Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03850 and MMP_RS03855 are separated by 24 nucleotides MMP_RS03855 and MMP_RS03860 are separated by 81 nucleotides MMP_RS03860 and MMP_RS03865 are separated by 937 nucleotides
MMP_RS03850: MMP_RS03850 - PRC-barrel domain-containing protein, at 729,123 to 729,377
_RS03850
MMP_RS03855: MMP_RS03855 - aspartate dehydrogenase, at 729,402 to 730,205
_RS03855
MMP_RS03860: MMP_RS03860 - hypothetical protein, at 730,287 to 731,216
_RS03860
MMP_RS03865: MMP_RS03865 - aspartate/glutamate racemase family protein, at 732,154 to 732,858
_RS03865
Position (kb) 730
731
732 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 729.384 kb on + strand at 729.387 kb on - strand at 729.388 kb on + strand at 729.419 kb on + strand at 729.755 kb on + strand at 729.760 kb on - strand at 729.986 kb on + strand at 730.115 kb on - strand at 730.271 kb on + strand at 730.288 kb on - strand at 730.288 kb on - strand at 730.288 kb on - strand at 730.289 kb on + strand at 730.343 kb on - strand at 730.393 kb on + strand, within MMP_RS03860 at 730.429 kb on + strand, within MMP_RS03860 at 730.481 kb on - strand, within MMP_RS03860 at 730.645 kb on + strand, within MMP_RS03860 at 730.845 kb on - strand, within MMP_RS03860 at 730.845 kb on - strand, within MMP_RS03860 at 730.849 kb on - strand, within MMP_RS03860 at 730.849 kb on - strand, within MMP_RS03860 at 730.886 kb on - strand, within MMP_RS03860 at 730.895 kb on - strand, within MMP_RS03860 at 730.935 kb on - strand, within MMP_RS03860 at 730.935 kb on - strand, within MMP_RS03860 at 730.935 kb on - strand, within MMP_RS03860 at 730.936 kb on + strand, within MMP_RS03860 at 730.968 kb on - strand, within MMP_RS03860 at 730.973 kb on - strand, within MMP_RS03860 at 730.974 kb on + strand, within MMP_RS03860 at 730.974 kb on + strand, within MMP_RS03860 at 731.002 kb on + strand, within MMP_RS03860 at 731.036 kb on - strand, within MMP_RS03860 at 731.081 kb on - strand, within MMP_RS03860 at 731.082 kb on + strand, within MMP_RS03860 at 731.132 kb on - strand at 731.132 kb on - strand at 731.268 kb on - strand at 731.268 kb on - strand at 731.270 kb on - strand at 731.271 kb on + strand at 731.271 kb on + strand at 731.272 kb on - strand at 731.272 kb on - strand at 731.272 kb on - strand at 731.272 kb on - strand at 731.273 kb on + strand at 731.273 kb on + strand at 731.273 kb on + strand at 731.275 kb on - strand at 731.275 kb on - strand at 731.275 kb on - strand at 731.275 kb on - strand at 731.276 kb on + strand at 731.276 kb on + strand at 731.276 kb on + strand at 731.276 kb on + strand at 731.276 kb on + strand at 731.280 kb on + strand at 731.282 kb on - strand at 731.283 kb on + strand at 731.416 kb on - strand at 731.416 kb on - strand at 731.431 kb on - strand at 731.432 kb on + strand at 731.432 kb on + strand at 731.456 kb on + strand at 731.456 kb on + strand at 731.459 kb on + strand at 731.459 kb on + strand at 731.471 kb on - strand at 731.472 kb on + strand at 731.472 kb on + strand at 731.490 kb on + strand at 731.493 kb on - strand at 731.519 kb on - strand at 731.520 kb on + strand at 731.546 kb on - strand at 731.608 kb on - strand at 731.621 kb on - strand at 731.626 kb on + strand at 731.700 kb on + strand at 731.727 kb on - strand at 731.841 kb on - strand at 732.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations remove 729,384 + -4.4 729,387 - -3.4 729,388 + -4.0 729,419 + -3.4 729,755 + -5.1 729,760 - -4.5 729,986 + -4.5 730,115 - -3.5 730,271 + +0.4 730,288 - -0.5 730,288 - -0.0 730,288 - -0.6 730,289 + -0.2 730,343 - -0.2 730,393 + MMP_RS03860 0.11 -0.0 730,429 + MMP_RS03860 0.15 +0.1 730,481 - MMP_RS03860 0.21 -2.4 730,645 + MMP_RS03860 0.38 -0.9 730,845 - MMP_RS03860 0.60 -0.6 730,845 - MMP_RS03860 0.60 -0.9 730,849 - MMP_RS03860 0.60 -0.8 730,849 - MMP_RS03860 0.60 -0.8 730,886 - MMP_RS03860 0.64 -1.0 730,895 - MMP_RS03860 0.65 -0.2 730,935 - MMP_RS03860 0.70 -1.6 730,935 - MMP_RS03860 0.70 -0.1 730,935 - MMP_RS03860 0.70 -0.5 730,936 + MMP_RS03860 0.70 -0.0 730,968 - MMP_RS03860 0.73 -0.1 730,973 - MMP_RS03860 0.74 -0.6 730,974 + MMP_RS03860 0.74 -0.2 730,974 + MMP_RS03860 0.74 -1.1 731,002 + MMP_RS03860 0.77 -0.4 731,036 - MMP_RS03860 0.81 -0.9 731,081 - MMP_RS03860 0.85 -0.6 731,082 + MMP_RS03860 0.85 -0.4 731,132 - -0.1 731,132 - -0.7 731,268 - +0.1 731,268 - +0.2 731,270 - -0.3 731,271 + -0.5 731,271 + -0.6 731,272 - -0.0 731,272 - -0.3 731,272 - +0.1 731,272 - -0.4 731,273 + +0.2 731,273 + +0.2 731,273 + +0.5 731,275 - +0.2 731,275 - -0.3 731,275 - +0.4 731,275 - +0.5 731,276 + +0.2 731,276 + -0.8 731,276 + -0.7 731,276 + +0.2 731,276 + +0.2 731,280 + -0.0 731,282 - -0.0 731,283 + -0.4 731,416 - -0.1 731,416 - -0.1 731,431 - +0.3 731,432 + +0.3 731,432 + -0.7 731,456 + +0.1 731,456 + -0.3 731,459 + -0.8 731,459 + -1.2 731,471 - +0.2 731,472 + +0.2 731,472 + +0.3 731,490 + +0.4 731,493 - +0.1 731,519 - -0.1 731,520 + +0.5 731,546 - +0.2 731,608 - -0.2 731,621 - +0.0 731,626 + -0.3 731,700 + +0.1 731,727 - -0.7 731,841 - +0.1 732,063 - +0.0
Or see this region's nucleotide sequence