Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08605

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08595 and MMP_RS08600 overlap by 11 nucleotidesMMP_RS08600 and MMP_RS08605 are separated by 27 nucleotidesMMP_RS08605 and MMP_RS08610 overlap by 11 nucleotidesMMP_RS08610 and MMP_RS08615 are separated by 40 nucleotidesMMP_RS08615 and MMP_RS08620 are separated by 15 nucleotides MMP_RS08595: MMP_RS08595 - flagellar protein C, at 1,611,962 to 1,612,522 _RS08595 MMP_RS08600: MMP_RS08600 - flagellar protein D, at 1,612,512 to 1,613,480 _RS08600 MMP_RS08605: MMP_RS08605 - flagellar protein E, at 1,613,508 to 1,613,915 _RS08605 MMP_RS08610: MMP_RS08610 - flagellar protein F, at 1,613,905 to 1,614,312 _RS08610 MMP_RS08615: MMP_RS08615 - flagellar protein G, at 1,614,353 to 1,614,805 _RS08615 MMP_RS08620: MMP_RS08620 - flagellar accessory protein FlaH, at 1,614,821 to 1,615,513 _RS08620 Position (kb) 1613 1614Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1612.854 kb on - strand, within MMP_RS08600at 1612.855 kb on + strand, within MMP_RS08600at 1613.230 kb on + strand, within MMP_RS08600at 1613.362 kb on - strand, within MMP_RS08600at 1613.438 kb on + strandat 1613.447 kb on + strandat 1613.492 kb on + strandat 1613.607 kb on + strand, within MMP_RS08605at 1613.620 kb on + strand, within MMP_RS08605at 1613.713 kb on - strand, within MMP_RS08605at 1613.714 kb on + strand, within MMP_RS08605at 1613.806 kb on - strand, within MMP_RS08605at 1613.807 kb on + strand, within MMP_RS08605at 1613.821 kb on - strand, within MMP_RS08605at 1613.828 kb on - strand, within MMP_RS08605at 1613.957 kb on - strand, within MMP_RS08610at 1613.958 kb on + strand, within MMP_RS08610at 1613.968 kb on - strand, within MMP_RS08610at 1613.969 kb on + strand, within MMP_RS08610at 1613.969 kb on + strand, within MMP_RS08610at 1613.974 kb on - strand, within MMP_RS08610at 1613.974 kb on - strand, within MMP_RS08610at 1613.974 kb on - strand, within MMP_RS08610at 1613.975 kb on + strand, within MMP_RS08610at 1614.006 kb on + strand, within MMP_RS08610at 1614.050 kb on - strand, within MMP_RS08610at 1614.051 kb on + strand, within MMP_RS08610at 1614.072 kb on + strand, within MMP_RS08610at 1614.096 kb on - strand, within MMP_RS08610at 1614.113 kb on - strand, within MMP_RS08610at 1614.114 kb on + strand, within MMP_RS08610at 1614.161 kb on + strand, within MMP_RS08610at 1614.296 kb on + strandat 1614.298 kb on - strandat 1614.299 kb on + strandat 1614.351 kb on + strandat 1614.381 kb on - strandat 1614.618 kb on - strand, within MMP_RS08615at 1614.759 kb on - strand, within MMP_RS08615at 1614.786 kb on - strandat 1614.803 kb on - strandat 1614.804 kb on + strandat 1614.804 kb on + strandat 1614.807 kb on - strandat 1614.808 kb on + strandat 1614.838 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
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1,612,854 - MMP_RS08600 0.35 -5.2
1,612,855 + MMP_RS08600 0.35 -4.1
1,613,230 + MMP_RS08600 0.74 -4.3
1,613,362 - MMP_RS08600 0.88 -5.0
1,613,438 + -5.6
1,613,447 + -5.5
1,613,492 + -4.6
1,613,607 + MMP_RS08605 0.24 -5.8
1,613,620 + MMP_RS08605 0.27 -4.2
1,613,713 - MMP_RS08605 0.50 -5.6
1,613,714 + MMP_RS08605 0.50 -6.3
1,613,806 - MMP_RS08605 0.73 -4.4
1,613,807 + MMP_RS08605 0.73 -5.8
1,613,821 - MMP_RS08605 0.77 -5.9
1,613,828 - MMP_RS08605 0.78 -4.3
1,613,957 - MMP_RS08610 0.13 +0.8
1,613,958 + MMP_RS08610 0.13 -0.1
1,613,968 - MMP_RS08610 0.15 +0.5
1,613,969 + MMP_RS08610 0.16 -0.1
1,613,969 + MMP_RS08610 0.16 -0.6
1,613,974 - MMP_RS08610 0.17 +0.7
1,613,974 - MMP_RS08610 0.17 +0.9
1,613,974 - MMP_RS08610 0.17 +0.3
1,613,975 + MMP_RS08610 0.17 -0.3
1,614,006 + MMP_RS08610 0.25 +0.7
1,614,050 - MMP_RS08610 0.36 +0.7
1,614,051 + MMP_RS08610 0.36 +0.4
1,614,072 + MMP_RS08610 0.41 +0.2
1,614,096 - MMP_RS08610 0.47 +0.7
1,614,113 - MMP_RS08610 0.51 +0.9
1,614,114 + MMP_RS08610 0.51 +0.6
1,614,161 + MMP_RS08610 0.63 +0.7
1,614,296 + +1.0
1,614,298 - +1.3
1,614,299 + +1.0
1,614,351 + +1.0
1,614,381 - +0.6
1,614,618 - MMP_RS08615 0.58 +0.3
1,614,759 - MMP_RS08615 0.90 +0.8
1,614,786 - +0.8
1,614,803 - +1.0
1,614,804 + +0.9
1,614,804 + +0.9
1,614,807 - +1.2
1,614,808 + +0.6
1,614,838 + +0.6

Or see this region's nucleotide sequence