Experiment: L-Serine (N); ShewMM media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17645 and EX31_RS17650 are separated by 97 nucleotides EX31_RS17650 and EX31_RS17655 are separated by 324 nucleotides EX31_RS17655 and EX31_RS17660 are separated by 129 nucleotides
EX31_RS17645: EX31_RS17645 - SDR family oxidoreductase, at 79,504 to 80,559
_RS17645
EX31_RS17650: EX31_RS17650 - LysR family transcriptional regulator, at 80,657 to 81,553
_RS17650
EX31_RS17655: EX31_RS17655 - hypothetical protein, at 81,878 to 82,225
_RS17655
EX31_RS17660: EX31_RS17660 - alpha/beta hydrolase, at 82,355 to 83,383
_RS17660
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 79.724 kb on + strand, within EX31_RS17645 at 79.724 kb on + strand, within EX31_RS17645 at 79.725 kb on - strand, within EX31_RS17645 at 79.725 kb on - strand, within EX31_RS17645 at 79.725 kb on - strand, within EX31_RS17645 at 79.930 kb on - strand, within EX31_RS17645 at 79.930 kb on - strand, within EX31_RS17645 at 79.930 kb on - strand, within EX31_RS17645 at 79.930 kb on - strand, within EX31_RS17645 at 79.930 kb on - strand, within EX31_RS17645 at 79.966 kb on + strand, within EX31_RS17645 at 79.980 kb on + strand, within EX31_RS17645 at 79.995 kb on - strand, within EX31_RS17645 at 80.199 kb on - strand, within EX31_RS17645 at 80.207 kb on + strand, within EX31_RS17645 at 80.224 kb on + strand, within EX31_RS17645 at 80.224 kb on + strand, within EX31_RS17645 at 80.225 kb on - strand, within EX31_RS17645 at 80.407 kb on + strand, within EX31_RS17645 at 80.418 kb on + strand, within EX31_RS17645 at 80.418 kb on + strand, within EX31_RS17645 at 80.419 kb on - strand, within EX31_RS17645 at 80.419 kb on - strand, within EX31_RS17645 at 80.419 kb on - strand, within EX31_RS17645 at 80.435 kb on - strand, within EX31_RS17645 at 80.435 kb on - strand, within EX31_RS17645 at 80.435 kb on - strand, within EX31_RS17645 at 80.553 kb on + strand at 80.553 kb on + strand at 80.554 kb on - strand at 80.554 kb on - strand at 80.554 kb on - strand at 80.554 kb on - strand at 80.554 kb on - strand at 80.586 kb on + strand at 80.586 kb on + strand at 80.586 kb on + strand at 80.586 kb on + strand at 80.586 kb on + strand at 80.586 kb on + strand at 80.587 kb on - strand at 80.596 kb on + strand at 80.596 kb on + strand at 80.596 kb on + strand at 80.599 kb on - strand at 80.599 kb on - strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.639 kb on + strand at 80.640 kb on - strand at 80.665 kb on + strand at 80.665 kb on + strand at 80.665 kb on + strand at 80.666 kb on - strand at 80.799 kb on + strand, within EX31_RS17650 at 80.800 kb on - strand, within EX31_RS17650 at 80.812 kb on + strand, within EX31_RS17650 at 80.812 kb on + strand, within EX31_RS17650 at 80.813 kb on - strand, within EX31_RS17650 at 80.813 kb on - strand, within EX31_RS17650 at 80.813 kb on - strand, within EX31_RS17650 at 80.980 kb on - strand, within EX31_RS17650 at 81.025 kb on + strand, within EX31_RS17650 at 81.136 kb on + strand, within EX31_RS17650 at 81.169 kb on + strand, within EX31_RS17650 at 81.246 kb on + strand, within EX31_RS17650 at 81.271 kb on + strand, within EX31_RS17650 at 81.286 kb on + strand, within EX31_RS17650 at 81.286 kb on + strand, within EX31_RS17650 at 81.286 kb on + strand, within EX31_RS17650 at 81.287 kb on - strand, within EX31_RS17650 at 81.287 kb on - strand, within EX31_RS17650 at 81.289 kb on + strand, within EX31_RS17650 at 81.290 kb on - strand, within EX31_RS17650 at 81.307 kb on + strand, within EX31_RS17650 at 81.324 kb on + strand, within EX31_RS17650 at 81.324 kb on + strand, within EX31_RS17650 at 81.324 kb on + strand, within EX31_RS17650 at 81.367 kb on - strand, within EX31_RS17650 at 81.367 kb on - strand, within EX31_RS17650 at 81.456 kb on - strand, within EX31_RS17650 at 81.473 kb on - strand at 81.504 kb on + strand at 81.505 kb on - strand at 81.549 kb on + strand at 81.549 kb on + strand at 81.549 kb on + strand at 81.550 kb on - strand at 81.550 kb on - strand at 81.550 kb on - strand at 81.550 kb on - strand at 81.550 kb on - strand at 81.550 kb on - strand at 81.571 kb on + strand at 81.876 kb on + strand at 81.876 kb on + strand at 81.879 kb on + strand at 81.880 kb on - strand at 81.902 kb on + strand at 81.907 kb on + strand at 81.908 kb on - strand at 81.945 kb on - strand, within EX31_RS17655 at 81.945 kb on - strand, within EX31_RS17655 at 81.966 kb on + strand, within EX31_RS17655 at 81.994 kb on - strand, within EX31_RS17655 at 81.994 kb on - strand, within EX31_RS17655 at 81.998 kb on + strand, within EX31_RS17655 at 81.999 kb on - strand, within EX31_RS17655 at 81.999 kb on - strand, within EX31_RS17655 at 82.020 kb on + strand, within EX31_RS17655 at 82.021 kb on - strand, within EX31_RS17655 at 82.078 kb on + strand, within EX31_RS17655 at 82.079 kb on - strand, within EX31_RS17655 at 82.079 kb on - strand, within EX31_RS17655 at 82.113 kb on - strand, within EX31_RS17655 at 82.113 kb on - strand, within EX31_RS17655 at 82.144 kb on + strand, within EX31_RS17655 at 82.145 kb on - strand, within EX31_RS17655 at 82.145 kb on - strand, within EX31_RS17655 at 82.145 kb on - strand, within EX31_RS17655 at 82.147 kb on + strand, within EX31_RS17655 at 82.147 kb on + strand, within EX31_RS17655 at 82.281 kb on - strand at 82.372 kb on + strand at 82.419 kb on + strand at 82.452 kb on + strand at 82.452 kb on + strand at 82.452 kb on + strand at 82.452 kb on + strand at 82.452 kb on + strand at 82.452 kb on + strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.482 kb on + strand, within EX31_RS17660 at 82.482 kb on + strand, within EX31_RS17660
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking remove 79,724 + EX31_RS17645 0.21 +0.1 79,724 + EX31_RS17645 0.21 -0.0 79,725 - EX31_RS17645 0.21 +0.3 79,725 - EX31_RS17645 0.21 -1.1 79,725 - EX31_RS17645 0.21 +0.3 79,930 - EX31_RS17645 0.40 -0.2 79,930 - EX31_RS17645 0.40 +0.3 79,930 - EX31_RS17645 0.40 -1.5 79,930 - EX31_RS17645 0.40 -0.1 79,930 - EX31_RS17645 0.40 +1.0 79,966 + EX31_RS17645 0.44 -0.0 79,980 + EX31_RS17645 0.45 +0.9 79,995 - EX31_RS17645 0.46 +0.5 80,199 - EX31_RS17645 0.66 -0.3 80,207 + EX31_RS17645 0.67 -0.1 80,224 + EX31_RS17645 0.68 +1.1 80,224 + EX31_RS17645 0.68 +1.9 80,225 - EX31_RS17645 0.68 +0.5 80,407 + EX31_RS17645 0.86 +0.3 80,418 + EX31_RS17645 0.87 +0.3 80,418 + EX31_RS17645 0.87 +1.9 80,419 - EX31_RS17645 0.87 +1.9 80,419 - EX31_RS17645 0.87 +0.5 80,419 - EX31_RS17645 0.87 -0.2 80,435 - EX31_RS17645 0.88 -0.1 80,435 - EX31_RS17645 0.88 +1.0 80,435 - EX31_RS17645 0.88 +1.2 80,553 + +0.9 80,553 + -0.4 80,554 - -0.3 80,554 - -0.1 80,554 - +0.9 80,554 - -0.5 80,554 - -0.5 80,586 + -0.3 80,586 + -1.1 80,586 + +0.2 80,586 + +0.3 80,586 + -0.9 80,586 + +1.5 80,587 - +1.3 80,596 + +0.1 80,596 + +2.9 80,596 + -0.5 80,599 - -0.7 80,599 - +0.3 80,616 + +0.4 80,616 + +1.8 80,617 - +0.1 80,617 - -1.6 80,639 + +2.5 80,640 - -1.0 80,665 + +0.6 80,665 + +0.6 80,665 + +0.5 80,666 - -1.8 80,799 + EX31_RS17650 0.16 -0.1 80,800 - EX31_RS17650 0.16 +1.4 80,812 + EX31_RS17650 0.17 -1.1 80,812 + EX31_RS17650 0.17 +0.9 80,813 - EX31_RS17650 0.17 -2.0 80,813 - EX31_RS17650 0.17 +1.1 80,813 - EX31_RS17650 0.17 -0.3 80,980 - EX31_RS17650 0.36 +1.3 81,025 + EX31_RS17650 0.41 -0.1 81,136 + EX31_RS17650 0.53 -0.0 81,169 + EX31_RS17650 0.57 +0.5 81,246 + EX31_RS17650 0.66 -1.1 81,271 + EX31_RS17650 0.68 +0.2 81,286 + EX31_RS17650 0.70 +1.9 81,286 + EX31_RS17650 0.70 -0.2 81,286 + EX31_RS17650 0.70 -0.4 81,287 - EX31_RS17650 0.70 -0.7 81,287 - EX31_RS17650 0.70 -0.5 81,289 + EX31_RS17650 0.70 +0.6 81,290 - EX31_RS17650 0.71 +1.3 81,307 + EX31_RS17650 0.72 +1.3 81,324 + EX31_RS17650 0.74 -0.9 81,324 + EX31_RS17650 0.74 +0.1 81,324 + EX31_RS17650 0.74 -0.9 81,367 - EX31_RS17650 0.79 +0.8 81,367 - EX31_RS17650 0.79 +0.1 81,456 - EX31_RS17650 0.89 +1.0 81,473 - -0.8 81,504 + +0.9 81,505 - -1.1 81,549 + +0.5 81,549 + -0.6 81,549 + +0.1 81,550 - +1.9 81,550 - -0.5 81,550 - +0.3 81,550 - +0.9 81,550 - +0.6 81,550 - +0.5 81,571 + +0.4 81,876 + -0.1 81,876 + +1.2 81,879 + +0.2 81,880 - -1.2 81,902 + +3.9 81,907 + -0.2 81,908 - +3.2 81,945 - EX31_RS17655 0.19 +1.3 81,945 - EX31_RS17655 0.19 +0.3 81,966 + EX31_RS17655 0.25 +1.5 81,994 - EX31_RS17655 0.33 -0.5 81,994 - EX31_RS17655 0.33 +1.2 81,998 + EX31_RS17655 0.34 -0.5 81,999 - EX31_RS17655 0.35 +0.5 81,999 - EX31_RS17655 0.35 -0.1 82,020 + EX31_RS17655 0.41 +0.9 82,021 - EX31_RS17655 0.41 +1.3 82,078 + EX31_RS17655 0.57 +1.9 82,079 - EX31_RS17655 0.58 +0.7 82,079 - EX31_RS17655 0.58 +0.2 82,113 - EX31_RS17655 0.68 +1.3 82,113 - EX31_RS17655 0.68 +0.3 82,144 + EX31_RS17655 0.76 +0.2 82,145 - EX31_RS17655 0.77 -0.9 82,145 - EX31_RS17655 0.77 -0.6 82,145 - EX31_RS17655 0.77 +2.3 82,147 + EX31_RS17655 0.77 +2.7 82,147 + EX31_RS17655 0.77 +1.5 82,281 - +0.1 82,372 + +3.5 82,419 + -0.1 82,452 + +0.6 82,452 + +1.3 82,452 + -0.3 82,452 + +0.1 82,452 + -0.3 82,452 + +1.5 82,453 - -0.2 82,453 - +0.6 82,453 - +0.1 82,453 - -0.1 82,453 - -1.6 82,453 - -0.2 82,453 - -0.9 82,453 - -0.9 82,453 - -0.2 82,453 - +0.3 82,453 - +0.3 82,482 + EX31_RS17660 0.12 +0.5 82,482 + EX31_RS17660 0.12 +0.3
Or see this region's nucleotide sequence