Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS10150

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS10140 and ABIE51_RS10145 are separated by 40 nucleotidesABIE51_RS10145 and ABIE51_RS10150 are separated by 4 nucleotidesABIE51_RS10150 and ABIE51_RS10155 are separated by 338 nucleotides ABIE51_RS10140: ABIE51_RS10140 - sugar MFS transporter, at 2,184,816 to 2,186,120 _RS10140 ABIE51_RS10145: ABIE51_RS10145 - polysaccharide deacetylase family protein, at 2,186,161 to 2,186,985 _RS10145 ABIE51_RS10150: ABIE51_RS10150 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 2,186,990 to 2,189,494 _RS10150 ABIE51_RS10155: ABIE51_RS10155 - LacI family DNA-binding transcriptional regulator, at 2,189,833 to 2,190,840 _RS10155 Position (kb) 2186 2187 2188 2189 2190Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2186.198 kb on + strandat 2186.198 kb on + strandat 2186.198 kb on + strandat 2186.198 kb on + strandat 2186.199 kb on - strandat 2186.199 kb on - strandat 2186.199 kb on - strandat 2186.199 kb on - strandat 2186.199 kb on - strandat 2186.220 kb on + strandat 2186.220 kb on + strandat 2186.221 kb on - strandat 2186.232 kb on - strandat 2186.298 kb on - strand, within ABIE51_RS10145at 2186.298 kb on - strand, within ABIE51_RS10145at 2186.501 kb on + strand, within ABIE51_RS10145at 2186.786 kb on + strand, within ABIE51_RS10145at 2186.787 kb on - strand, within ABIE51_RS10145at 2186.862 kb on - strand, within ABIE51_RS10145at 2186.862 kb on - strand, within ABIE51_RS10145at 2186.862 kb on - strand, within ABIE51_RS10145at 2186.992 kb on - strandat 2186.992 kb on - strandat 2187.508 kb on - strand, within ABIE51_RS10150at 2187.508 kb on - strand, within ABIE51_RS10150at 2187.988 kb on - strand, within ABIE51_RS10150at 2188.122 kb on + strand, within ABIE51_RS10150at 2188.822 kb on - strand, within ABIE51_RS10150at 2188.822 kb on - strand, within ABIE51_RS10150at 2188.822 kb on - strand, within ABIE51_RS10150at 2188.822 kb on - strand, within ABIE51_RS10150at 2188.884 kb on + strand, within ABIE51_RS10150at 2188.884 kb on + strand, within ABIE51_RS10150at 2188.885 kb on - strand, within ABIE51_RS10150at 2188.885 kb on - strand, within ABIE51_RS10150at 2188.885 kb on - strand, within ABIE51_RS10150at 2188.885 kb on - strand, within ABIE51_RS10150at 2188.885 kb on - strand, within ABIE51_RS10150at 2188.935 kb on + strand, within ABIE51_RS10150at 2188.936 kb on - strand, within ABIE51_RS10150at 2188.936 kb on - strand, within ABIE51_RS10150at 2189.614 kb on + strandat 2189.614 kb on + strandat 2189.968 kb on + strand, within ABIE51_RS10155at 2189.968 kb on + strand, within ABIE51_RS10155at 2189.968 kb on + strand, within ABIE51_RS10155at 2189.969 kb on - strand, within ABIE51_RS10155at 2190.031 kb on + strand, within ABIE51_RS10155at 2190.031 kb on + strand, within ABIE51_RS10155at 2190.032 kb on - strand, within ABIE51_RS10155at 2190.032 kb on - strand, within ABIE51_RS10155at 2190.052 kb on + strand, within ABIE51_RS10155at 2190.052 kb on + strand, within ABIE51_RS10155at 2190.052 kb on + strand, within ABIE51_RS10155at 2190.103 kb on + strand, within ABIE51_RS10155at 2190.103 kb on + strand, within ABIE51_RS10155at 2190.103 kb on + strand, within ABIE51_RS10155at 2190.103 kb on + strand, within ABIE51_RS10155at 2190.103 kb on + strand, within ABIE51_RS10155at 2190.104 kb on - strand, within ABIE51_RS10155at 2190.104 kb on - strand, within ABIE51_RS10155

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,186,198 + -4.4
2,186,198 + -3.1
2,186,198 + +0.2
2,186,198 + -1.4
2,186,199 - -2.0
2,186,199 - -3.7
2,186,199 - -0.2
2,186,199 - -0.2
2,186,199 - -3.6
2,186,220 + -1.2
2,186,220 + -1.8
2,186,221 - -0.8
2,186,232 - -1.8
2,186,298 - ABIE51_RS10145 0.17 -2.6
2,186,298 - ABIE51_RS10145 0.17 -3.0
2,186,501 + ABIE51_RS10145 0.41 -0.6
2,186,786 + ABIE51_RS10145 0.76 -0.0
2,186,787 - ABIE51_RS10145 0.76 +0.1
2,186,862 - ABIE51_RS10145 0.85 -2.5
2,186,862 - ABIE51_RS10145 0.85 -2.3
2,186,862 - ABIE51_RS10145 0.85 -3.4
2,186,992 - -1.6
2,186,992 - -1.8
2,187,508 - ABIE51_RS10150 0.21 -3.2
2,187,508 - ABIE51_RS10150 0.21 -2.6
2,187,988 - ABIE51_RS10150 0.40 -2.0
2,188,122 + ABIE51_RS10150 0.45 +0.3
2,188,822 - ABIE51_RS10150 0.73 -0.9
2,188,822 - ABIE51_RS10150 0.73 -0.6
2,188,822 - ABIE51_RS10150 0.73 -0.1
2,188,822 - ABIE51_RS10150 0.73 -1.4
2,188,884 + ABIE51_RS10150 0.76 -1.0
2,188,884 + ABIE51_RS10150 0.76 -0.4
2,188,885 - ABIE51_RS10150 0.76 +1.6
2,188,885 - ABIE51_RS10150 0.76 +0.8
2,188,885 - ABIE51_RS10150 0.76 -2.1
2,188,885 - ABIE51_RS10150 0.76 -0.6
2,188,885 - ABIE51_RS10150 0.76 -1.3
2,188,935 + ABIE51_RS10150 0.78 +0.6
2,188,936 - ABIE51_RS10150 0.78 -1.8
2,188,936 - ABIE51_RS10150 0.78 +1.2
2,189,614 + -2.1
2,189,614 + -0.5
2,189,968 + ABIE51_RS10155 0.13 -0.2
2,189,968 + ABIE51_RS10155 0.13 +0.1
2,189,968 + ABIE51_RS10155 0.13 -1.0
2,189,969 - ABIE51_RS10155 0.13 -1.1
2,190,031 + ABIE51_RS10155 0.20 +0.4
2,190,031 + ABIE51_RS10155 0.20 -1.1
2,190,032 - ABIE51_RS10155 0.20 -0.2
2,190,032 - ABIE51_RS10155 0.20 -0.8
2,190,052 + ABIE51_RS10155 0.22 +1.7
2,190,052 + ABIE51_RS10155 0.22 +1.8
2,190,052 + ABIE51_RS10155 0.22 -0.4
2,190,103 + ABIE51_RS10155 0.27 -1.1
2,190,103 + ABIE51_RS10155 0.27 -0.2
2,190,103 + ABIE51_RS10155 0.27 -1.5
2,190,103 + ABIE51_RS10155 0.27 -2.5
2,190,103 + ABIE51_RS10155 0.27 -1.4
2,190,104 - ABIE51_RS10155 0.27 -0.9
2,190,104 - ABIE51_RS10155 0.27 -1.3

Or see this region's nucleotide sequence