Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS10140 and ABIE51_RS10145 are separated by 40 nucleotides ABIE51_RS10145 and ABIE51_RS10150 are separated by 4 nucleotides ABIE51_RS10150 and ABIE51_RS10155 are separated by 338 nucleotides
ABIE51_RS10140: ABIE51_RS10140 - sugar MFS transporter, at 2,184,816 to 2,186,120
_RS10140
ABIE51_RS10145: ABIE51_RS10145 - polysaccharide deacetylase family protein, at 2,186,161 to 2,186,985
_RS10145
ABIE51_RS10150: ABIE51_RS10150 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 2,186,990 to 2,189,494
_RS10150
ABIE51_RS10155: ABIE51_RS10155 - LacI family DNA-binding transcriptional regulator, at 2,189,833 to 2,190,840
_RS10155
Position (kb)
2186
2187
2188
2189
2190 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2186.198 kb on + strand at 2186.198 kb on + strand at 2186.198 kb on + strand at 2186.198 kb on + strand at 2186.199 kb on - strand at 2186.199 kb on - strand at 2186.199 kb on - strand at 2186.199 kb on - strand at 2186.199 kb on - strand at 2186.220 kb on + strand at 2186.220 kb on + strand at 2186.221 kb on - strand at 2186.232 kb on - strand at 2186.298 kb on - strand, within ABIE51_RS10145 at 2186.298 kb on - strand, within ABIE51_RS10145 at 2186.501 kb on + strand, within ABIE51_RS10145 at 2186.786 kb on + strand, within ABIE51_RS10145 at 2186.787 kb on - strand, within ABIE51_RS10145 at 2186.862 kb on - strand, within ABIE51_RS10145 at 2186.862 kb on - strand, within ABIE51_RS10145 at 2186.862 kb on - strand, within ABIE51_RS10145 at 2186.992 kb on - strand at 2186.992 kb on - strand at 2187.508 kb on - strand, within ABIE51_RS10150 at 2187.508 kb on - strand, within ABIE51_RS10150 at 2187.988 kb on - strand, within ABIE51_RS10150 at 2188.122 kb on + strand, within ABIE51_RS10150 at 2188.822 kb on - strand, within ABIE51_RS10150 at 2188.822 kb on - strand, within ABIE51_RS10150 at 2188.822 kb on - strand, within ABIE51_RS10150 at 2188.822 kb on - strand, within ABIE51_RS10150 at 2188.884 kb on + strand, within ABIE51_RS10150 at 2188.884 kb on + strand, within ABIE51_RS10150 at 2188.885 kb on - strand, within ABIE51_RS10150 at 2188.885 kb on - strand, within ABIE51_RS10150 at 2188.885 kb on - strand, within ABIE51_RS10150 at 2188.885 kb on - strand, within ABIE51_RS10150 at 2188.885 kb on - strand, within ABIE51_RS10150 at 2188.935 kb on + strand, within ABIE51_RS10150 at 2188.936 kb on - strand, within ABIE51_RS10150 at 2188.936 kb on - strand, within ABIE51_RS10150 at 2189.614 kb on + strand at 2189.614 kb on + strand at 2189.968 kb on + strand, within ABIE51_RS10155 at 2189.968 kb on + strand, within ABIE51_RS10155 at 2189.968 kb on + strand, within ABIE51_RS10155 at 2189.969 kb on - strand, within ABIE51_RS10155 at 2190.031 kb on + strand, within ABIE51_RS10155 at 2190.031 kb on + strand, within ABIE51_RS10155 at 2190.032 kb on - strand, within ABIE51_RS10155 at 2190.032 kb on - strand, within ABIE51_RS10155 at 2190.052 kb on + strand, within ABIE51_RS10155 at 2190.052 kb on + strand, within ABIE51_RS10155 at 2190.052 kb on + strand, within ABIE51_RS10155 at 2190.103 kb on + strand, within ABIE51_RS10155 at 2190.103 kb on + strand, within ABIE51_RS10155 at 2190.103 kb on + strand, within ABIE51_RS10155 at 2190.103 kb on + strand, within ABIE51_RS10155 at 2190.103 kb on + strand, within ABIE51_RS10155 at 2190.104 kb on - strand, within ABIE51_RS10155 at 2190.104 kb on - strand, within ABIE51_RS10155
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,186,198 + -4.4 2,186,198 + -3.1 2,186,198 + +0.2 2,186,198 + -1.4 2,186,199 - -2.0 2,186,199 - -3.7 2,186,199 - -0.2 2,186,199 - -0.2 2,186,199 - -3.6 2,186,220 + -1.2 2,186,220 + -1.8 2,186,221 - -0.8 2,186,232 - -1.8 2,186,298 - ABIE51_RS10145 0.17 -2.6 2,186,298 - ABIE51_RS10145 0.17 -3.0 2,186,501 + ABIE51_RS10145 0.41 -0.6 2,186,786 + ABIE51_RS10145 0.76 -0.0 2,186,787 - ABIE51_RS10145 0.76 +0.1 2,186,862 - ABIE51_RS10145 0.85 -2.5 2,186,862 - ABIE51_RS10145 0.85 -2.3 2,186,862 - ABIE51_RS10145 0.85 -3.4 2,186,992 - -1.6 2,186,992 - -1.8 2,187,508 - ABIE51_RS10150 0.21 -3.2 2,187,508 - ABIE51_RS10150 0.21 -2.6 2,187,988 - ABIE51_RS10150 0.40 -2.0 2,188,122 + ABIE51_RS10150 0.45 +0.3 2,188,822 - ABIE51_RS10150 0.73 -0.9 2,188,822 - ABIE51_RS10150 0.73 -0.6 2,188,822 - ABIE51_RS10150 0.73 -0.1 2,188,822 - ABIE51_RS10150 0.73 -1.4 2,188,884 + ABIE51_RS10150 0.76 -1.0 2,188,884 + ABIE51_RS10150 0.76 -0.4 2,188,885 - ABIE51_RS10150 0.76 +1.6 2,188,885 - ABIE51_RS10150 0.76 +0.8 2,188,885 - ABIE51_RS10150 0.76 -2.1 2,188,885 - ABIE51_RS10150 0.76 -0.6 2,188,885 - ABIE51_RS10150 0.76 -1.3 2,188,935 + ABIE51_RS10150 0.78 +0.6 2,188,936 - ABIE51_RS10150 0.78 -1.8 2,188,936 - ABIE51_RS10150 0.78 +1.2 2,189,614 + -2.1 2,189,614 + -0.5 2,189,968 + ABIE51_RS10155 0.13 -0.2 2,189,968 + ABIE51_RS10155 0.13 +0.1 2,189,968 + ABIE51_RS10155 0.13 -1.0 2,189,969 - ABIE51_RS10155 0.13 -1.1 2,190,031 + ABIE51_RS10155 0.20 +0.4 2,190,031 + ABIE51_RS10155 0.20 -1.1 2,190,032 - ABIE51_RS10155 0.20 -0.2 2,190,032 - ABIE51_RS10155 0.20 -0.8 2,190,052 + ABIE51_RS10155 0.22 +1.7 2,190,052 + ABIE51_RS10155 0.22 +1.8 2,190,052 + ABIE51_RS10155 0.22 -0.4 2,190,103 + ABIE51_RS10155 0.27 -1.1 2,190,103 + ABIE51_RS10155 0.27 -0.2 2,190,103 + ABIE51_RS10155 0.27 -1.5 2,190,103 + ABIE51_RS10155 0.27 -2.5 2,190,103 + ABIE51_RS10155 0.27 -1.4 2,190,104 - ABIE51_RS10155 0.27 -0.9 2,190,104 - ABIE51_RS10155 0.27 -1.3
Or see this region's nucleotide sequence