Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06460

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS06450 and ABIE51_RS06455 overlap by 4 nucleotidesABIE51_RS06455 and ABIE51_RS06460 overlap by 4 nucleotidesABIE51_RS06460 and ABIE51_RS06465 overlap by 4 nucleotidesABIE51_RS06465 and ABIE51_RS06470 overlap by 4 nucleotides ABIE51_RS06450: ABIE51_RS06450 - cell division protein FtsB, at 1,378,818 to 1,379,162 _RS06450 ABIE51_RS06455: ABIE51_RS06455 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,379,159 to 1,379,872 _RS06455 ABIE51_RS06460: ABIE51_RS06460 - hypothetical protein, at 1,379,869 to 1,380,315 _RS06460 ABIE51_RS06465: ABIE51_RS06465 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,380,312 to 1,380,791 _RS06465 ABIE51_RS06470: ABIE51_RS06470 - tRNA pseudouridine(13) synthase TruD, at 1,380,788 to 1,381,840 _RS06470 Position (kb) 1379 1380 1381Strain fitness (log2 ratio) -2 -1 0 1at 1379.917 kb on - strand, within ABIE51_RS06460at 1381.007 kb on + strand, within ABIE51_RS06470at 1381.008 kb on - strand, within ABIE51_RS06470at 1381.274 kb on + strand, within ABIE51_RS06470at 1381.275 kb on - strand, within ABIE51_RS06470at 1381.275 kb on - strand, within ABIE51_RS06470at 1381.275 kb on - strand, within ABIE51_RS06470at 1381.275 kb on - strand, within ABIE51_RS06470

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
1,379,917 - ABIE51_RS06460 0.11 +0.8
1,381,007 + ABIE51_RS06470 0.21 -0.7
1,381,008 - ABIE51_RS06470 0.21 -2.7
1,381,274 + ABIE51_RS06470 0.46 -0.8
1,381,275 - ABIE51_RS06470 0.46 +1.2
1,381,275 - ABIE51_RS06470 0.46 +1.1
1,381,275 - ABIE51_RS06470 0.46 -1.0
1,381,275 - ABIE51_RS06470 0.46 -0.1

Or see this region's nucleotide sequence