Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01900 and AO353_01905 are separated by 132 nucleotides AO353_01905 and AO353_01910 are separated by 72 nucleotides AO353_01910 and AO353_01915 are separated by 103 nucleotides AO353_01915 and AO353_01920 are separated by 267 nucleotides
AO353_01900: AO353_01900 - hypothetical protein, at 401,498 to 402,412
_01900
AO353_01905: AO353_01905 - TetR family transcriptional regulator, at 402,545 to 403,150
_01905
AO353_01910: AO353_01910 - hypothetical protein, at 403,223 to 404,290
_01910
AO353_01915: AO353_01915 - GlcG protein, at 404,394 to 404,834
_01915
AO353_01920: AO353_01920 - glyoxylate carboligase, at 405,102 to 406,877
_01920
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 402.366 kb on - strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.432 kb on + strand at 402.432 kb on + strand at 402.432 kb on + strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.451 kb on - strand at 402.451 kb on - strand at 402.502 kb on + strand at 402.503 kb on - strand at 402.545 kb on - strand at 402.568 kb on + strand at 402.568 kb on + strand at 402.677 kb on + strand, within AO353_01905 at 402.677 kb on + strand, within AO353_01905 at 402.677 kb on + strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.801 kb on - strand, within AO353_01905 at 402.801 kb on - strand, within AO353_01905 at 403.028 kb on + strand, within AO353_01905 at 403.028 kb on + strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.091 kb on + strand at 403.092 kb on - strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.153 kb on - strand at 403.262 kb on + strand at 403.262 kb on + strand at 403.337 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.404 kb on + strand, within AO353_01910 at 403.404 kb on + strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.436 kb on - strand, within AO353_01910 at 403.482 kb on + strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.548 kb on + strand, within AO353_01910 at 403.548 kb on + strand, within AO353_01910 at 403.604 kb on + strand, within AO353_01910 at 403.605 kb on - strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.615 kb on - strand, within AO353_01910 at 403.722 kb on + strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.767 kb on - strand, within AO353_01910 at 403.767 kb on - strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.022 kb on - strand, within AO353_01910 at 404.037 kb on + strand, within AO353_01910 at 404.048 kb on + strand, within AO353_01910 at 404.049 kb on - strand, within AO353_01910 at 404.049 kb on - strand, within AO353_01910 at 404.138 kb on + strand, within AO353_01910 at 404.138 kb on + strand, within AO353_01910 at 404.139 kb on - strand, within AO353_01910 at 404.187 kb on - strand at 404.246 kb on + strand at 404.246 kb on + strand at 404.272 kb on + strand at 404.273 kb on - strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.335 kb on - strand at 404.385 kb on + strand at 404.386 kb on - strand at 404.386 kb on - strand at 404.585 kb on + strand, within AO353_01915 at 404.739 kb on + strand, within AO353_01915 at 404.740 kb on - strand, within AO353_01915 at 404.823 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.848 kb on - strand at 404.848 kb on - strand at 404.848 kb on - strand at 404.905 kb on - strand at 404.949 kb on - strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.976 kb on - strand at 404.976 kb on - strand at 404.976 kb on - strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.202 kb on - strand at 405.202 kb on - strand at 405.202 kb on - strand at 405.282 kb on + strand, within AO353_01920
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 402,366 - -1.3 402,430 + +0.2 402,430 + -0.8 402,430 + -0.2 402,430 + +2.8 402,430 + +0.5 402,431 - -1.1 402,431 - -0.4 402,431 - +0.4 402,431 - -0.9 402,431 - +0.1 402,431 - +2.0 402,431 - +0.4 402,432 + -1.4 402,432 + -2.1 402,432 + -0.4 402,433 - +0.1 402,433 - -0.8 402,433 - -0.2 402,433 - -1.3 402,433 - +1.6 402,434 + -0.1 402,434 + +0.1 402,434 + -0.4 402,434 + -0.9 402,434 + -0.9 402,434 + -2.1 402,434 + -1.3 402,434 + +0.6 402,434 + -1.0 402,434 + +0.7 402,434 + -1.4 402,434 + +1.9 402,434 + -1.4 402,434 + +3.2 402,434 + +1.0 402,434 + +1.1 402,435 - +0.4 402,435 - -0.2 402,435 - -1.5 402,435 - -1.1 402,435 - +0.8 402,435 - +0.5 402,435 - -1.3 402,435 - +3.4 402,435 - -0.1 402,435 - -0.1 402,435 - -1.4 402,435 - -0.6 402,435 - +0.2 402,435 - -1.4 402,435 - +0.8 402,435 - +2.2 402,435 - +0.5 402,435 - +1.6 402,435 - +0.7 402,451 - -0.8 402,451 - -0.7 402,502 + -0.3 402,503 - -0.4 402,545 - -1.0 402,568 + -3.1 402,568 + -0.6 402,677 + AO353_01905 0.22 -0.4 402,677 + AO353_01905 0.22 +1.9 402,677 + AO353_01905 0.22 -0.6 402,678 - AO353_01905 0.22 -0.5 402,678 - AO353_01905 0.22 +0.7 402,678 - AO353_01905 0.22 -2.0 402,678 - AO353_01905 0.22 +0.8 402,678 - AO353_01905 0.22 -0.2 402,680 + AO353_01905 0.22 -0.6 402,680 + AO353_01905 0.22 +0.8 402,680 + AO353_01905 0.22 +0.7 402,681 - AO353_01905 0.22 +0.1 402,681 - AO353_01905 0.22 -0.9 402,681 - AO353_01905 0.22 +1.6 402,683 + AO353_01905 0.23 +1.1 402,683 + AO353_01905 0.23 -0.4 402,683 + AO353_01905 0.23 -1.3 402,683 + AO353_01905 0.23 -0.4 402,683 + AO353_01905 0.23 -1.1 402,684 - AO353_01905 0.23 -0.2 402,684 - AO353_01905 0.23 -0.9 402,684 - AO353_01905 0.23 -0.1 402,684 - AO353_01905 0.23 +2.1 402,801 - AO353_01905 0.42 -0.8 402,801 - AO353_01905 0.42 +0.8 403,028 + AO353_01905 0.80 +0.7 403,028 + AO353_01905 0.80 -1.5 403,029 - AO353_01905 0.80 -0.2 403,029 - AO353_01905 0.80 +5.8 403,029 - AO353_01905 0.80 -0.4 403,091 + -0.6 403,092 - +0.1 403,152 + +2.1 403,152 + -0.7 403,152 + +3.0 403,152 + -1.7 403,153 - -1.1 403,262 + +0.3 403,262 + +0.8 403,337 - AO353_01910 0.11 +0.5 403,401 - AO353_01910 0.17 +1.1 403,401 - AO353_01910 0.17 -0.2 403,401 - AO353_01910 0.17 -1.2 403,404 + AO353_01910 0.17 +0.3 403,404 + AO353_01910 0.17 -2.0 403,405 - AO353_01910 0.17 -1.8 403,405 - AO353_01910 0.17 +0.2 403,405 - AO353_01910 0.17 -0.1 403,405 - AO353_01910 0.17 -0.7 403,436 - AO353_01910 0.20 +4.9 403,482 + AO353_01910 0.24 -1.1 403,483 - AO353_01910 0.24 -0.8 403,483 - AO353_01910 0.24 -0.8 403,483 - AO353_01910 0.24 +1.1 403,483 - AO353_01910 0.24 +0.8 403,483 - AO353_01910 0.24 -0.9 403,548 + AO353_01910 0.30 +9.2 403,548 + AO353_01910 0.30 +1.6 403,604 + AO353_01910 0.36 -0.6 403,605 - AO353_01910 0.36 -0.6 403,612 + AO353_01910 0.36 -2.2 403,612 + AO353_01910 0.36 -1.3 403,612 + AO353_01910 0.36 -0.8 403,612 + AO353_01910 0.36 -0.4 403,612 + AO353_01910 0.36 -0.4 403,612 + AO353_01910 0.36 -0.0 403,612 + AO353_01910 0.36 +0.7 403,613 - AO353_01910 0.37 +1.7 403,613 - AO353_01910 0.37 -1.1 403,613 - AO353_01910 0.37 -1.1 403,613 - AO353_01910 0.37 -0.2 403,613 - AO353_01910 0.37 -0.8 403,613 - AO353_01910 0.37 -1.4 403,613 - AO353_01910 0.37 +2.3 403,613 - AO353_01910 0.37 +2.4 403,613 - AO353_01910 0.37 -0.1 403,613 - AO353_01910 0.37 +1.2 403,613 - AO353_01910 0.37 +0.6 403,613 - AO353_01910 0.37 -1.8 403,615 - AO353_01910 0.37 -1.6 403,722 + AO353_01910 0.47 -1.5 403,723 - AO353_01910 0.47 +1.0 403,723 - AO353_01910 0.47 -0.2 403,723 - AO353_01910 0.47 -0.4 403,723 - AO353_01910 0.47 +0.8 403,723 - AO353_01910 0.47 +0.2 403,723 - AO353_01910 0.47 -0.8 403,767 - AO353_01910 0.51 +1.1 403,767 - AO353_01910 0.51 +0.6 403,801 + AO353_01910 0.54 -1.8 403,801 + AO353_01910 0.54 +0.4 403,801 + AO353_01910 0.54 +1.7 404,021 + AO353_01910 0.75 -1.3 404,021 + AO353_01910 0.75 +0.1 404,021 + AO353_01910 0.75 +1.2 404,022 - AO353_01910 0.75 -1.2 404,037 + AO353_01910 0.76 +4.5 404,048 + AO353_01910 0.77 +1.4 404,049 - AO353_01910 0.77 +1.8 404,049 - AO353_01910 0.77 -0.2 404,138 + AO353_01910 0.86 -1.4 404,138 + AO353_01910 0.86 -0.6 404,139 - AO353_01910 0.86 -0.8 404,187 - +1.1 404,246 + -1.1 404,246 + -1.7 404,272 + +0.6 404,273 - +1.4 404,332 + -2.5 404,332 + -0.9 404,332 + -0.4 404,332 + +1.2 404,332 + -1.3 404,332 + +0.1 404,332 + -1.7 404,333 - +0.8 404,333 - -2.8 404,333 - +0.9 404,333 - -1.1 404,333 - -0.3 404,333 - +0.8 404,333 - -0.4 404,333 - +0.5 404,333 - -0.9 404,333 - -0.6 404,333 - -2.1 404,333 - -1.3 404,334 + -1.6 404,334 + +3.6 404,334 + -0.8 404,334 + -0.2 404,334 + +1.8 404,335 - -0.1 404,385 + +1.0 404,386 - +0.2 404,386 - +0.3 404,585 + AO353_01915 0.43 +0.2 404,739 + AO353_01915 0.78 -0.2 404,740 - AO353_01915 0.78 +0.7 404,823 + -0.4 404,847 + +0.1 404,847 + -0.8 404,847 + -0.8 404,847 + -2.2 404,848 - +0.4 404,848 - -0.1 404,848 - -0.5 404,905 - +1.4 404,949 - -0.6 404,975 + -1.8 404,975 + +2.4 404,975 + +0.3 404,975 + -1.9 404,975 + -0.8 404,976 - -0.6 404,976 - +1.1 404,976 - -0.2 404,979 + -2.5 404,979 + -1.0 404,979 + -1.7 404,979 + -2.1 404,980 - +1.6 404,980 - -1.3 404,980 - +0.8 404,980 - +1.6 404,980 - -2.2 404,980 - -1.6 404,980 - +0.3 405,045 + -2.2 405,045 + +0.8 405,045 + -1.4 405,045 + -0.2 405,045 + +0.3 405,045 + -0.6 405,045 + +0.4 405,045 + -2.2 405,045 + +0.2 405,045 + -0.4 405,046 - +1.2 405,046 - +1.2 405,046 - +0.8 405,046 - +0.2 405,046 - -1.6 405,046 - +0.1 405,046 - +1.3 405,046 - -1.1 405,202 - -3.2 405,202 - +0.7 405,202 - -1.3 405,282 + AO353_01920 0.10 +1.2
Or see this region's nucleotide sequence