Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02650

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02645 and MMP_RS08945 are separated by 112 nucleotidesMMP_RS08945 and MMP_RS02650 are separated by 38 nucleotidesMMP_RS02650 and MMP_RS02655 are separated by 145 nucleotides MMP_RS02645: MMP_RS02645 - ArsR family transcriptional regulator, at 502,790 to 503,530 _RS02645 MMP_RS08945: MMP_RS08945 - hypothetical protein, at 503,643 to 503,786 _RS08945 MMP_RS02650: MMP_RS02650 - flavodoxin family protein, at 503,825 to 504,376 _RS02650 MMP_RS02655: MMP_RS02655 - terpene cyclase/mutase family protein, at 504,522 to 506,024 _RS02655 Position (kb) 503 504 505Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 502.829 kb on - strandat 502.850 kb on + strandat 502.995 kb on + strand, within MMP_RS02645at 503.067 kb on + strand, within MMP_RS02645at 503.215 kb on - strand, within MMP_RS02645at 503.219 kb on - strand, within MMP_RS02645at 503.252 kb on - strand, within MMP_RS02645at 503.282 kb on - strand, within MMP_RS02645at 503.295 kb on - strand, within MMP_RS02645at 503.332 kb on - strand, within MMP_RS02645at 503.372 kb on + strand, within MMP_RS02645at 503.408 kb on - strand, within MMP_RS02645at 503.409 kb on + strand, within MMP_RS02645at 503.411 kb on + strand, within MMP_RS02645at 503.535 kb on + strandat 503.546 kb on + strandat 503.553 kb on - strandat 503.556 kb on + strandat 503.562 kb on - strandat 503.563 kb on + strandat 503.612 kb on - strandat 503.613 kb on + strandat 503.633 kb on + strandat 503.640 kb on + strandat 503.642 kb on - strandat 503.643 kb on + strandat 503.673 kb on + strand, within MMP_RS08945at 503.673 kb on + strand, within MMP_RS08945at 503.714 kb on + strand, within MMP_RS08945at 503.720 kb on - strand, within MMP_RS08945at 503.720 kb on - strand, within MMP_RS08945at 503.721 kb on + strand, within MMP_RS08945at 503.721 kb on + strand, within MMP_RS08945at 503.732 kb on - strand, within MMP_RS08945at 503.732 kb on - strand, within MMP_RS08945at 503.732 kb on - strand, within MMP_RS08945at 503.733 kb on + strand, within MMP_RS08945at 503.733 kb on + strand, within MMP_RS08945at 503.733 kb on + strand, within MMP_RS08945at 503.734 kb on - strand, within MMP_RS08945at 503.734 kb on - strand, within MMP_RS08945at 503.735 kb on + strand, within MMP_RS08945at 503.735 kb on + strand, within MMP_RS08945at 503.735 kb on + strand, within MMP_RS08945at 503.759 kb on - strand, within MMP_RS08945at 503.778 kb on + strandat 503.785 kb on + strandat 503.785 kb on + strandat 503.812 kb on + strandat 503.812 kb on + strandat 503.833 kb on - strandat 503.928 kb on - strand, within MMP_RS02650at 503.929 kb on + strand, within MMP_RS02650at 503.954 kb on + strand, within MMP_RS02650at 503.954 kb on + strand, within MMP_RS02650at 503.983 kb on - strand, within MMP_RS02650at 504.017 kb on + strand, within MMP_RS02650at 504.125 kb on - strand, within MMP_RS02650at 504.132 kb on - strand, within MMP_RS02650at 504.186 kb on + strand, within MMP_RS02650at 504.224 kb on - strand, within MMP_RS02650at 504.225 kb on + strand, within MMP_RS02650at 504.264 kb on - strand, within MMP_RS02650at 504.424 kb on - strandat 504.425 kb on + strandat 504.427 kb on + strandat 504.457 kb on + strandat 504.506 kb on - strandat 504.528 kb on + strandat 504.568 kb on - strandat 504.568 kb on - strandat 504.569 kb on + strandat 504.569 kb on + strandat 504.569 kb on + strandat 504.572 kb on - strandat 504.725 kb on + strand, within MMP_RS02655at 504.746 kb on + strand, within MMP_RS02655at 504.795 kb on - strand, within MMP_RS02655at 504.801 kb on - strand, within MMP_RS02655at 504.818 kb on - strand, within MMP_RS02655at 504.836 kb on + strand, within MMP_RS02655at 504.837 kb on - strand, within MMP_RS02655at 504.837 kb on - strand, within MMP_RS02655at 504.838 kb on + strand, within MMP_RS02655at 504.838 kb on + strand, within MMP_RS02655at 504.838 kb on + strand, within MMP_RS02655at 504.870 kb on + strand, within MMP_RS02655at 504.891 kb on - strand, within MMP_RS02655at 504.892 kb on + strand, within MMP_RS02655at 504.954 kb on - strand, within MMP_RS02655at 504.955 kb on + strand, within MMP_RS02655at 504.960 kb on + strand, within MMP_RS02655at 505.018 kb on - strand, within MMP_RS02655at 505.018 kb on - strand, within MMP_RS02655at 505.019 kb on + strand, within MMP_RS02655at 505.019 kb on + strand, within MMP_RS02655at 505.019 kb on + strand, within MMP_RS02655at 505.020 kb on - strand, within MMP_RS02655at 505.020 kb on - strand, within MMP_RS02655at 505.021 kb on + strand, within MMP_RS02655at 505.064 kb on - strand, within MMP_RS02655at 505.064 kb on - strand, within MMP_RS02655at 505.068 kb on - strand, within MMP_RS02655at 505.094 kb on + strand, within MMP_RS02655at 505.101 kb on - strand, within MMP_RS02655at 505.130 kb on + strand, within MMP_RS02655at 505.154 kb on + strand, within MMP_RS02655at 505.206 kb on - strand, within MMP_RS02655at 505.231 kb on - strand, within MMP_RS02655at 505.263 kb on + strand, within MMP_RS02655at 505.311 kb on + strand, within MMP_RS02655at 505.341 kb on + strand, within MMP_RS02655

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
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502,829 - -3.9
502,850 + -3.3
502,995 + MMP_RS02645 0.28 -2.7
503,067 + MMP_RS02645 0.37 -2.6
503,215 - MMP_RS02645 0.57 -2.8
503,219 - MMP_RS02645 0.58 -2.6
503,252 - MMP_RS02645 0.62 -3.9
503,282 - MMP_RS02645 0.66 -2.8
503,295 - MMP_RS02645 0.68 -2.9
503,332 - MMP_RS02645 0.73 -5.1
503,372 + MMP_RS02645 0.79 -2.5
503,408 - MMP_RS02645 0.83 -3.3
503,409 + MMP_RS02645 0.84 -3.6
503,411 + MMP_RS02645 0.84 -3.1
503,535 + -1.5
503,546 + -4.0
503,553 - -3.4
503,556 + -2.3
503,562 - -3.6
503,563 + -3.3
503,612 - -6.6
503,613 + -5.3
503,633 + -5.8
503,640 + -4.5
503,642 - -4.6
503,643 + -4.0
503,673 + MMP_RS08945 0.21 -3.9
503,673 + MMP_RS08945 0.21 -5.0
503,714 + MMP_RS08945 0.49 -3.8
503,720 - MMP_RS08945 0.53 -4.6
503,720 - MMP_RS08945 0.53 -5.3
503,721 + MMP_RS08945 0.54 -3.8
503,721 + MMP_RS08945 0.54 -4.0
503,732 - MMP_RS08945 0.62 -5.2
503,732 - MMP_RS08945 0.62 -4.2
503,732 - MMP_RS08945 0.62 -2.9
503,733 + MMP_RS08945 0.62 -3.1
503,733 + MMP_RS08945 0.62 -4.1
503,733 + MMP_RS08945 0.62 -4.6
503,734 - MMP_RS08945 0.63 -5.1
503,734 - MMP_RS08945 0.63 -4.0
503,735 + MMP_RS08945 0.64 -6.1
503,735 + MMP_RS08945 0.64 -4.1
503,735 + MMP_RS08945 0.64 -2.9
503,759 - MMP_RS08945 0.81 -3.3
503,778 + -3.9
503,785 + -4.7
503,785 + -3.1
503,812 + -2.8
503,812 + -2.7
503,833 - -2.5
503,928 - MMP_RS02650 0.19 -2.0
503,929 + MMP_RS02650 0.19 -2.4
503,954 + MMP_RS02650 0.23 -3.7
503,954 + MMP_RS02650 0.23 -2.9
503,983 - MMP_RS02650 0.29 -2.6
504,017 + MMP_RS02650 0.35 -2.6
504,125 - MMP_RS02650 0.54 -1.9
504,132 - MMP_RS02650 0.56 -2.0
504,186 + MMP_RS02650 0.65 -1.6
504,224 - MMP_RS02650 0.72 -1.7
504,225 + MMP_RS02650 0.72 -2.2
504,264 - MMP_RS02650 0.80 -2.7
504,424 - -0.1
504,425 + -1.8
504,427 + -1.1
504,457 + +0.5
504,506 - -0.0
504,528 + -0.1
504,568 - -0.2
504,568 - -0.2
504,569 + +0.1
504,569 + +0.2
504,569 + -0.1
504,572 - +0.1
504,725 + MMP_RS02655 0.14 +0.3
504,746 + MMP_RS02655 0.15 +0.5
504,795 - MMP_RS02655 0.18 +0.3
504,801 - MMP_RS02655 0.19 +0.4
504,818 - MMP_RS02655 0.20 -0.5
504,836 + MMP_RS02655 0.21 -1.2
504,837 - MMP_RS02655 0.21 +0.3
504,837 - MMP_RS02655 0.21 +0.6
504,838 + MMP_RS02655 0.21 -0.3
504,838 + MMP_RS02655 0.21 +0.7
504,838 + MMP_RS02655 0.21 +0.6
504,870 + MMP_RS02655 0.23 +0.5
504,891 - MMP_RS02655 0.25 +0.0
504,892 + MMP_RS02655 0.25 +0.7
504,954 - MMP_RS02655 0.29 -0.1
504,955 + MMP_RS02655 0.29 +0.1
504,960 + MMP_RS02655 0.29 +0.4
505,018 - MMP_RS02655 0.33 +0.2
505,018 - MMP_RS02655 0.33 -0.9
505,019 + MMP_RS02655 0.33 -0.1
505,019 + MMP_RS02655 0.33 +0.4
505,019 + MMP_RS02655 0.33 +0.4
505,020 - MMP_RS02655 0.33 -0.0
505,020 - MMP_RS02655 0.33 +0.1
505,021 + MMP_RS02655 0.33 -0.3
505,064 - MMP_RS02655 0.36 +0.3
505,064 - MMP_RS02655 0.36 -0.1
505,068 - MMP_RS02655 0.36 -0.3
505,094 + MMP_RS02655 0.38 +0.2
505,101 - MMP_RS02655 0.39 +0.2
505,130 + MMP_RS02655 0.40 +0.1
505,154 + MMP_RS02655 0.42 +0.3
505,206 - MMP_RS02655 0.46 +0.4
505,231 - MMP_RS02655 0.47 +0.7
505,263 + MMP_RS02655 0.49 +0.4
505,311 + MMP_RS02655 0.52 +0.4
505,341 + MMP_RS02655 0.54 -0.9

Or see this region's nucleotide sequence