Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01265

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01255 and MMP_RS01260 are separated by 40 nucleotidesMMP_RS01260 and MMP_RS01265 are separated by 81 nucleotidesMMP_RS01265 and MMP_RS01270 are separated by 14 nucleotides MMP_RS01255: MMP_RS01255 - amino acid ABC transporter ATP-binding protein, at 238,007 to 238,738 _RS01255 MMP_RS01260: MMP_RS01260 - HDIG domain-containing protein, at 238,779 to 239,465 _RS01260 MMP_RS01265: MMP_RS01265 - hypothetical protein, at 239,547 to 239,915 _RS01265 MMP_RS01270: MMP_RS01270 - prepilin peptidase, at 239,930 to 240,970 _RS01270 Position (kb) 239 240Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 238.646 kb on - strand, within MMP_RS01255at 239.228 kb on + strand, within MMP_RS01260at 239.394 kb on - strand, within MMP_RS01260at 239.394 kb on - strand, within MMP_RS01260at 239.394 kb on - strand, within MMP_RS01260at 239.397 kb on + strandat 239.454 kb on - strandat 239.454 kb on - strandat 239.482 kb on - strandat 239.482 kb on - strandat 239.483 kb on + strandat 239.485 kb on + strandat 239.486 kb on - strandat 239.499 kb on + strandat 239.512 kb on + strandat 239.544 kb on - strandat 239.544 kb on - strandat 239.546 kb on - strandat 239.546 kb on - strandat 239.546 kb on - strandat 239.547 kb on + strandat 239.804 kb on - strand, within MMP_RS01265at 239.808 kb on + strand, within MMP_RS01265at 239.868 kb on + strand, within MMP_RS01265at 239.869 kb on - strand, within MMP_RS01265at 239.999 kb on - strandat 240.000 kb on + strandat 240.001 kb on - strandat 240.001 kb on - strandat 240.052 kb on + strand, within MMP_RS01270at 240.132 kb on - strand, within MMP_RS01270at 240.166 kb on - strand, within MMP_RS01270at 240.167 kb on + strand, within MMP_RS01270at 240.175 kb on - strand, within MMP_RS01270at 240.208 kb on - strand, within MMP_RS01270at 240.208 kb on - strand, within MMP_RS01270at 240.208 kb on - strand, within MMP_RS01270at 240.209 kb on + strand, within MMP_RS01270at 240.212 kb on - strand, within MMP_RS01270at 240.213 kb on + strand, within MMP_RS01270at 240.213 kb on + strand, within MMP_RS01270at 240.249 kb on - strand, within MMP_RS01270at 240.250 kb on + strand, within MMP_RS01270at 240.311 kb on + strand, within MMP_RS01270at 240.354 kb on - strand, within MMP_RS01270at 240.400 kb on + strand, within MMP_RS01270at 240.415 kb on + strand, within MMP_RS01270at 240.482 kb on + strand, within MMP_RS01270at 240.484 kb on - strand, within MMP_RS01270at 240.510 kb on + strand, within MMP_RS01270at 240.514 kb on + strand, within MMP_RS01270at 240.566 kb on - strand, within MMP_RS01270at 240.601 kb on + strand, within MMP_RS01270at 240.666 kb on - strand, within MMP_RS01270at 240.683 kb on + strand, within MMP_RS01270at 240.688 kb on + strand, within MMP_RS01270at 240.705 kb on - strand, within MMP_RS01270at 240.724 kb on - strand, within MMP_RS01270at 240.884 kb on + strandat 240.884 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
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238,646 - MMP_RS01255 0.87 +0.1
239,228 + MMP_RS01260 0.65 -0.2
239,394 - MMP_RS01260 0.90 +0.3
239,394 - MMP_RS01260 0.90 +0.2
239,394 - MMP_RS01260 0.90 -2.3
239,397 + -0.8
239,454 - -0.3
239,454 - -0.1
239,482 - +0.7
239,482 - +0.4
239,483 + -0.4
239,485 + -0.3
239,486 - -0.2
239,499 + +0.3
239,512 + +0.3
239,544 - -6.5
239,544 - -5.1
239,546 - -3.0
239,546 - -5.6
239,546 - -5.1
239,547 + -5.7
239,804 - MMP_RS01265 0.70 -6.0
239,808 + MMP_RS01265 0.71 -5.7
239,868 + MMP_RS01265 0.87 -6.9
239,869 - MMP_RS01265 0.87 -4.1
239,999 - +0.0
240,000 + +0.1
240,001 - +0.1
240,001 - +0.1
240,052 + MMP_RS01270 0.12 -0.1
240,132 - MMP_RS01270 0.19 +0.6
240,166 - MMP_RS01270 0.23 +0.4
240,167 + MMP_RS01270 0.23 -0.1
240,175 - MMP_RS01270 0.24 -0.2
240,208 - MMP_RS01270 0.27 +0.2
240,208 - MMP_RS01270 0.27 +0.5
240,208 - MMP_RS01270 0.27 +0.0
240,209 + MMP_RS01270 0.27 -0.2
240,212 - MMP_RS01270 0.27 +0.3
240,213 + MMP_RS01270 0.27 +0.1
240,213 + MMP_RS01270 0.27 -0.6
240,249 - MMP_RS01270 0.31 +0.5
240,250 + MMP_RS01270 0.31 +0.1
240,311 + MMP_RS01270 0.37 +0.0
240,354 - MMP_RS01270 0.41 +0.0
240,400 + MMP_RS01270 0.45 +0.2
240,415 + MMP_RS01270 0.47 +0.3
240,482 + MMP_RS01270 0.53 +0.4
240,484 - MMP_RS01270 0.53 -0.0
240,510 + MMP_RS01270 0.56 +0.3
240,514 + MMP_RS01270 0.56 -0.1
240,566 - MMP_RS01270 0.61 -1.6
240,601 + MMP_RS01270 0.64 +0.6
240,666 - MMP_RS01270 0.71 -0.9
240,683 + MMP_RS01270 0.72 -0.6
240,688 + MMP_RS01270 0.73 -0.7
240,705 - MMP_RS01270 0.74 -0.2
240,724 - MMP_RS01270 0.76 -0.0
240,884 + +0.1
240,884 + +0.1

Or see this region's nucleotide sequence