Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08050

Experiment: H2 pooled triplicate planktonic cells

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 pooled triplicate planktonic cells
1,472,605	+				-0.6
1,472,606	-				-0.2
1,472,700	+				-0.9
1,472,719	+				+2.8
1,472,758	-				+1.2
1,472,765	+				-0.0
1,472,802	-		MMJJ_RS08045	0.14	+2.1
1,472,805	-		MMJJ_RS08045	0.14	-0.8
1,472,850	+		MMJJ_RS08045	0.20	-0.2
1,472,865	-		MMJJ_RS08045	0.22	+0.9
1,472,892	+		MMJJ_RS08045	0.25	+1.3
1,472,892	+		MMJJ_RS08045	0.25	+1.7
1,472,939	-		MMJJ_RS08045	0.32	+2.6
1,472,939	-		MMJJ_RS08045	0.32	+0.7
1,472,940	+		MMJJ_RS08045	0.32	-0.8
1,472,940	+		MMJJ_RS08045	0.32	+0.6
1,472,963	-		MMJJ_RS08045	0.35	-1.0
1,472,964	+		MMJJ_RS08045	0.35	+0.0
1,472,966	-		MMJJ_RS08045	0.35	-0.8
1,472,967	+		MMJJ_RS08045	0.35	+1.9
1,472,967	+		MMJJ_RS08045	0.35	+5.6
1,472,967	+		MMJJ_RS08045	0.35	-0.4
1,472,967	+		MMJJ_RS08045	0.35	+0.4
1,472,968	-		MMJJ_RS08045	0.35	-0.3
1,472,968	-		MMJJ_RS08045	0.35	-0.4
1,472,968	-		MMJJ_RS08045	0.35	+1.4
1,472,969	+		MMJJ_RS08045	0.35	+0.5
1,472,969	+		MMJJ_RS08045	0.35	+0.5
1,472,970	-		MMJJ_RS08045	0.36	-0.6
1,472,970	-		MMJJ_RS08045	0.36	+0.5
1,472,971	+		MMJJ_RS08045	0.36	-0.4
1,472,971	+		MMJJ_RS08045	0.36	+0.2
1,472,971	+		MMJJ_RS08045	0.36	+0.0
1,472,976	-		MMJJ_RS08045	0.36	-2.0
1,472,977	+		MMJJ_RS08045	0.36	-0.1
1,472,977	+		MMJJ_RS08045	0.36	+0.2
1,472,983	-		MMJJ_RS08045	0.37	+0.8
1,472,983	-		MMJJ_RS08045	0.37	-0.6
1,472,984	+		MMJJ_RS08045	0.37	+1.1
1,472,988	-		MMJJ_RS08045	0.38	+1.8
1,472,989	+		MMJJ_RS08045	0.38	+1.4
1,472,989	+		MMJJ_RS08045	0.38	+1.9
1,472,993	+		MMJJ_RS08045	0.39	-0.4
1,472,993	+		MMJJ_RS08045	0.39	-0.4
1,473,064	+		MMJJ_RS08045	0.48	-1.3
1,473,073	-		MMJJ_RS08045	0.49	+0.2
1,473,081	-		MMJJ_RS08045	0.50	+3.3
1,473,082	+		MMJJ_RS08045	0.50	-1.2
1,473,117	+		MMJJ_RS08045	0.55	+0.1
1,473,117	+		MMJJ_RS08045	0.55	+1.6
1,473,120	+		MMJJ_RS08045	0.55	+0.8
1,473,120	+		MMJJ_RS08045	0.55	-0.3
1,473,156	+		MMJJ_RS08045	0.60	+0.4
1,473,161	+		MMJJ_RS08045	0.61	-0.6
1,473,177	-		MMJJ_RS08045	0.63	+3.2
1,473,230	-		MMJJ_RS08045	0.70	+1.3
1,473,230	-		MMJJ_RS08045	0.70	+1.4
1,473,251	+		MMJJ_RS08045	0.72	+1.3
1,473,320	-		MMJJ_RS08045	0.81	+0.2
1,473,321	+		MMJJ_RS08045	0.81	+0.2
1,473,322	-		MMJJ_RS08045	0.82	+1.2
1,473,323	+		MMJJ_RS08045	0.82	+0.9
1,473,323	+		MMJJ_RS08045	0.82	-0.9
1,473,323	+		MMJJ_RS08045	0.82	-0.9
1,473,346	-		MMJJ_RS08045	0.85	+2.7
1,473,358	-		MMJJ_RS08045	0.86	+0.7
1,473,359	+		MMJJ_RS08045	0.86	+0.6
1,473,359	+		MMJJ_RS08045	0.86	-1.1
1,473,363	-		MMJJ_RS08045	0.87	+1.1
1,473,394	+				+2.8
1,473,421	-				+4.5
1,473,421	-				-0.8
1,473,422	+				+0.6
1,473,448	+				-1.4
1,473,478	-				+5.3
1,473,478	-				+0.7
1,473,479	+				+1.4
1,473,485	-				-1.2
1,473,485	-				-0.1
1,473,486	+				-0.6
1,473,491	+				+1.1
1,473,491	+				-0.8
1,473,492	-				+2.2
1,473,499	-				+3.0
1,473,500	+				+0.8
1,473,500	+				+0.8
1,473,509	-				+0.3
1,473,524	+				-0.2
1,473,546	+				+0.2
1,473,562	+				-0.6
1,473,565	-				-0.9
1,473,565	-				-0.6
1,473,566	+				+1.6
1,473,569	-				-1.4
1,473,570	+				-0.8
1,473,570	+				+3.1
1,473,576	+				-0.1
1,473,576	+				+0.8
1,473,585	-				+2.4
1,473,585	-				+0.0
1,473,606	-				+1.1
1,473,754	+		MMJJ_RS08050	0.23	+1.0
1,473,794	+		MMJJ_RS08050	0.28	+0.4
1,473,804	-		MMJJ_RS08050	0.30	+0.3
1,473,804	-		MMJJ_RS08050	0.30	-0.2
1,473,804	-		MMJJ_RS08050	0.30	+0.9
1,473,806	-		MMJJ_RS08050	0.30	-0.6
1,473,806	-		MMJJ_RS08050	0.30	-0.3
1,473,806	-		MMJJ_RS08050	0.30	-0.2
1,473,806	-		MMJJ_RS08050	0.30	+0.0
1,473,806	-		MMJJ_RS08050	0.30	+1.5
1,473,806	-		MMJJ_RS08050	0.30	+1.2
1,473,806	-		MMJJ_RS08050	0.30	+0.6
1,473,806	-		MMJJ_RS08050	0.30	+2.5
1,473,807	+		MMJJ_RS08050	0.30	+4.2
1,473,807	+		MMJJ_RS08050	0.30	+0.5
1,473,807	+		MMJJ_RS08050	0.30	+1.4
1,473,807	+		MMJJ_RS08050	0.30	+1.5
1,473,807	+		MMJJ_RS08050	0.30	+1.7
1,473,837	-		MMJJ_RS08050	0.34	-1.2
1,473,838	+		MMJJ_RS08050	0.34	-0.3
1,473,838	+		MMJJ_RS08050	0.34	+0.4
1,473,859	-		MMJJ_RS08050	0.37	-0.3
1,473,859	-		MMJJ_RS08050	0.37	+1.5
1,473,859	-		MMJJ_RS08050	0.37	-0.8
1,473,860	+		MMJJ_RS08050	0.37	+0.5
1,473,870	-		MMJJ_RS08050	0.38	+1.8
1,473,870	-		MMJJ_RS08050	0.38	+2.2
1,473,871	+		MMJJ_RS08050	0.38	-0.5
1,473,892	-		MMJJ_RS08050	0.41	+1.4
1,473,892	-		MMJJ_RS08050	0.41	+0.3
1,473,892	-		MMJJ_RS08050	0.41	+2.2
1,473,893	+		MMJJ_RS08050	0.41	-0.1
1,473,893	+		MMJJ_RS08050	0.41	+1.0
1,473,893	+		MMJJ_RS08050	0.41	-0.2
1,473,894	-		MMJJ_RS08050	0.41	+3.3
1,473,894	-		MMJJ_RS08050	0.41	+1.5
1,473,894	-		MMJJ_RS08050	0.41	+0.6
1,473,894	-		MMJJ_RS08050	0.41	+1.5
1,473,895	+		MMJJ_RS08050	0.41	-1.1
1,473,895	+		MMJJ_RS08050	0.41	+1.1
1,473,895	+		MMJJ_RS08050	0.41	+0.0
1,473,938	+		MMJJ_RS08050	0.47	-0.8
1,473,981	-		MMJJ_RS08050	0.53	-1.9
1,473,981	-		MMJJ_RS08050	0.53	+3.5
1,473,981	-		MMJJ_RS08050	0.53	+0.7
1,473,981	-		MMJJ_RS08050	0.53	+0.1
1,473,981	-		MMJJ_RS08050	0.53	-2.4
1,473,981	-		MMJJ_RS08050	0.53	-0.7
1,473,982	+		MMJJ_RS08050	0.53	+1.3
1,473,982	+		MMJJ_RS08050	0.53	+1.3
1,473,982	+		MMJJ_RS08050	0.53	+2.7
1,473,982	+		MMJJ_RS08050	0.53	+2.6
1,473,982	+		MMJJ_RS08050	0.53	+1.7
1,473,982	+		MMJJ_RS08050	0.53	+2.0
1,473,982	+		MMJJ_RS08050	0.53	-0.4
1,473,993	-		MMJJ_RS08050	0.54	-2.9
1,473,993	-		MMJJ_RS08050	0.54	+0.8
1,473,993	-		MMJJ_RS08050	0.54	+0.3
1,473,993	-		MMJJ_RS08050	0.54	-0.1
1,473,994	+		MMJJ_RS08050	0.54	-0.6
1,473,994	+		MMJJ_RS08050	0.54	-0.0
1,473,994	+		MMJJ_RS08050	0.54	-1.4
1,473,994	+		MMJJ_RS08050	0.54	+0.7
1,473,994	+		MMJJ_RS08050	0.54	+1.7
1,473,994	+		MMJJ_RS08050	0.54	+0.6
1,474,129	-		MMJJ_RS08050	0.72	+2.2
1,474,192	+		MMJJ_RS08050	0.80	-0.8
1,474,230	+		MMJJ_RS08050	0.85	+2.6
1,474,244	-		MMJJ_RS08050	0.87	-0.2
1,474,245	+		MMJJ_RS08050	0.87	+1.6
1,474,249	-		MMJJ_RS08050	0.88	+1.0
1,474,249	-		MMJJ_RS08050	0.88	-2.1
1,474,249	-		MMJJ_RS08050	0.88	+1.3
1,474,250	+		MMJJ_RS08050	0.88	+1.2
1,474,250	+		MMJJ_RS08050	0.88	-1.9
1,474,252	-		MMJJ_RS08050	0.88	-0.2
1,474,253	+		MMJJ_RS08050	0.88	+0.8
1,474,253	+		MMJJ_RS08050	0.88	-0.7
1,474,254	-		MMJJ_RS08050	0.88	+0.5
1,474,276	-				+0.8
1,474,277	+				+0.4
1,474,277	+				-1.4
1,474,295	-				+1.9
1,474,296	+				+0.9
1,474,298	-				-0.5
1,474,314	+				-0.6
1,474,314	+				+1.7
1,474,316	-				-0.2
1,474,316	-				+0.4
1,474,316	-				+1.8
1,474,317	+				+0.5
1,474,317	+				+4.4
1,474,317	+				+0.5
1,474,317	+				-0.0
1,474,345	-				+0.7
1,474,346	+				+2.8
1,474,346	+				-1.2
1,474,346	+				+1.8
1,474,370	-				+2.5
1,474,371	+				+1.6
1,474,373	-				-0.3
1,474,373	-				+1.1
1,474,376	-				+1.4
1,474,377	+				+0.7
1,474,384	+				+0.3
1,474,388	-				-0.9
1,474,394	-				+0.8
1,474,394	-				+0.4
1,474,395	+				+0.2
1,474,395	+				-0.1
1,474,395	+				+2.1
1,474,396	-				-1.2
1,474,396	-				+0.6
1,474,397	+				-0.6
1,474,397	+				-1.2
1,474,397	+				+2.2
1,474,397	+				+2.2
1,474,397	+				+2.1
1,474,406	-				+1.4
1,474,424	+				-1.8
1,474,542	+				-1.4
1,474,543	-				-1.4
1,474,547	-				-2.4
1,474,548	+				-0.5
1,474,548	+				+3.6
1,474,548	+				+0.2
1,474,548	+				+0.7
1,474,548	+				-0.6
1,474,548	+				+0.6
1,474,548	+				-0.1
1,474,548	+				+0.8
1,474,549	-				+0.9
1,474,570	-				-2.9
1,474,570	-				-0.3
1,474,570	-				-1.3
1,474,570	-				-0.2
1,474,571	+				+0.7
1,474,571	+				-2.4
1,474,571	+				-0.0
1,474,591	-				-0.6
1,474,601	+				-1.2
1,474,617	+				-3.0
1,474,630	+				-3.2
1,474,630	+				-2.6
1,474,660	-				-1.8
1,474,681	-				-2.7
1,474,681	-				-2.9
1,474,682	+				-3.3
1,474,765	+				-3.1
1,474,767	+				-2.4
1,474,772	+				-2.4
1,474,811	-		MMJJ_RS08055	0.12	-1.8
1,474,845	-		MMJJ_RS08055	0.14	-2.0
1,474,846	+		MMJJ_RS08055	0.14	-2.0
1,474,846	+				-2.0
1,474,850	+		MMJJ_RS08055	0.15	-2.0
1,474,850	+		MMJJ_RS08055	0.15	-1.8
1,474,865	-		MMJJ_RS08055	0.16	-1.2
1,474,883	+		MMJJ_RS08055	0.17	+0.4
1,474,883	+		MMJJ_RS08055	0.17	-3.0
1,474,883	+		MMJJ_RS08055	0.17	-2.6
1,474,883	+		MMJJ_RS08055	0.17	-2.2
1,474,940	-				+0.8
1,475,312	-				-1.8
1,475,312	-		MMJJ_RS08055	0.46	-1.6
1,475,313	+		MMJJ_RS08055	0.46	-1.2