Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02550

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02545 and AO353_02550 are separated by 91 nucleotidesAO353_02550 and AO353_02555 are separated by 140 nucleotides AO353_02545: AO353_02545 - MFS transporter, at 541,764 to 542,948 _02545 AO353_02550: AO353_02550 - TetR family transcriptional regulator, at 543,040 to 543,579 _02550 AO353_02555: AO353_02555 - histidine kinase, at 543,720 to 547,190 _02555 Position (kb) 543 544Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 542.077 kb on - strand, within AO353_02545at 542.077 kb on - strand, within AO353_02545at 542.199 kb on + strand, within AO353_02545at 542.199 kb on + strand, within AO353_02545at 542.199 kb on + strand, within AO353_02545at 542.243 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.352 kb on + strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.353 kb on - strand, within AO353_02545at 542.419 kb on + strand, within AO353_02545at 542.419 kb on + strand, within AO353_02545at 542.419 kb on + strand, within AO353_02545at 542.419 kb on + strand, within AO353_02545at 542.419 kb on + strand, within AO353_02545at 542.419 kb on + strand, within AO353_02545at 542.419 kb on + strand, within AO353_02545at 542.420 kb on - strand, within AO353_02545at 542.485 kb on + strand, within AO353_02545at 542.486 kb on - strand, within AO353_02545at 542.546 kb on + strand, within AO353_02545at 542.598 kb on + strand, within AO353_02545at 542.599 kb on - strand, within AO353_02545at 542.599 kb on - strand, within AO353_02545at 542.599 kb on - strand, within AO353_02545at 542.599 kb on - strand, within AO353_02545at 542.675 kb on + strand, within AO353_02545at 542.696 kb on + strand, within AO353_02545at 542.697 kb on - strand, within AO353_02545at 542.722 kb on - strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.791 kb on + strand, within AO353_02545at 542.792 kb on - strand, within AO353_02545at 542.792 kb on - strand, within AO353_02545at 542.846 kb on - strandat 542.854 kb on + strandat 542.855 kb on - strandat 542.855 kb on - strandat 542.855 kb on - strandat 542.895 kb on + strandat 542.895 kb on + strandat 542.895 kb on + strandat 543.046 kb on - strandat 543.048 kb on + strandat 543.048 kb on + strandat 543.048 kb on + strandat 543.048 kb on + strandat 543.048 kb on + strandat 543.048 kb on + strandat 543.049 kb on - strandat 543.049 kb on - strandat 543.049 kb on - strandat 543.049 kb on - strandat 543.049 kb on - strandat 543.049 kb on - strandat 543.049 kb on - strandat 543.049 kb on - strandat 543.049 kb on - strandat 543.049 kb on - strandat 543.060 kb on - strandat 543.076 kb on - strandat 543.196 kb on + strand, within AO353_02550at 543.319 kb on + strand, within AO353_02550at 543.320 kb on - strand, within AO353_02550at 543.320 kb on - strand, within AO353_02550at 543.320 kb on - strand, within AO353_02550at 543.320 kb on - strand, within AO353_02550at 543.320 kb on - strand, within AO353_02550at 543.392 kb on - strand, within AO353_02550at 543.392 kb on - strand, within AO353_02550at 543.429 kb on - strand, within AO353_02550at 543.597 kb on + strandat 543.597 kb on + strandat 543.597 kb on + strandat 543.597 kb on + strandat 543.597 kb on + strandat 543.598 kb on - strandat 543.598 kb on - strandat 543.598 kb on - strandat 543.598 kb on - strandat 543.601 kb on + strandat 543.601 kb on + strandat 543.601 kb on + strandat 543.601 kb on + strandat 543.601 kb on + strandat 543.601 kb on + strandat 543.602 kb on - strandat 543.602 kb on - strandat 543.602 kb on - strandat 543.704 kb on + strandat 543.705 kb on - strandat 543.705 kb on - strandat 543.716 kb on + strandat 543.716 kb on + strandat 543.716 kb on + strandat 543.716 kb on + strandat 543.716 kb on + strandat 543.717 kb on - strandat 543.717 kb on - strandat 543.717 kb on - strandat 543.762 kb on + strandat 543.762 kb on + strandat 543.762 kb on + strandat 543.762 kb on + strandat 543.762 kb on + strandat 543.762 kb on + strandat 543.762 kb on + strandat 543.762 kb on + strandat 543.762 kb on + strandat 543.762 kb on + strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.763 kb on - strandat 543.764 kb on + strandat 543.765 kb on - strandat 543.792 kb on + strandat 543.843 kb on + strandat 543.843 kb on + strandat 543.843 kb on + strandat 543.843 kb on + strandat 543.843 kb on + strandat 543.844 kb on - strandat 543.844 kb on - strandat 543.844 kb on - strandat 543.844 kb on - strandat 543.844 kb on - strandat 543.844 kb on - strandat 543.864 kb on + strandat 543.864 kb on + strandat 543.865 kb on - strandat 543.865 kb on - strandat 543.936 kb on + strandat 543.936 kb on + strandat 543.937 kb on - strandat 544.102 kb on + strand, within AO353_02555at 544.102 kb on + strand, within AO353_02555at 544.103 kb on - strand, within AO353_02555at 544.110 kb on + strand, within AO353_02555at 544.110 kb on + strand, within AO353_02555at 544.110 kb on + strand, within AO353_02555at 544.111 kb on - strand, within AO353_02555at 544.111 kb on - strand, within AO353_02555at 544.111 kb on - strand, within AO353_02555at 544.111 kb on - strand, within AO353_02555at 544.111 kb on - strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.359 kb on + strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.360 kb on - strand, within AO353_02555at 544.368 kb on + strand, within AO353_02555at 544.368 kb on + strand, within AO353_02555at 544.368 kb on + strand, within AO353_02555at 544.368 kb on + strand, within AO353_02555at 544.368 kb on + strand, within AO353_02555at 544.368 kb on + strand, within AO353_02555at 544.368 kb on + strand, within AO353_02555at 544.369 kb on - strand, within AO353_02555at 544.369 kb on - strand, within AO353_02555at 544.369 kb on - strand, within AO353_02555at 544.369 kb on - strand, within AO353_02555at 544.425 kb on + strand, within AO353_02555at 544.426 kb on - strand, within AO353_02555at 544.426 kb on - strand, within AO353_02555at 544.426 kb on - strand, within AO353_02555at 544.426 kb on - strand, within AO353_02555at 544.579 kb on - strand, within AO353_02555

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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542,077 - AO353_02545 0.26 +0.3
542,077 - AO353_02545 0.26 +0.2
542,199 + AO353_02545 0.37 +0.1
542,199 + AO353_02545 0.37 +0.6
542,199 + AO353_02545 0.37 +0.4
542,243 + AO353_02545 0.40 -0.1
542,352 + AO353_02545 0.50 +0.2
542,352 + AO353_02545 0.50 -0.0
542,352 + AO353_02545 0.50 +0.5
542,352 + AO353_02545 0.50 -1.8
542,352 + AO353_02545 0.50 -1.5
542,352 + AO353_02545 0.50 -0.8
542,352 + AO353_02545 0.50 -0.3
542,352 + AO353_02545 0.50 +0.1
542,352 + AO353_02545 0.50 -1.6
542,352 + AO353_02545 0.50 -0.7
542,352 + AO353_02545 0.50 +0.4
542,352 + AO353_02545 0.50 -2.1
542,352 + AO353_02545 0.50 -0.3
542,352 + AO353_02545 0.50 +2.1
542,353 - AO353_02545 0.50 -1.1
542,353 - AO353_02545 0.50 +0.3
542,353 - AO353_02545 0.50 -0.6
542,353 - AO353_02545 0.50 -1.5
542,353 - AO353_02545 0.50 -1.3
542,353 - AO353_02545 0.50 -0.8
542,353 - AO353_02545 0.50 -0.7
542,353 - AO353_02545 0.50 -2.9
542,353 - AO353_02545 0.50 +1.5
542,353 - AO353_02545 0.50 -2.5
542,353 - AO353_02545 0.50 +1.3
542,353 - AO353_02545 0.50 -0.7
542,419 + AO353_02545 0.55 +0.5
542,419 + AO353_02545 0.55 +0.9
542,419 + AO353_02545 0.55 -1.3
542,419 + AO353_02545 0.55 +2.1
542,419 + AO353_02545 0.55 -0.1
542,419 + AO353_02545 0.55 +0.7
542,419 + AO353_02545 0.55 +1.8
542,420 - AO353_02545 0.55 -2.0
542,485 + AO353_02545 0.61 -0.8
542,486 - AO353_02545 0.61 -1.0
542,546 + AO353_02545 0.66 -0.5
542,598 + AO353_02545 0.70 -0.8
542,599 - AO353_02545 0.70 -0.0
542,599 - AO353_02545 0.70 -1.0
542,599 - AO353_02545 0.70 -0.1
542,599 - AO353_02545 0.70 -0.6
542,675 + AO353_02545 0.77 +0.3
542,696 + AO353_02545 0.79 -0.1
542,697 - AO353_02545 0.79 +1.3
542,722 - AO353_02545 0.81 -1.2
542,791 + AO353_02545 0.87 -0.2
542,791 + AO353_02545 0.87 -0.5
542,791 + AO353_02545 0.87 -2.8
542,791 + AO353_02545 0.87 -0.5
542,791 + AO353_02545 0.87 -1.8
542,791 + AO353_02545 0.87 +0.6
542,791 + AO353_02545 0.87 -0.2
542,791 + AO353_02545 0.87 -0.3
542,791 + AO353_02545 0.87 -2.0
542,791 + AO353_02545 0.87 +0.2
542,791 + AO353_02545 0.87 -1.3
542,791 + AO353_02545 0.87 -1.3
542,791 + AO353_02545 0.87 -2.9
542,792 - AO353_02545 0.87 -1.0
542,792 - AO353_02545 0.87 +1.3
542,846 - -2.6
542,854 + -2.2
542,855 - +0.9
542,855 - -0.1
542,855 - -0.8
542,895 + -1.4
542,895 + -0.8
542,895 + -1.0
543,046 - -1.1
543,048 + -1.5
543,048 + -1.2
543,048 + +3.8
543,048 + -2.1
543,048 + +0.5
543,048 + -0.1
543,049 - -0.8
543,049 - -3.1
543,049 - -0.1
543,049 - -1.5
543,049 - +0.5
543,049 - -0.7
543,049 - +0.2
543,049 - -1.5
543,049 - -2.5
543,049 - -2.4
543,060 - -1.9
543,076 - -1.4
543,196 + AO353_02550 0.29 -1.3
543,319 + AO353_02550 0.52 -3.2
543,320 - AO353_02550 0.52 -1.8
543,320 - AO353_02550 0.52 -3.1
543,320 - AO353_02550 0.52 -1.0
543,320 - AO353_02550 0.52 -1.4
543,320 - AO353_02550 0.52 -1.3
543,392 - AO353_02550 0.65 -2.8
543,392 - AO353_02550 0.65 -2.2
543,429 - AO353_02550 0.72 -1.7
543,597 + -1.4
543,597 + -2.0
543,597 + -2.9
543,597 + -0.6
543,597 + -0.1
543,598 - +1.8
543,598 - -2.3
543,598 - +0.2
543,598 - -0.3
543,601 + -1.0
543,601 + -1.4
543,601 + +1.2
543,601 + -1.2
543,601 + +0.5
543,601 + +1.5
543,602 - +0.5
543,602 - +1.0
543,602 - +0.9
543,704 + +0.2
543,705 - +0.4
543,705 - +2.5
543,716 + +4.1
543,716 + +0.4
543,716 + +0.4
543,716 + -0.2
543,716 + -0.8
543,717 - -1.4
543,717 - -2.7
543,717 - +1.1
543,762 + -0.8
543,762 + -1.8
543,762 + -0.5
543,762 + -2.5
543,762 + -2.6
543,762 + -1.6
543,762 + -1.3
543,762 + -3.1
543,762 + -1.7
543,762 + -0.5
543,763 - -1.4
543,763 - -3.0
543,763 - -0.3
543,763 - -1.1
543,763 - -2.0
543,763 - -2.0
543,763 - -1.8
543,763 - -1.4
543,763 - -1.8
543,763 - -0.5
543,763 - -1.4
543,763 - -0.1
543,763 - -1.3
543,764 + -0.7
543,765 - -0.5
543,792 + -1.8
543,843 + -1.3
543,843 + -3.2
543,843 + -2.0
543,843 + -1.3
543,843 + -2.1
543,844 - -0.1
543,844 - -0.1
543,844 - +0.9
543,844 - -0.8
543,844 - -0.9
543,844 - -0.8
543,864 + -2.4
543,864 + -3.6
543,865 - -0.9
543,865 - -1.3
543,936 + -2.3
543,936 + -1.8
543,937 - -0.1
544,102 + AO353_02555 0.11 -1.8
544,102 + AO353_02555 0.11 -0.1
544,103 - AO353_02555 0.11 +0.9
544,110 + AO353_02555 0.11 -1.4
544,110 + AO353_02555 0.11 -1.2
544,110 + AO353_02555 0.11 -1.0
544,111 - AO353_02555 0.11 -3.6
544,111 - AO353_02555 0.11 -2.0
544,111 - AO353_02555 0.11 -2.2
544,111 - AO353_02555 0.11 -0.3
544,111 - AO353_02555 0.11 -2.4
544,359 + AO353_02555 0.18 -1.9
544,359 + AO353_02555 0.18 -0.8
544,359 + AO353_02555 0.18 -1.3
544,359 + AO353_02555 0.18 -2.0
544,359 + AO353_02555 0.18 -0.5
544,359 + AO353_02555 0.18 -2.2
544,359 + AO353_02555 0.18 -1.9
544,359 + AO353_02555 0.18 -0.0
544,359 + AO353_02555 0.18 -0.5
544,359 + AO353_02555 0.18 -3.5
544,359 + AO353_02555 0.18 -1.2
544,360 - AO353_02555 0.18 -0.7
544,360 - AO353_02555 0.18 -2.5
544,360 - AO353_02555 0.18 -2.6
544,360 - AO353_02555 0.18 -1.0
544,360 - AO353_02555 0.18 -1.9
544,360 - AO353_02555 0.18 -2.7
544,360 - AO353_02555 0.18 -1.7
544,360 - AO353_02555 0.18 -1.8
544,360 - AO353_02555 0.18 +0.9
544,360 - AO353_02555 0.18 -0.8
544,360 - AO353_02555 0.18 -3.4
544,360 - AO353_02555 0.18 -0.7
544,360 - AO353_02555 0.18 -2.9
544,360 - AO353_02555 0.18 -0.3
544,360 - AO353_02555 0.18 -1.8
544,360 - AO353_02555 0.18 -2.0
544,368 + AO353_02555 0.19 -2.3
544,368 + AO353_02555 0.19 -4.3
544,368 + AO353_02555 0.19 -2.9
544,368 + AO353_02555 0.19 -3.5
544,368 + AO353_02555 0.19 -0.5
544,368 + AO353_02555 0.19 -1.8
544,368 + AO353_02555 0.19 -2.6
544,369 - AO353_02555 0.19 -1.5
544,369 - AO353_02555 0.19 -1.0
544,369 - AO353_02555 0.19 -1.9
544,369 - AO353_02555 0.19 -2.1
544,425 + AO353_02555 0.20 -1.4
544,426 - AO353_02555 0.20 -0.5
544,426 - AO353_02555 0.20 -3.6
544,426 - AO353_02555 0.20 -1.9
544,426 - AO353_02555 0.20 -1.2
544,579 - AO353_02555 0.25 +1.5

Or see this region's nucleotide sequence