Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02160 and AO353_02165 are separated by 325 nucleotides AO353_02165 and AO353_02170 are separated by 78 nucleotides AO353_02170 and AO353_02175 are separated by 37 nucleotides AO353_02175 and AO353_02180 are separated by 141 nucleotides
AO353_02160: AO353_02160 - polyphosphate kinase, at 463,608 to 465,131
_02160
AO353_02165: AO353_02165 - FAD-dependent cmnm(5)s(2)U34 oxidoreductase, at 465,457 to 467,451
_02165
AO353_02170: AO353_02170 - hypothetical protein, at 467,530 to 467,757
_02170
AO353_02175: AO353_02175 - carbon storage regulator, at 467,795 to 467,980
_02175
AO353_02180: AO353_02180 - hypothetical protein, at 468,122 to 468,454
_02180
Position (kb) 465
466
467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 464.554 kb on + strand, within AO353_02160 at 464.554 kb on + strand, within AO353_02160 at 464.554 kb on + strand, within AO353_02160 at 464.554 kb on + strand, within AO353_02160 at 464.554 kb on + strand, within AO353_02160 at 464.555 kb on - strand, within AO353_02160 at 464.555 kb on - strand, within AO353_02160 at 464.572 kb on + strand, within AO353_02160 at 465.085 kb on + strand at 465.085 kb on + strand at 465.085 kb on + strand at 465.086 kb on - strand at 465.086 kb on - strand at 465.086 kb on - strand at 465.086 kb on - strand at 465.096 kb on - strand at 465.162 kb on + strand at 465.182 kb on + strand at 465.182 kb on + strand at 465.182 kb on + strand at 465.183 kb on - strand at 465.437 kb on + strand at 465.437 kb on + strand at 465.438 kb on - strand at 465.438 kb on - strand at 465.438 kb on - strand at 465.438 kb on - strand at 465.550 kb on + strand at 465.550 kb on + strand at 465.550 kb on + strand at 465.550 kb on + strand at 465.551 kb on - strand at 465.551 kb on - strand at 465.551 kb on - strand at 465.586 kb on + strand at 465.587 kb on - strand at 465.587 kb on - strand at 465.763 kb on + strand, within AO353_02165 at 465.783 kb on + strand, within AO353_02165 at 465.783 kb on + strand, within AO353_02165 at 465.783 kb on + strand, within AO353_02165 at 465.783 kb on + strand, within AO353_02165 at 465.783 kb on + strand, within AO353_02165 at 465.783 kb on + strand, within AO353_02165 at 465.783 kb on + strand, within AO353_02165 at 465.783 kb on + strand, within AO353_02165 at 465.784 kb on - strand, within AO353_02165 at 465.784 kb on - strand, within AO353_02165 at 465.784 kb on - strand, within AO353_02165 at 465.784 kb on - strand, within AO353_02165 at 465.847 kb on + strand, within AO353_02165 at 465.847 kb on + strand, within AO353_02165 at 465.847 kb on + strand, within AO353_02165 at 465.847 kb on + strand, within AO353_02165 at 465.847 kb on + strand, within AO353_02165 at 465.848 kb on - strand, within AO353_02165 at 465.848 kb on - strand, within AO353_02165 at 465.848 kb on - strand, within AO353_02165 at 465.848 kb on - strand, within AO353_02165 at 465.900 kb on - strand, within AO353_02165 at 466.337 kb on + strand, within AO353_02165 at 466.338 kb on - strand, within AO353_02165 at 466.397 kb on - strand, within AO353_02165 at 466.657 kb on + strand, within AO353_02165 at 466.658 kb on - strand, within AO353_02165 at 466.658 kb on - strand, within AO353_02165 at 466.658 kb on - strand, within AO353_02165 at 466.745 kb on + strand, within AO353_02165 at 466.745 kb on + strand, within AO353_02165 at 466.746 kb on - strand, within AO353_02165 at 466.746 kb on - strand, within AO353_02165 at 466.746 kb on - strand, within AO353_02165 at 466.824 kb on - strand, within AO353_02165 at 466.824 kb on - strand, within AO353_02165 at 466.824 kb on - strand, within AO353_02165 at 466.960 kb on + strand, within AO353_02165 at 466.960 kb on + strand, within AO353_02165 at 466.960 kb on + strand, within AO353_02165 at 466.960 kb on + strand, within AO353_02165 at 466.960 kb on + strand, within AO353_02165 at 466.961 kb on - strand, within AO353_02165 at 466.961 kb on - strand, within AO353_02165 at 467.078 kb on + strand, within AO353_02165 at 467.079 kb on - strand, within AO353_02165 at 467.132 kb on + strand, within AO353_02165 at 467.132 kb on + strand, within AO353_02165 at 467.132 kb on + strand, within AO353_02165 at 467.132 kb on + strand, within AO353_02165 at 467.132 kb on + strand, within AO353_02165 at 467.132 kb on + strand, within AO353_02165 at 467.133 kb on - strand, within AO353_02165 at 467.133 kb on - strand, within AO353_02165 at 467.133 kb on - strand, within AO353_02165 at 467.133 kb on - strand, within AO353_02165 at 467.133 kb on - strand, within AO353_02165 at 467.170 kb on + strand, within AO353_02165 at 467.170 kb on + strand, within AO353_02165 at 467.171 kb on - strand, within AO353_02165 at 467.221 kb on + strand, within AO353_02165 at 467.287 kb on + strand at 467.287 kb on + strand at 467.287 kb on + strand at 467.287 kb on + strand at 467.287 kb on + strand at 467.287 kb on + strand at 467.287 kb on + strand at 467.287 kb on + strand at 467.288 kb on - strand at 467.288 kb on - strand at 467.288 kb on - strand at 467.288 kb on - strand at 467.288 kb on - strand at 467.288 kb on - strand at 467.288 kb on - strand at 467.288 kb on - strand at 467.288 kb on - strand at 467.288 kb on - strand at 467.288 kb on - strand at 467.498 kb on + strand at 467.529 kb on + strand at 467.529 kb on + strand at 467.529 kb on + strand at 467.529 kb on + strand at 467.529 kb on + strand at 467.530 kb on - strand at 467.530 kb on - strand at 467.530 kb on - strand at 467.779 kb on + strand at 467.779 kb on + strand at 467.779 kb on + strand at 467.779 kb on + strand at 467.780 kb on - strand at 467.780 kb on - strand at 467.791 kb on + strand at 467.792 kb on - strand at 467.792 kb on - strand at 467.792 kb on - strand at 467.813 kb on + strand at 467.813 kb on + strand at 467.814 kb on - strand, within AO353_02175 at 467.814 kb on - strand, within AO353_02175 at 467.814 kb on - strand, within AO353_02175 at 467.814 kb on - strand, within AO353_02175 at 467.838 kb on + strand, within AO353_02175 at 467.839 kb on - strand, within AO353_02175 at 467.972 kb on + strand at 467.986 kb on + strand at 467.986 kb on + strand at 467.986 kb on + strand at 467.986 kb on + strand at 467.986 kb on + strand at 467.986 kb on + strand at 467.987 kb on - strand at 467.987 kb on - strand at 467.987 kb on - strand at 467.999 kb on + strand at 468.035 kb on + strand at 468.035 kb on + strand at 468.035 kb on + strand at 468.036 kb on - strand at 468.036 kb on - strand at 468.036 kb on - strand at 468.036 kb on - strand at 468.036 kb on - strand at 468.068 kb on - strand at 468.089 kb on + strand at 468.090 kb on - strand at 468.090 kb on - strand at 468.168 kb on - strand, within AO353_02180 at 468.168 kb on - strand, within AO353_02180 at 468.170 kb on + strand, within AO353_02180 at 468.171 kb on - strand, within AO353_02180 at 468.171 kb on - strand, within AO353_02180 at 468.255 kb on + strand, within AO353_02180 at 468.255 kb on + strand, within AO353_02180 at 468.255 kb on + strand, within AO353_02180 at 468.255 kb on + strand, within AO353_02180 at 468.255 kb on + strand, within AO353_02180 at 468.255 kb on + strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.256 kb on - strand, within AO353_02180 at 468.267 kb on + strand, within AO353_02180 at 468.268 kb on - strand, within AO353_02180 at 468.277 kb on - strand, within AO353_02180 at 468.277 kb on - strand, within AO353_02180 at 468.291 kb on + strand, within AO353_02180 at 468.291 kb on + strand, within AO353_02180 at 468.444 kb on + strand at 468.444 kb on + strand at 468.445 kb on - strand at 468.445 kb on - strand at 468.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 464,554 + AO353_02160 0.62 -2.3 464,554 + AO353_02160 0.62 +0.4 464,554 + AO353_02160 0.62 +1.7 464,554 + AO353_02160 0.62 +1.4 464,554 + AO353_02160 0.62 +0.4 464,555 - AO353_02160 0.62 +0.4 464,555 - AO353_02160 0.62 -1.5 464,572 + AO353_02160 0.63 -0.9 465,085 + +1.1 465,085 + +0.1 465,085 + -2.1 465,086 - -0.3 465,086 - -0.3 465,086 - +0.9 465,086 - +1.1 465,096 - +1.3 465,162 + -0.7 465,182 + -0.6 465,182 + +0.6 465,182 + -0.3 465,183 - -0.2 465,437 + -1.4 465,437 + +0.4 465,438 - -1.9 465,438 - -0.4 465,438 - +0.4 465,438 - -0.2 465,550 + -0.4 465,550 + -0.2 465,550 + -0.4 465,550 + -0.7 465,551 - +0.5 465,551 - -0.7 465,551 - -0.7 465,586 + -0.6 465,587 - -0.7 465,587 - +1.1 465,763 + AO353_02165 0.15 -0.4 465,783 + AO353_02165 0.16 -0.1 465,783 + AO353_02165 0.16 +0.0 465,783 + AO353_02165 0.16 -0.6 465,783 + AO353_02165 0.16 -2.2 465,783 + AO353_02165 0.16 +0.1 465,783 + AO353_02165 0.16 +1.9 465,783 + AO353_02165 0.16 -1.7 465,783 + AO353_02165 0.16 -0.7 465,784 - AO353_02165 0.16 -1.4 465,784 - AO353_02165 0.16 +0.6 465,784 - AO353_02165 0.16 -0.1 465,784 - AO353_02165 0.16 -0.3 465,847 + AO353_02165 0.20 -1.3 465,847 + AO353_02165 0.20 -0.1 465,847 + AO353_02165 0.20 -0.4 465,847 + AO353_02165 0.20 +0.9 465,847 + AO353_02165 0.20 -2.7 465,848 - AO353_02165 0.20 -3.1 465,848 - AO353_02165 0.20 +0.3 465,848 - AO353_02165 0.20 -1.1 465,848 - AO353_02165 0.20 -0.6 465,900 - AO353_02165 0.22 -1.4 466,337 + AO353_02165 0.44 +0.4 466,338 - AO353_02165 0.44 -0.7 466,397 - AO353_02165 0.47 -1.6 466,657 + AO353_02165 0.60 -1.0 466,658 - AO353_02165 0.60 -2.1 466,658 - AO353_02165 0.60 +1.4 466,658 - AO353_02165 0.60 -1.0 466,745 + AO353_02165 0.65 -0.7 466,745 + AO353_02165 0.65 -1.1 466,746 - AO353_02165 0.65 -0.6 466,746 - AO353_02165 0.65 -0.0 466,746 - AO353_02165 0.65 -0.4 466,824 - AO353_02165 0.69 -1.1 466,824 - AO353_02165 0.69 -0.8 466,824 - AO353_02165 0.69 -1.3 466,960 + AO353_02165 0.75 -2.1 466,960 + AO353_02165 0.75 +0.5 466,960 + AO353_02165 0.75 -2.0 466,960 + AO353_02165 0.75 -2.1 466,960 + AO353_02165 0.75 -2.3 466,961 - AO353_02165 0.75 -1.9 466,961 - AO353_02165 0.75 -1.1 467,078 + AO353_02165 0.81 +1.1 467,079 - AO353_02165 0.81 -0.6 467,132 + AO353_02165 0.84 +0.1 467,132 + AO353_02165 0.84 -0.7 467,132 + AO353_02165 0.84 -1.1 467,132 + AO353_02165 0.84 -0.4 467,132 + AO353_02165 0.84 -0.7 467,132 + AO353_02165 0.84 -1.6 467,133 - AO353_02165 0.84 +0.9 467,133 - AO353_02165 0.84 +0.4 467,133 - AO353_02165 0.84 -2.0 467,133 - AO353_02165 0.84 -2.0 467,133 - AO353_02165 0.84 -0.3 467,170 + AO353_02165 0.86 -2.6 467,170 + AO353_02165 0.86 -1.5 467,171 - AO353_02165 0.86 -1.9 467,221 + AO353_02165 0.88 -2.4 467,287 + -0.7 467,287 + +2.2 467,287 + -1.0 467,287 + -0.3 467,287 + +0.6 467,287 + -0.1 467,287 + +0.3 467,287 + -0.6 467,288 - -0.9 467,288 - -0.9 467,288 - -2.3 467,288 - -1.1 467,288 - -0.4 467,288 - +0.1 467,288 - -0.1 467,288 - -2.2 467,288 - -0.6 467,288 - -1.6 467,288 - -2.1 467,498 + -0.3 467,529 + -1.6 467,529 + -0.1 467,529 + -0.8 467,529 + -0.4 467,529 + -2.8 467,530 - +2.4 467,530 - -0.7 467,530 - -1.6 467,779 + -1.6 467,779 + +0.9 467,779 + -2.6 467,779 + +1.9 467,780 - +0.1 467,780 - -0.2 467,791 + +1.7 467,792 - +1.3 467,792 - +0.2 467,792 - -0.9 467,813 + -0.9 467,813 + -1.0 467,814 - AO353_02175 0.10 +0.2 467,814 - AO353_02175 0.10 -2.0 467,814 - AO353_02175 0.10 -1.0 467,814 - AO353_02175 0.10 -1.5 467,838 + AO353_02175 0.23 +0.5 467,839 - AO353_02175 0.24 -0.6 467,972 + -1.1 467,986 + +2.1 467,986 + -0.5 467,986 + +1.0 467,986 + -0.8 467,986 + +0.4 467,986 + +1.9 467,987 - +0.2 467,987 - -0.2 467,987 - +1.9 467,999 + -1.3 468,035 + +0.2 468,035 + +0.4 468,035 + -1.5 468,036 - -0.6 468,036 - -0.4 468,036 - +4.2 468,036 - +1.0 468,036 - +1.0 468,068 - -0.7 468,089 + -1.5 468,090 - -0.2 468,090 - -0.4 468,168 - AO353_02180 0.14 -0.7 468,168 - AO353_02180 0.14 -0.1 468,170 + AO353_02180 0.14 +0.1 468,171 - AO353_02180 0.15 +1.8 468,171 - AO353_02180 0.15 +1.1 468,255 + AO353_02180 0.40 +1.0 468,255 + AO353_02180 0.40 -2.1 468,255 + AO353_02180 0.40 +1.6 468,255 + AO353_02180 0.40 +1.1 468,255 + AO353_02180 0.40 +0.1 468,255 + AO353_02180 0.40 +1.5 468,256 - AO353_02180 0.40 -2.4 468,256 - AO353_02180 0.40 -2.6 468,256 - AO353_02180 0.40 +0.6 468,256 - AO353_02180 0.40 +1.2 468,256 - AO353_02180 0.40 +1.0 468,256 - AO353_02180 0.40 +0.4 468,256 - AO353_02180 0.40 +1.2 468,256 - AO353_02180 0.40 +0.9 468,256 - AO353_02180 0.40 +0.1 468,256 - AO353_02180 0.40 +1.2 468,256 - AO353_02180 0.40 -1.8 468,256 - AO353_02180 0.40 +2.2 468,256 - AO353_02180 0.40 +1.5 468,267 + AO353_02180 0.44 -0.3 468,268 - AO353_02180 0.44 +1.9 468,277 - AO353_02180 0.47 +0.1 468,277 - AO353_02180 0.47 -0.7 468,291 + AO353_02180 0.51 +1.5 468,291 + AO353_02180 0.51 +0.9 468,444 + -0.4 468,444 + +0.2 468,445 - +0.1 468,445 - +2.9 468,445 - -0.1
Or see this region's nucleotide sequence