Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04745 and MMP_RS04750 are separated by 84 nucleotides MMP_RS04750 and MMP_RS04755 overlap by 4 nucleotides MMP_RS04755 and MMP_RS04760 are separated by 63 nucleotides MMP_RS04760 and MMP_RS04765 are separated by 45 nucleotides
MMP_RS04745: MMP_RS04745 - proteasome assembly chaperone family protein, at 904,188 to 904,895
_RS04745
MMP_RS04750: MMP_RS04750 - TIGR00454 family protein, at 904,980 to 905,588
_RS04750
MMP_RS04755: MMP_RS04755 - PRC-barrel domain-containing protein, at 905,585 to 905,833
_RS04755
MMP_RS04760: MMP_RS04760 - diaminopimelate epimerase, at 905,897 to 906,730
_RS04760
MMP_RS04765: MMP_RS04765 - asparagine synthase (glutamine-hydrolyzing), at 906,776 to 908,317
_RS04765
Position (kb) 905
906 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 904.633 kb on + strand, within MMP_RS04745 at 904.635 kb on - strand, within MMP_RS04745 at 904.635 kb on - strand, within MMP_RS04745 at 904.636 kb on + strand, within MMP_RS04745 at 904.653 kb on - strand, within MMP_RS04745 at 904.653 kb on - strand, within MMP_RS04745 at 904.653 kb on - strand, within MMP_RS04745 at 904.654 kb on + strand, within MMP_RS04745 at 904.671 kb on - strand, within MMP_RS04745 at 904.672 kb on + strand, within MMP_RS04745 at 904.674 kb on - strand, within MMP_RS04745 at 904.691 kb on + strand, within MMP_RS04745 at 904.734 kb on - strand, within MMP_RS04745 at 904.734 kb on - strand, within MMP_RS04745 at 904.735 kb on + strand, within MMP_RS04745 at 904.763 kb on + strand, within MMP_RS04745 at 904.772 kb on + strand, within MMP_RS04745 at 904.801 kb on - strand, within MMP_RS04745 at 904.802 kb on + strand, within MMP_RS04745 at 904.849 kb on + strand at 904.888 kb on - strand at 904.888 kb on - strand at 904.926 kb on - strand at 904.945 kb on + strand at 904.946 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.949 kb on + strand at 904.959 kb on + strand at 905.116 kb on - strand at 905.117 kb on + strand at 905.119 kb on + strand at 905.180 kb on + strand at 905.190 kb on - strand at 905.204 kb on + strand at 905.209 kb on - strand at 905.209 kb on - strand at 905.210 kb on + strand at 905.232 kb on - strand at 905.233 kb on + strand at 905.246 kb on + strand at 905.327 kb on - strand at 905.333 kb on + strand at 905.410 kb on + strand at 905.442 kb on - strand at 905.447 kb on + strand at 905.463 kb on + strand at 905.464 kb on - strand at 905.506 kb on - strand at 905.511 kb on + strand at 905.520 kb on + strand at 905.535 kb on + strand at 905.570 kb on - strand at 905.615 kb on + strand at 905.623 kb on + strand at 905.623 kb on + strand at 905.642 kb on + strand at 905.701 kb on + strand at 905.729 kb on + strand at 905.729 kb on + strand at 905.751 kb on + strand at 905.751 kb on + strand at 905.786 kb on + strand at 905.800 kb on - strand at 905.831 kb on - strand at 905.874 kb on + strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.884 kb on - strand at 905.884 kb on - strand at 905.885 kb on + strand at 905.923 kb on + strand at 905.933 kb on - strand at 905.935 kb on - strand at 905.939 kb on - strand at 905.939 kb on - strand at 905.940 kb on + strand at 905.944 kb on + strand at 906.199 kb on + strand at 906.348 kb on + strand at 906.387 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.393 kb on + strand at 906.405 kb on - strand at 906.430 kb on + strand at 906.680 kb on - strand at 906.680 kb on - strand at 906.681 kb on + strand at 906.742 kb on + strand at 906.758 kb on - strand at 906.798 kb on + strand at 906.820 kb on - strand at 906.821 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations remove 904,633 + MMP_RS04745 0.63 +0.2 904,635 - MMP_RS04745 0.63 -0.1 904,635 - MMP_RS04745 0.63 +0.0 904,636 + MMP_RS04745 0.63 +0.1 904,653 - MMP_RS04745 0.66 -0.3 904,653 - MMP_RS04745 0.66 -0.3 904,653 - MMP_RS04745 0.66 +0.1 904,654 + MMP_RS04745 0.66 +0.2 904,671 - MMP_RS04745 0.68 +0.3 904,672 + MMP_RS04745 0.68 +0.1 904,674 - MMP_RS04745 0.69 -0.3 904,691 + MMP_RS04745 0.71 +0.1 904,734 - MMP_RS04745 0.77 -0.7 904,734 - MMP_RS04745 0.77 +0.1 904,735 + MMP_RS04745 0.77 +0.6 904,763 + MMP_RS04745 0.81 +0.8 904,772 + MMP_RS04745 0.82 +0.2 904,801 - MMP_RS04745 0.87 +0.5 904,802 + MMP_RS04745 0.87 +0.1 904,849 + -0.2 904,888 - -0.4 904,888 - +0.0 904,926 - -0.1 904,945 + -0.1 904,946 - -6.8 904,948 - -5.1 904,948 - -5.6 904,948 - -5.8 904,948 - -5.7 904,949 + -2.6 904,959 + -1.6 905,116 - -4.9 905,117 + -3.6 905,119 + -4.4 905,180 + -5.2 905,190 - -4.5 905,204 + -6.0 905,209 - -5.2 905,209 - -5.3 905,210 + -5.1 905,232 - -4.6 905,233 + -3.7 905,246 + -5.8 905,327 - -4.5 905,333 + -4.4 905,410 + -5.5 905,442 - -4.3 905,447 + -5.1 905,463 + -4.4 905,464 - -4.7 905,506 - -5.4 905,511 + -5.3 905,520 + -5.2 905,535 + -5.5 905,570 - -4.4 905,615 + -4.9 905,623 + -4.3 905,623 + -3.6 905,642 + -5.0 905,701 + -5.0 905,729 + -6.5 905,729 + -4.2 905,751 + -5.8 905,751 + -4.5 905,786 + -1.7 905,800 - -5.4 905,831 - -4.1 905,874 + -0.8 905,882 - -5.2 905,882 - -5.3 905,882 - -5.0 905,882 - -5.3 905,882 - -5.4 905,882 - -5.5 905,882 - -5.2 905,882 - -4.1 905,883 + -5.3 905,883 + -5.0 905,883 + -3.9 905,883 + -3.4 905,883 + -6.9 905,883 + -4.4 905,884 - -5.4 905,884 - -5.8 905,885 + -4.1 905,923 + -5.4 905,933 - -5.2 905,935 - -4.6 905,939 - -3.7 905,939 - -5.1 905,940 + -5.4 905,944 + -4.4 906,199 + -4.6 906,348 + -4.8 906,387 - -5.4 906,392 - -5.0 906,392 - -4.1 906,392 - -4.5 906,392 - -4.0 906,392 - -5.9 906,393 + -5.2 906,405 - -4.9 906,430 + -2.8 906,680 - -6.0 906,680 - -4.9 906,681 + -5.0 906,742 + -0.2 906,758 - +0.6 906,798 + -0.3 906,820 - -2.7 906,821 + -3.5
Or see this region's nucleotide sequence