Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00970 and AO353_00975 are separated by 472 nucleotides AO353_00975 and AO353_00980 are separated by 188 nucleotides AO353_00980 and AO353_00985 are separated by 116 nucleotides AO353_00985 and AO353_00990 are separated by 33 nucleotides
AO353_00970: AO353_00970 - group II intron reverse transcriptase/maturase, at 218,056 to 219,477
_00970
AO353_00975: AO353_00975 - hypothetical protein, at 219,950 to 220,141
_00975
AO353_00980: AO353_00980 - hypothetical protein, at 220,330 to 220,650
_00980
AO353_00985: AO353_00985 - hypothetical protein, at 220,767 to 220,961
_00985
AO353_00990: AO353_00990 - hypothetical protein, at 220,995 to 221,984
_00990
Position (kb) 219
220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 219.951 kb on + strand at 219.951 kb on + strand at 219.952 kb on - strand at 219.959 kb on + strand at 219.960 kb on - strand at 219.960 kb on - strand at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.128 kb on + strand at 220.128 kb on + strand at 220.128 kb on + strand at 220.128 kb on + strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.189 kb on + strand at 220.190 kb on - strand at 220.297 kb on + strand at 220.298 kb on - strand at 220.298 kb on - strand at 220.314 kb on + strand at 220.314 kb on + strand at 220.315 kb on - strand at 220.315 kb on - strand at 220.331 kb on + strand at 220.332 kb on - strand at 220.332 kb on - strand at 220.332 kb on - strand at 220.332 kb on - strand at 220.332 kb on - strand at 220.395 kb on + strand, within AO353_00980 at 220.395 kb on + strand, within AO353_00980 at 220.396 kb on - strand, within AO353_00980 at 220.396 kb on - strand, within AO353_00980 at 220.548 kb on + strand, within AO353_00980 at 220.548 kb on + strand, within AO353_00980 at 220.548 kb on + strand, within AO353_00980 at 220.549 kb on - strand, within AO353_00980 at 220.549 kb on - strand, within AO353_00980 at 220.601 kb on + strand, within AO353_00980 at 220.601 kb on + strand, within AO353_00980 at 220.601 kb on + strand, within AO353_00980 at 220.601 kb on + strand, within AO353_00980 at 220.601 kb on + strand, within AO353_00980 at 220.602 kb on - strand, within AO353_00980 at 220.602 kb on - strand, within AO353_00980 at 220.602 kb on - strand, within AO353_00980 at 220.602 kb on - strand, within AO353_00980 at 220.602 kb on - strand, within AO353_00980 at 220.642 kb on + strand at 220.643 kb on - strand at 220.643 kb on - strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.709 kb on + strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.710 kb on - strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.713 kb on + strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.714 kb on - strand at 220.716 kb on + strand at 220.716 kb on + strand at 220.716 kb on + strand at 220.717 kb on - strand at 220.717 kb on - strand at 220.717 kb on - strand at 220.717 kb on - strand at 220.717 kb on - strand at 220.723 kb on + strand at 220.723 kb on + strand at 220.723 kb on + strand at 220.723 kb on + strand at 220.724 kb on - strand at 220.724 kb on - strand at 220.724 kb on - strand at 220.766 kb on + strand at 220.766 kb on + strand at 220.766 kb on + strand at 220.766 kb on + strand at 220.767 kb on - strand at 220.767 kb on - strand at 220.767 kb on - strand at 220.767 kb on - strand at 220.767 kb on - strand at 220.767 kb on - strand at 220.767 kb on - strand at 220.767 kb on - strand at 220.767 kb on - strand at 220.767 kb on - strand at 220.788 kb on + strand, within AO353_00985 at 220.788 kb on + strand, within AO353_00985 at 220.788 kb on + strand, within AO353_00985 at 220.788 kb on + strand, within AO353_00985 at 220.788 kb on + strand, within AO353_00985 at 220.788 kb on + strand, within AO353_00985 at 220.788 kb on + strand, within AO353_00985 at 220.788 kb on + strand, within AO353_00985 at 220.788 kb on + strand, within AO353_00985 at 220.789 kb on - strand, within AO353_00985 at 220.789 kb on - strand, within AO353_00985 at 220.789 kb on - strand, within AO353_00985 at 220.789 kb on - strand, within AO353_00985 at 220.789 kb on - strand, within AO353_00985 at 220.792 kb on + strand, within AO353_00985 at 220.792 kb on + strand, within AO353_00985 at 220.792 kb on + strand, within AO353_00985 at 220.792 kb on + strand, within AO353_00985 at 220.792 kb on + strand, within AO353_00985 at 220.792 kb on + strand, within AO353_00985 at 220.792 kb on + strand, within AO353_00985 at 220.793 kb on - strand, within AO353_00985 at 220.793 kb on - strand, within AO353_00985 at 220.793 kb on - strand, within AO353_00985 at 220.793 kb on - strand, within AO353_00985 at 220.793 kb on - strand, within AO353_00985 at 220.793 kb on - strand, within AO353_00985 at 220.860 kb on + strand, within AO353_00985 at 220.860 kb on + strand, within AO353_00985 at 220.860 kb on + strand, within AO353_00985 at 220.860 kb on + strand, within AO353_00985 at 220.861 kb on - strand, within AO353_00985 at 220.861 kb on - strand, within AO353_00985 at 220.861 kb on - strand, within AO353_00985 at 220.929 kb on + strand, within AO353_00985 at 220.929 kb on + strand, within AO353_00985 at 220.929 kb on + strand, within AO353_00985 at 220.929 kb on + strand, within AO353_00985 at 220.929 kb on + strand, within AO353_00985 at 220.929 kb on + strand, within AO353_00985 at 220.929 kb on + strand, within AO353_00985 at 220.930 kb on - strand, within AO353_00985 at 220.930 kb on - strand, within AO353_00985 at 220.930 kb on - strand, within AO353_00985 at 220.930 kb on - strand, within AO353_00985 at 220.930 kb on - strand, within AO353_00985 at 220.930 kb on - strand, within AO353_00985 at 220.930 kb on - strand, within AO353_00985 at 220.982 kb on + strand at 220.982 kb on + strand at 220.983 kb on - strand at 221.028 kb on - strand at 221.028 kb on - strand at 221.075 kb on + strand at 221.076 kb on - strand at 221.076 kb on - strand at 221.139 kb on + strand, within AO353_00990 at 221.139 kb on + strand, within AO353_00990 at 221.140 kb on - strand, within AO353_00990 at 221.140 kb on - strand, within AO353_00990
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 219,951 + +0.4 219,951 + -0.2 219,952 - +0.7 219,959 + -0.8 219,960 - -0.8 219,960 - -1.2 220,065 + AO353_00975 0.60 -0.5 220,065 + AO353_00975 0.60 -0.1 220,065 + AO353_00975 0.60 -0.4 220,065 + AO353_00975 0.60 -2.8 220,065 + AO353_00975 0.60 -0.6 220,065 + AO353_00975 0.60 -0.4 220,065 + AO353_00975 0.60 -1.6 220,065 + AO353_00975 0.60 -2.9 220,128 + -0.2 220,128 + +0.4 220,128 + +0.2 220,128 + +0.8 220,129 - +0.0 220,129 - +0.1 220,129 - -1.7 220,129 - -0.7 220,129 - -0.5 220,129 - -0.4 220,129 - +1.8 220,143 + -0.1 220,143 + -2.4 220,143 + -1.0 220,143 + +0.4 220,143 + -2.7 220,143 + -0.4 220,143 + -2.2 220,143 + -1.4 220,144 - +1.1 220,144 - -0.2 220,144 - -1.0 220,144 - +0.5 220,144 - -1.0 220,144 - -0.5 220,144 - +0.5 220,144 - -1.0 220,144 - +1.0 220,189 + -0.4 220,190 - +1.2 220,297 + -2.2 220,298 - +2.0 220,298 - +1.9 220,314 + +1.4 220,314 + -1.0 220,315 - -0.6 220,315 - -0.8 220,331 + -0.4 220,332 - -0.3 220,332 - -0.4 220,332 - +1.8 220,332 - -1.5 220,332 - +1.4 220,395 + AO353_00980 0.20 -0.5 220,395 + AO353_00980 0.20 -1.9 220,396 - AO353_00980 0.21 +0.6 220,396 - AO353_00980 0.21 +0.5 220,548 + AO353_00980 0.68 -0.4 220,548 + AO353_00980 0.68 -1.3 220,548 + AO353_00980 0.68 +1.0 220,549 - AO353_00980 0.68 -0.4 220,549 - AO353_00980 0.68 +0.4 220,601 + AO353_00980 0.84 +2.0 220,601 + AO353_00980 0.84 +0.6 220,601 + AO353_00980 0.84 +0.7 220,601 + AO353_00980 0.84 +0.1 220,601 + AO353_00980 0.84 +2.7 220,602 - AO353_00980 0.85 -0.7 220,602 - AO353_00980 0.85 -0.3 220,602 - AO353_00980 0.85 +0.5 220,602 - AO353_00980 0.85 -0.1 220,602 - AO353_00980 0.85 -1.5 220,642 + +0.4 220,643 - +0.2 220,643 - -0.0 220,709 + -1.3 220,709 + +0.4 220,709 + -0.5 220,709 + -0.2 220,709 + +0.4 220,709 + +0.9 220,709 + +3.0 220,709 + +1.7 220,709 + -0.2 220,709 + -1.0 220,709 + +0.9 220,709 + -1.3 220,709 + -0.4 220,709 + +0.1 220,709 + -0.1 220,709 + +1.6 220,709 + +0.6 220,709 + -2.3 220,709 + -0.2 220,709 + +0.0 220,709 + -2.4 220,709 + +1.8 220,709 + -1.4 220,709 + +0.2 220,709 + +2.4 220,709 + -1.6 220,709 + -1.2 220,709 + +2.3 220,709 + -0.8 220,709 + +4.4 220,709 + +1.7 220,709 + -1.5 220,709 + -1.0 220,709 + +0.9 220,709 + +0.6 220,709 + +0.4 220,709 + -0.6 220,710 - +0.6 220,710 - +2.8 220,710 - +0.9 220,710 - -2.3 220,710 - +0.2 220,710 - -0.4 220,710 - +0.4 220,710 - +1.1 220,710 - -0.2 220,710 - -1.1 220,710 - +2.1 220,710 - +1.0 220,710 - -0.1 220,710 - -1.5 220,710 - +0.5 220,710 - +1.1 220,710 - +1.4 220,710 - +2.2 220,710 - +2.4 220,710 - -2.0 220,710 - +0.2 220,710 - +0.6 220,710 - +2.7 220,710 - +0.9 220,710 - +0.2 220,710 - +0.8 220,710 - +0.1 220,710 - -1.7 220,710 - -0.4 220,710 - -1.6 220,710 - -0.3 220,710 - -2.2 220,710 - +1.5 220,710 - +3.9 220,710 - -1.2 220,710 - -0.2 220,710 - -0.4 220,710 - +1.4 220,710 - +0.9 220,713 + +0.0 220,713 + +0.5 220,713 + +0.7 220,713 + -0.2 220,713 + -0.3 220,713 + -1.2 220,713 + +2.6 220,713 + +2.1 220,713 + -0.0 220,713 + -1.1 220,713 + -0.0 220,713 + +0.2 220,713 + -0.3 220,713 + -1.5 220,713 + -1.2 220,713 + +1.5 220,713 + -1.8 220,713 + -0.5 220,713 + -1.4 220,713 + -0.8 220,713 + -1.3 220,713 + -0.6 220,713 + -0.7 220,713 + -0.6 220,713 + +0.1 220,713 + -0.9 220,714 - -1.8 220,714 - -0.1 220,714 - -0.4 220,714 - +1.8 220,714 - +1.3 220,714 - +0.8 220,714 - +1.6 220,714 - +0.0 220,714 - +2.7 220,714 - +0.7 220,714 - -1.6 220,714 - -1.7 220,714 - -0.8 220,714 - +0.0 220,714 - -0.4 220,714 - -0.8 220,714 - -1.1 220,714 - -0.6 220,714 - +1.1 220,714 - -2.0 220,714 - -1.6 220,714 - +0.3 220,714 - -1.9 220,714 - -1.0 220,714 - -2.0 220,714 - +0.5 220,714 - +0.9 220,714 - +0.3 220,714 - -1.4 220,716 + +0.8 220,716 + +1.1 220,716 + +1.2 220,717 - +0.3 220,717 - +0.9 220,717 - -0.2 220,717 - +1.9 220,717 - +0.4 220,723 + -0.3 220,723 + +1.6 220,723 + +0.7 220,723 + +0.8 220,724 - -0.3 220,724 - +0.3 220,724 - +0.4 220,766 + +0.6 220,766 + -1.2 220,766 + -1.5 220,766 + +0.2 220,767 - +1.6 220,767 - +2.0 220,767 - +1.4 220,767 - -1.0 220,767 - -1.7 220,767 - +1.4 220,767 - -0.6 220,767 - +1.2 220,767 - +1.1 220,767 - +0.8 220,788 + AO353_00985 0.11 -0.3 220,788 + AO353_00985 0.11 +0.9 220,788 + AO353_00985 0.11 +0.8 220,788 + AO353_00985 0.11 +3.6 220,788 + AO353_00985 0.11 -2.8 220,788 + AO353_00985 0.11 -1.3 220,788 + AO353_00985 0.11 +0.0 220,788 + AO353_00985 0.11 -1.6 220,788 + AO353_00985 0.11 -0.6 220,789 - AO353_00985 0.11 -1.0 220,789 - AO353_00985 0.11 +0.7 220,789 - AO353_00985 0.11 -1.3 220,789 - AO353_00985 0.11 +0.2 220,789 - AO353_00985 0.11 +1.6 220,792 + AO353_00985 0.13 -0.1 220,792 + AO353_00985 0.13 +0.6 220,792 + AO353_00985 0.13 -1.1 220,792 + AO353_00985 0.13 -0.9 220,792 + AO353_00985 0.13 +0.2 220,792 + AO353_00985 0.13 -2.9 220,792 + AO353_00985 0.13 -0.5 220,793 - AO353_00985 0.13 +0.6 220,793 - AO353_00985 0.13 -0.5 220,793 - AO353_00985 0.13 +0.9 220,793 - AO353_00985 0.13 +1.6 220,793 - AO353_00985 0.13 +0.8 220,793 - AO353_00985 0.13 -1.4 220,860 + AO353_00985 0.48 -1.1 220,860 + AO353_00985 0.48 -2.0 220,860 + AO353_00985 0.48 -0.7 220,860 + AO353_00985 0.48 -0.4 220,861 - AO353_00985 0.48 -1.2 220,861 - AO353_00985 0.48 +1.1 220,861 - AO353_00985 0.48 +1.1 220,929 + AO353_00985 0.83 +0.9 220,929 + AO353_00985 0.83 +0.4 220,929 + AO353_00985 0.83 +2.0 220,929 + AO353_00985 0.83 -1.2 220,929 + AO353_00985 0.83 +1.0 220,929 + AO353_00985 0.83 -0.6 220,929 + AO353_00985 0.83 -0.3 220,930 - AO353_00985 0.84 -0.8 220,930 - AO353_00985 0.84 +1.8 220,930 - AO353_00985 0.84 +0.6 220,930 - AO353_00985 0.84 +2.6 220,930 - AO353_00985 0.84 -1.0 220,930 - AO353_00985 0.84 -1.4 220,930 - AO353_00985 0.84 +0.2 220,982 + -0.2 220,982 + +2.2 220,983 - +1.3 221,028 - -1.1 221,028 - -1.5 221,075 + +0.4 221,076 - -2.0 221,076 - +0.2 221,139 + AO353_00990 0.15 +0.8 221,139 + AO353_00990 0.15 -0.4 221,140 - AO353_00990 0.15 +0.8 221,140 - AO353_00990 0.15 +0.7
Or see this region's nucleotide sequence