Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08005 and MMP_RS08010 are separated by 11 nucleotides MMP_RS08010 and MMP_RS08015 are separated by 8 nucleotides MMP_RS08015 and MMP_RS08020 are separated by 9 nucleotides MMP_RS08020 and MMP_RS08025 are separated by 47 nucleotides
MMP_RS08005: MMP_RS08005 - coenzyme-B sulfoethylthiotransferase subunit beta, at 1,509,697 to 1,511,028
_RS08005
MMP_RS08010: MMP_RS08010 - methyl-coenzyme M reductase operon protein D, at 1,511,040 to 1,511,519
_RS08010
MMP_RS08015: MMP_RS08015 - methyl-coenzyme M reductase I operon protein C, at 1,511,528 to 1,512,124
_RS08015
MMP_RS08020: MMP_RS08020 - coenzyme-B sulfoethylthiotransferase subunit gamma, at 1,512,134 to 1,512,916
_RS08020
MMP_RS08025: MMP_RS08025 - coenzyme-B sulfoethylthiotransferase subunit alpha, at 1,512,964 to 1,514,625
_RS08025
Position (kb) 1511
1512
1513 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1511.447 kb on + strand at 1511.836 kb on - strand at 1511.853 kb on - strand at 1512.118 kb on + strand at 1512.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations remove 1,511,447 + -3.3 1,511,836 - -3.5 1,511,853 - -3.6 1,512,118 + -3.2 1,512,881 - -2.3
Or see this region's nucleotide sequence