Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01845 and AO353_01850 are separated by 3 nucleotides AO353_01850 and AO353_01855 overlap by 7 nucleotides AO353_01855 and AO353_01860 are separated by 480 nucleotides
AO353_01845: AO353_01845 - succinate dehydrogenase, at 389,128 to 390,903
_01845
AO353_01850: AO353_01850 - succinate dehydrogenase, at 390,907 to 391,275
_01850
AO353_01855: AO353_01855 - succinate dehydrogenase, at 391,269 to 391,526
_01855
AO353_01860: AO353_01860 - type II citrate synthase, at 392,007 to 393,296
_01860
Position (kb) 390
391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 391.781 kb on - strand at 391.783 kb on - strand at 391.824 kb on - strand at 391.826 kb on + strand at 391.827 kb on - strand at 391.827 kb on - strand at 391.914 kb on - strand at 391.935 kb on + strand at 391.943 kb on + strand at 391.943 kb on + strand at 391.943 kb on + strand at 391.945 kb on + strand at 391.945 kb on + strand at 391.992 kb on + strand at 391.992 kb on + strand at 391.996 kb on + strand at 391.996 kb on + strand at 391.996 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 391,781 - -0.6 391,783 - -0.6 391,824 - +0.6 391,826 + +0.8 391,827 - -0.9 391,827 - -2.9 391,914 - -0.9 391,935 + +0.1 391,943 + -2.3 391,943 + -1.1 391,943 + -0.6 391,945 + -1.1 391,945 + +1.6 391,992 + -0.7 391,992 + -1.1 391,996 + +2.6 391,996 + +1.4 391,996 + -2.0
Or see this region's nucleotide sequence