353_02985 0.74 -1.3
633,810 - AO353_02985 0.74 +1.8
633,810 - AO353_02985 0.74 -0.4
633,810 - AO353_02985 0.74 -1.6
633,810 - AO353_02985 0.74 -1.3
633,810 - AO353_02985 0.74 -0.6
633,810 - AO353_02985 0.74 +0.5
633,810 - AO353_02985 0.74 -1.8
633,810 - AO353_02985 0.74 -0.8
633,811 + AO353_02985 0.74 +0.2
633,811 + AO353_02985 0.74 +0.5
633,811 + AO353_02985 0.74 +2.0
633,811 + AO353_02985 0.74 +0.7
633,811 + AO353_02985 0.74 +1.9
633,811 + AO353_02985 0.74 +1.5
633,811 + AO353_02985 0.74 +1.9
633,811 + AO353_02985 0.74 +0.1
633,811 + AO353_02985 0.74 -0.2
633,811 + AO353_02985 0.74 -1.9
633,811 + AO353_02985 0.74 -1.6
633,811 + AO353_02985 0.74 +0.3
633,811 + AO353_02985 0.74 +0.8
633,812 - AO353_02985 0.74 +1.8
633,812 - AO353_02985 0.74 +2.0
633,812 - AO353_02985 0.74 +1.1
633,812 - AO353_02985 0.74 +2.5
633,812 - AO353_02985 0.74 +0.4
633,812 - AO353_02985 0.74 -1.6
633,812 - AO353_02985 0.74 -1.2
633,812 - AO353_02985 0.74 -0.2
633,812 - AO353_02985 0.74 +1.3
633,812 - AO353_02985 0.74 -0.2
633,812 - AO353_02985 0.74 -0.8
633,812 - AO353_02985 0.74 -1.5
633,812 - AO353_02985 0.74 -0.6
633,812 - AO353_02985 0.74 +1.0
633,812 - AO353_02985 0.74 -1.6
633,812 - AO353_02985 0.74 +1.9
633,812 - AO353_02985 0.74 -2.7
633,812 - AO353_02985 0.74 -1.2
633,812 - AO353_02985 0.74 -0.2
633,812 - AO353_02985 0.74 -0.3
633,812 - AO353_02985 0.74 +1.4
633,812 - AO353_02985 0.74 +2.4
633,812 - AO353_02985 0.74 +0.6
633,812 - AO353_02985 0.74 +0.4
633,812 - AO353_02985 0.74 -0.2
633,812 - AO353_02985 0.74 +0.4
633,838 + AO353_02985 0.77 -0.5
633,838 + AO353_02985 0.77 +2.3
633,838 + AO353_02985 0.77 -0.3
633,838 + AO353_02985 0.77 +2.1
633,838 + AO353_02985 0.77 +0.2
633,839 - AO353_02985 0.77 -0.6
633,839 - AO353_02985 0.77 +0.1
633,839 - AO353_02985 0.77 -1.3
633,839 - AO353_02985 0.77 +0.4
633,839 - AO353_02985 0.77 +1.0
633,839 - AO353_02985 0.77 +0.4
633,839 - AO353_02985 0.77 +1.4
633,839 - AO353_02985 0.77 +1.8
634,088 - +2.4
634,110 + +1.5
634,136 + +1.0
634,137 - -0.8
634,137 - -1.4
634,137 - -0.3
634,137 - +1.8
634,157 + +1.1
634,157 + +2.2
634,209 + -1.4
634,209 + -0.1
634,209 + -0.2
634,209 + +1.6
634,209 + +0.9
634,209 + -0.5
634,209 + +0.4
634,209 + +0.1
634,209 + +2.4
634,209 + -2.3
634,209 + +2.4
634,209 + +7.6
634,209 + +0.7
634,209 + +1.1
634,209 + -0.2
634,209 + -0.1
634,209 + -0.1
634,209 + -0.6
634,210 - +0.7
634,210 - -0.7
634,210 - -2.0
634,210 - +1.1
634,210 - -0.1
634,210 - -0.2
634,210 - -2.0
634,210 - -1.4
634,210 - +0.9
634,210 - -1.3
634,210 - +0.9
634,210 - -1.3
634,210 - +1.0
634,210 - +0.7
634,210 - -1.1
634,210 - -1.4
634,210 - +0.0
634,210 - +2.2
634,210 - +0.3
634,210 - +0.8
634,210 - -0.9
634,210 - +0.8
634,210 - -0.6
634,210 - -0.7
634,210 - -2.5
634,210 - +0.1
634,210 - -0.3
634,211 + -1.9
634,211 + -0.2
634,212 - -0.6
634,212 - +1.4
634,212 - -0.5
634,212 - +0.6
634,245 + -1.3
634,245 + +0.2
634,245 + -1.5
634,245 + -1.9
634,245 + -1.8
634,246 - -1.2
634,246 - +2.5
634,246 - -0.9
634,246 - -1.2
634,246 - -1.7
634,246 - -0.6
634,246 - +1.5
634,246 - -0.5
634,246 - +1.9
634,246 - -1.4
634,246 - -0.6
634,246 - -0.6
634,246 - +1.1
634,246 - -0.1
634,324 + -0.9
634,432 + +0.8
634,432 + +1.7
634,432 + +0.1
634,432 + +1.5
634,433 - -1.1
634,433 - +0.9
634,491 + +0.2
634,492 - +0.4
634,492 - -0.7
634,492 - -1.2
634,492 - -2.4
634,492 - -0.3
634,515 + +0.8
634,515 + -1.9
634,515 + +1.8
634,515 + -1.0
634,515 + +1.3
634,515 + -2.1
634,516 - +2.0
634,516 - -1.2
634,516 - +1.3
634,516 - +1.7
634,516 - +0.6
634,521 + -1.2
634,521 + -0.6
634,521 + -1.9
634,522 - +1.2
634,522 - +0.4
634,540 - +3.4
634,679 - AO353_02990 0.20 -0.6
634,824 + AO353_02990 0.48 -0.8
634,825 - AO353_02990 0.49 -0.9
634,844 + AO353_02990 0.52 -1.6
634,844 + AO353_02990 0.52 +0.1
634,844 + AO353_02990 0.52 -2.1
634,844 + AO353_02990 0.52 -0.9
634,844 + AO353_02990 0.52 +0.4
634,844 + AO353_02990 0.52 -0.4
634,845 - AO353_02990 0.53 -1.4
634,845 - AO353_02990 0.53 -0.2
634,845 - AO353_02990 0.53 +0.2
635,076 + -1.0
635,085 - +0.3
635,105 + +0.9
635,105 + +0.3
635,106 - +0.4
635,106 - -1.3
635,112 - -0.8
635,143 + -1.4
635,189 + -0.4
635,351 + AO353_02995 0.14 +0.2
635,352 - AO353_02995 0.14 +1.1
635,609 + AO353_02995 0.40 -0.4
635,609 + AO353_02995 0.40 +0.2
635,609 + AO353_02995 0.40 +0.1
635,610 - AO353_02995 0.40 +1.3
635,610 - AO353_02995 0.40 +0.0
635,610 - AO353_02995 0.40 +0.4
635,610 - AO353_02995 0.40 +1.5
635,610 - AO353_02995 0.40 +1.2
635,615 + AO353_02995 0.40 +1.0
635,616 - AO353_02995 0.40 -0.5
635,616 - AO353_02995 0.40 +0.2
635,726 + AO353_02995 0.51 +2.5
635,777 + AO353_02995 0.56 +2.5
635,778 - AO353_02995 0.56 +1.0
635,961 + AO353_02995 0.74 +1.2
635,961 + AO353_02995 0.74 +1.6
635,961 + AO353_02995 0.74 +0.7
635,961 + AO353_02995 0.74 +2.7
635,961 + AO353_02995 0.74 +0.8
635,961 + AO353_02995 0.74 +0.5
635,962 - AO353_02995 0.74 -0.7
635,962 - AO353_02995 0.74 -0.2
635,962 - AO353_02995 0.74 +1.5
636,017 - AO353_02995 0.80 +2.7
636,017 - AO353_02995 0.80 +2.8

Or see this region's nucleotide sequence